Rh1AG157400

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002353
Physical Location & Seq
Reverse (-)
29609437 .. 29613696
4260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG157400.1

Sequence Viewer

Length: 432 bp
ATGAGGGACAACTCTTTGCGGCGGAGAACGAGATCCATGTCTCCGATGAGAAACATGCCCTTTGGTAATAATGATTGTTGCTTTGCGAAAGATCTGAAGGAGGGTGATTTAGGGAAAAAGAAGAAGAAACTGGAGAATGGTGAGGAGGAGGAGGAGAAGGAAGAAGTTAGGAGCTTGGAGACTACTCCTTCGGTTTCAGCTTCGTCTTCAAGATCATCCTCAGCTAGAAGAAACTCGAAAAGATGGGTCTTTCTGAAAGATTTTCTCCACAGGAGTAAAAGTGAAGGGAGGAGTACTAATAACAAATTCTGGGCCACAATCTCATTCTTAAGTAGTGGTAAGGAGAAGAAAATAGAGGTAAGTGTTGGGGGAGAAAATAGGCAGAAAATTGGCTCGTTCGAGACAAGTGTTGATCAATGGGGTAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

143

Amino Acids

16.42

Weight (kDa)

9.96

Isoelectric Point (pI)

72.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 2 - 117 1.9e-16 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 19, 22
AclWI GGATC 1 cut(s) 27
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 1 cut(s) 295
AflII CTTAAG 1 cut(s) 328
AgsI TTSAA 1 cut(s) 210
AluBI AGCT 3 cut(s) 174, 200, 224
AluI AGCT 3 cut(s) 174, 200, 224
Alw26I GTCTC 3 cut(s) 45, 173, 395
AlwI GGATC 1 cut(s) 27
AoxI GGCC 1 cut(s) 312
ApoI RAATTY 1 cut(s) 305
ArsI GACNNNNNNTTYG 2 cut(s) 172, 204
AspS9I GGNCC 1 cut(s) 312
AsuHPI GGTGA 2 cut(s) 116, 152
BbsI GAAGAC 1 cut(s) 198
BbvCI CCTCAGC 1 cut(s) 220
BccI CCATC 1 cut(s) 237
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 3 cut(s) 45, 173, 395
BfaI CTAG 1 cut(s) 225
BfrI CTTAAG 1 cut(s) 328
BglII AGATCT 1 cut(s) 91
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
BmcAI AGTACT 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bse1I ACTGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 5 cut(s) 158, 161, 164, 167, 304
BshFI GGCC 1 cut(s) 314
BslFI GGGAC 1 cut(s) 20
BsmAI GTCTC 3 cut(s) 45, 173, 395
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 1 cut(s) 314
Bsp143I GATC 4 cut(s) 32, 91, 212, 412
BspACI CCGC 2 cut(s) 19, 22
BspANI GGCC 1 cut(s) 314
BspCNI CTCAG 1 cut(s) 233
BspPI GGATC 1 cut(s) 27
BspTI CTTAAG 1 cut(s) 328
BsrI ACTGG 1 cut(s) 135
BssMI GATC 4 cut(s) 32, 91, 212, 412
BstAFI CTTAAG 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 215
BstKTI GATC 4 cut(s) 35, 94, 215, 415
BstMAI GTCTC 3 cut(s) 45, 173, 395
BstMBI GATC 4 cut(s) 32, 91, 212, 412
BstNSI RCATGY 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 2 cut(s) 32, 91
BstYI RGATCY 2 cut(s) 32, 91
BsuRI GGCC 1 cut(s) 314
BtsCI GGATG 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 312
Csp6I GTAC 1 cut(s) 294
CviAII CATG 2 cut(s) 37, 55
CviJI RGCY 5 cut(s) 174, 200, 224, 314, 393
CviKI_1 RGCY 5 cut(s) 174, 200, 224, 314, 393
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 1 cut(s) 220
DpnI GATC 4 cut(s) 34, 93, 214, 414
DpnII GATC 4 cut(s) 32, 91, 212, 412
EciI GGCGGA 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 116
FaeI CATG 2 cut(s) 40, 58
FaiI YATR 2 cut(s) 38, 56
FaqI GGGAC 1 cut(s) 20
FatI CATG 2 cut(s) 36, 54
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 20
FspBI CTAG 1 cut(s) 225
GluI GCNGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 1 cut(s) 314
Hin1II CATG 2 cut(s) 40, 58
HphI GGTGA 2 cut(s) 116, 152
Hpy188I TCNGA 3 cut(s) 45, 96, 255
Hpy188III TCNNGA 2 cut(s) 210, 400
HpyAV CCTTC 4 cut(s) 91, 151, 198, 278
HpyF3I CTNAG 1 cut(s) 220
Hsp92II CATG 2 cut(s) 40, 58
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 4 cut(s) 32, 91, 212, 412
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 3 cut(s) 116, 256, 295
MaeI CTAG 1 cut(s) 225
MalI GATC 4 cut(s) 34, 93, 214, 414
MboI GATC 4 cut(s) 32, 91, 212, 412
MboII GAAGA 6 cut(s) 133, 136, 173, 198, 240, 358
MflI RGATCY 2 cut(s) 32, 91
MluCI AATT 2 cut(s) 305, 387
MnlI CCTC 8 cut(s) 94, 136, 139, 142, 145, 229, 282, 349
MseI TTAA 1 cut(s) 329
MspCI CTTAAG 1 cut(s) 328
NdeII GATC 4 cut(s) 32, 91, 212, 412
NlaIII CATG 2 cut(s) 40, 58
NspI RCATGY 1 cut(s) 58
PkrI GCNGC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 312
PsuI RGATCY 2 cut(s) 32, 91
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 4 cut(s) 32, 91, 212, 412
Sau96I GGNCC 1 cut(s) 312
ScaI AGTACT 1 cut(s) 295
SetI ASST 4 cut(s) 176, 202, 226, 360
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 2 cut(s) 305, 387
SsiI CCGC 2 cut(s) 19, 22
SspMI CTAG 1 cut(s) 225
TaqI TCGA 2 cut(s) 236, 399
TasI AATT 2 cut(s) 305, 387
TatI WGTACW 1 cut(s) 293
TauI GCSGC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
Vha464I CTTAAG 1 cut(s) 328
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 58
XspI CTAG 1 cut(s) 225
ZrmI AGTACT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.