Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020548.1

Orthogroup ID

OG0002353

Physical Location & Seq

Genomic Coordinates Reverse (-)

23805 .. 24730

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020548.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgagggacaagtctctgcggcggagaatgagatccaagtctccgatgagaaacatgccctttggtaataatgactgttgctttgcgaaagatctgaaggagggtgatttggggaaaaagaagaagataccggagaatggtgaggaggaggaggaggaagaagttgggagcttggagactactccttcgaagaagccggagaatggtgaggaggaggaggaggaagaagttgggagcttggagactactccgtcggtttcagcttcgtcttcaagatcatcctcagctggaagaaactcgaaaagatggaggcaggaattgtgtcggagtgcagttgagtatgagggggtcgcgaataagttggagaaagcgagtttagggtttcgacgattgaagaaattttggagtcgggagttgaggggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1645

Protein Analysis

141

Amino Acids

16.08

Weight (kDa)

8.42

Isoelectric Point (pI)

82.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62630
fragaria_vesca	FvH4_6g07220 FvH4_6g07220 FvH4_6g07220
malus_domestica	MD04G1195400.v1.1 MD12G1207500.v1.1
prunus_persica	Prupe.6G315100_v2.0.a1
pyrus_communis	pycom04g17260 pycom12g19510 pycom15g32780
rosa_chinensis	RchiOBHm_Chr1g0333511 RchiOBHm_Chr1g0352421 RchiOBHm_Chr2g0129671 RchiOBHm_Chr3g0456851 RchiOBHm_Chr5g0038721 RchiOBHm_Chr6g0249361
rosa_laevigata	RLG00000023272 RLG00000025274
rosa_multiflora	Rmu_co8019462.1_g000001 Rmu_sc0000133.1_g000019 Rmu_sc0000741.1_g000014 Rmu_sc0001016.1_g000061 Rmu_sc0001890.1_g000010 Rmu_sc0002095.1_g000008 Rmu_sc0002955.1_g000021 Rmu_sc0005500.1_g000015 Rmu_sc0010617.1_g000006 Rmu_sc0020548.1_g000004 Rmu_sc0020548.1_g000005 Rmu_sc0033338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223580 Rroxscaffold_6G00422440
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh1AG132800 Rh1AG157400 Rh1CG147200 Rh3AG076700 Rh3BG078500 Rh3CG078300 Rh3DG080300 Rh4DG243900
rosa_wichuraiana	Rw3G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	250
AccII	CGCG	1 cut(s)	353
AciI	CCGC	2 cut(s)	19, 22
AclWI	GGATC	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	137, 203
AgsI	TTSAA	2 cut(s)	273, 394
AluBI	AGCT	4 cut(s)	171, 237, 263, 287
AluI	AGCT	4 cut(s)	171, 237, 263, 287
Alw26I	GTCTC	4 cut(s)	18, 45, 170, 236
AlwI	GGATC	1 cut(s)	27
ApoI	RAATTY	1 cut(s)	398
ArsI	GACNNNNNNTTYG	4 cut(s)	65, 97, 169, 201
AsuHPI	GGTGA	3 cut(s)	116, 152, 218
AsuII	TTCGAA	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	261
BbvCI	CCTCAGC	1 cut(s)	283
BccI	CCATC	1 cut(s)	300
BcoDI	GTCTC	4 cut(s)	18, 45, 170, 236
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 203
BseGI	GGATG	1 cut(s)	278
BseLI	CCNNNNNNNGG	2 cut(s)	137, 203
BseMII	CTCAG	1 cut(s)	297
BseRI	GAGGAG	8 cut(s)	158, 161, 164, 167, 224, 227, 230, 233
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	131, 197
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	137, 203
BsmAI	GTCTC	4 cut(s)	18, 45, 170, 236
BsmFI	GGGAC	1 cut(s)	20
Bsp119I	TTCGAA	1 cut(s)	188
Bsp143I	GATC	3 cut(s)	32, 91, 275
Bsp68I	TCGCGA	1 cut(s)	353
BspACI	CCGC	2 cut(s)	19, 22
BspCNI	CTCAG	1 cut(s)	296
BspFNI	CGCG	1 cut(s)	353
BspPI	GGATC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	188
BssMI	GATC	3 cut(s)	32, 91, 275
Bst4CI	ACNGT	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	278
BstFNI	CGCG	1 cut(s)	353
BstKTI	GATC	3 cut(s)	35, 94, 278
BstMAI	GTCTC	4 cut(s)	18, 45, 170, 236
BstMBI	GATC	3 cut(s)	32, 91, 275
BstNSI	RCATGY	1 cut(s)	58
BstUI	CGCG	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	2 cut(s)	32, 91
BstYI	RGATCY	2 cut(s)	32, 91
BtsCI	GGATG	1 cut(s)	278
BtuMI	TCGCGA	1 cut(s)	353
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	5 cut(s)	171, 196, 237, 263, 287
CviKI_1	RGCY	5 cut(s)	171, 196, 237, 263, 287
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	3 cut(s)	34, 93, 277
DpnII	GATC	3 cut(s)	32, 91, 275
DrdI	GACNNNNNNGTC	1 cut(s)	250
DseDI	GACNNNNNNGTC	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	116
FaeI	CATG	1 cut(s)	58
FaiI	YATR	2 cut(s)	56, 342
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	20
HapII	CCGG	2 cut(s)	131, 197
Hin1II	CATG	1 cut(s)	58
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	2 cut(s)	131, 197
HphI	GGTGA	3 cut(s)	116, 152, 218
Hpy188I	TCNGA	3 cut(s)	45, 96, 327
Hpy188III	TCNNGA	3 cut(s)	273, 352, 410
Hpy99I	CGWCG	2 cut(s)	256, 390
HpyAV	CCTTC	2 cut(s)	91, 195
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	283
Hsp92II	CATG	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	32, 91, 275
LmnI	GCTCC	2 cut(s)	168, 234
LpnPI	CCDG	4 cut(s)	144, 210, 273, 299
MalI	GATC	3 cut(s)	34, 93, 277
MboI	GATC	3 cut(s)	32, 91, 275
MboII	GAAGA	8 cut(s)	133, 136, 170, 202, 236, 261, 303, 406
MflI	RGATCY	2 cut(s)	32, 91
MluCI	AATT	2 cut(s)	317, 398
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	2 cut(s)	305, 342
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	2 cut(s)	131, 197
MvnI	CGCG	1 cut(s)	353
NdeII	GATC	3 cut(s)	32, 91, 275
NlaIII	CATG	1 cut(s)	58
NruI	TCGCGA	1 cut(s)	353
NspI	RCATGY	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PsuI	RGATCY	2 cut(s)	32, 91
PvuII	CAGCTG	1 cut(s)	287
RruI	TCGCGA	1 cut(s)	353
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	3 cut(s)	32, 91, 275
SchI	GAGTC	1 cut(s)	415
SetI	ASST	4 cut(s)	173, 239, 265, 289
SfuI	TTCGAA	1 cut(s)	188
Sse9I	AATT	2 cut(s)	317, 398
SsiI	CCGC	2 cut(s)	19, 22
TaaI	ACNGT	1 cut(s)	77
TaqI	TCGA	3 cut(s)	188, 299, 385
TasI	AATT	2 cut(s)	317, 398
TauI	GCSGC	1 cut(s)	22
TspGWI	ACGGA	1 cut(s)	240
XapI	RAATTY	1 cut(s)	398
XceI	RCATGY	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.