Rh3DG080300

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002353
Physical Location & Seq
Forward (+)
6219073 .. 6220956
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG080300.1

Sequence Viewer

Length: 1047 bp
ATGGAGCTCAAACCAACCTCCAACAATGGCCATAGCTCAACCCCTGAACCAAACCTCGACCTTCCAAACCCTAGCAATGGCGAAACCCACAAAACCCACGACCCCCATTTCTTCTACGAAGACATTGACAGCAACTGCTCCACCCCTTACGTCAGCGCTCCCTCCAGCCCCGGCCGCGGACCCATCAGCGGTTTCTTCTACAGTGCACCGGCGAGCCCAATGCACTTTGTCCTCTCTTCAAATTCACTCAACTCACCCAACTCTTCTTCGTTTGACACGGCGGCGTCGGAGTTCGAGTTCTCAGCTCGGTTCGGGTCGAATGGATCTACTGCGACCGGGCCAATGAGCTCGGCAGATGAGCTGTTCTTGAATGGAAAGATCCGGCCCATGAAGCTCTCCACCCACCTGGAAAAGCCCCAGGCGCCGTTGCAGGCTGTCAACGAGGAAGATGGAGATGATCTATTCGAGTTCGGGCCGCTGAGAGGCAGAGATCTGAGGATGAGGGACAAGTCTCTGCGGCGGAGAACGAGATCCATGTCTCCGATGAGAAACCTGCCCTTTGATTGCGAGATTTACGGCGAAAATGAAATCAGTAATAATGACTGTTGCTTTGCGGAAGATCTGAAGGAGGGGAGGAGTAACAACAAATTCTGGGCCACAATCTCATTCTCGAGTAGTGGTAAGGAGAAGAAACCCATGAAGGGAGGGAGTCAAAAGGAGTCTTTGAATTTGGGGACGGAGCCGGCGACCCAGAAAGCCAAGGGGGCAAGTGGGTCTGCTCCGGGGAAGAAGCCGGTGGCTGGGAAACCAGCCAACGGAGTCGGGAAGCGGCGGATGGCTCCGTCGCTTCACGAGCTGCATTACACTGCTAATAGAGCTCAGGCGGAGGAAATGAGGAAGAAGACTTACTTGCCCTACAGGCAAGGATTGCTTGGATGCTTGGGTTTTAGCTCAAAGGGGTATGGAGCTGCCATGAGTACTGGGTTTGCTAGAGCACTAAACCCAGTCTCTTCCAGAGGACACACCTCAAACACAAACAGCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

348

Amino Acids

37.72

Weight (kDa)

8.84

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 118 - 305 7.7e-26 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 561
AccB1I GGYRCC 1 cut(s) 421
AccII CGCG 1 cut(s) 177
AclWI GGATC 3 cut(s) 331, 373, 525
AcoI YGGCCR 2 cut(s) 28, 172
AcsI RAATTY 3 cut(s) 241, 647, 727
AcuI CTGAAG 1 cut(s) 644
AcyI GRCGYC 2 cut(s) 284, 422
AfaI GTAC 1 cut(s) 979
AfeI AGCGCT 1 cut(s) 157
AfiI CCNNNNNNNGG 7 cut(s) 77, 176, 188, 482, 701, 800, 815
AgsI TTSAA 3 cut(s) 240, 370, 727
AjnI CCWGG 2 cut(s) 405, 417
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
Alw21I GWGCWC 5 cut(s) 9, 208, 350, 880, 997
Alw26I GTCTC 3 cut(s) 516, 543, 1012
Alw44I GTGCAC 1 cut(s) 204
AlwI GGATC 3 cut(s) 331, 373, 525
AlwNI CAGNNNCTG 2 cut(s) 135, 1044
Ama87I CYCGRG 1 cut(s) 670
Aor51HI AGCGCT 1 cut(s) 157
AoxI GGCC 6 cut(s) 28, 172, 338, 383, 473, 654
ApaLI GTGCAC 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 856, 968
ApoI RAATTY 3 cut(s) 241, 647, 727
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
AspLEI GCGC 2 cut(s) 158, 424
AspS9I GGNCC 5 cut(s) 179, 338, 384, 473, 654
AsuC2I CCSGG 3 cut(s) 171, 337, 783
AsuHPI GGTGA 1 cut(s) 246
AvaI CYCGRG 1 cut(s) 670
AvaII GGWCC 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 208
BalI TGGCCA 1 cut(s) 30
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 4 cut(s) 9, 218, 350, 880
BarI GAAGNNNNNNTAC 2 cut(s) 890, 922
BauI CACGAG 1 cut(s) 851
BbsI GAAGAC 2 cut(s) 126, 908
Bbv12I GWGCWC 5 cut(s) 9, 208, 350, 880, 997
BbvI GCAGC 2 cut(s) 843, 955
BccI CCATC 3 cut(s) 191, 443, 829
BceAI ACGGC 3 cut(s) 294, 409, 592
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 2 cut(s) 407, 419
BcnI CCSGG 3 cut(s) 171, 337, 783
BcoDI GTCTC 3 cut(s) 516, 543, 1012
BfaI CTAG 2 cut(s) 72, 990
BfmI CTRYAG 2 cut(s) 199, 916
BfoI RGCGCY 2 cut(s) 159, 425
BfuAI ACCTGC 1 cut(s) 561
BglI GCCNNNNNGGC 2 cut(s) 764, 919
BglII AGATCT 2 cut(s) 490, 619
BisI GCNGC 7 cut(s) 175, 282, 476, 518, 830, 857, 969
BlsI GCNGC 7 cut(s) 176, 283, 477, 519, 831, 858, 970
BmcAI AGTACT 1 cut(s) 979
Bme1390I CCNGG 5 cut(s) 171, 337, 407, 419, 783
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 670
BmgT120I GGNCC 5 cut(s) 179, 338, 384, 473, 654
BmiI GGNNCC 4 cut(s) 181, 423, 741, 840
BmrFI CCNGG 5 cut(s) 171, 337, 407, 419, 783
BmrI ACTGGG 2 cut(s) 990, 998
BmsI GCATC 1 cut(s) 926
BmuI ACTGGG 2 cut(s) 990, 998
BpiI GAAGAC 2 cut(s) 126, 908
BpmI CTGGAG 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 879
BpuMI CCSGG 3 cut(s) 171, 337, 783
BsaHI GRCGYC 2 cut(s) 284, 422
BsaJI CCNNGG 5 cut(s) 169, 175, 417, 759, 782
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 7 cut(s) 77, 176, 188, 482, 701, 800, 815
Bse118I RCCGGY 3 cut(s) 208, 742, 793
Bse1I ACTGG 2 cut(s) 985, 1004
Bse3DI GCAATG 1 cut(s) 82
BseBI CCWGG 2 cut(s) 407, 419
BseDI CCNNGG 5 cut(s) 169, 175, 417, 759, 782
BseGI GGATG 3 cut(s) 504, 840, 941
BseLI CCNNNNNNNGG 7 cut(s) 77, 176, 188, 482, 701, 800, 815
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 4 cut(s) 315, 470, 485, 893
BseNI ACTGG 2 cut(s) 985, 1004
BseRI GAGGAG 1 cut(s) 649
BseSI GKGCMC 1 cut(s) 208
BseX3I CGGCCG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 843, 955
BseYI CCCAGC 1 cut(s) 800
Bsh1236I CGCG 1 cut(s) 177
Bsh1285I CGRYCG 2 cut(s) 175, 336
BshFI GGCC 6 cut(s) 30, 174, 340, 385, 475, 656
BshNI GGYRCC 1 cut(s) 421
BsiEI CGRYCG 2 cut(s) 175, 336
BsiHKAI GWGCWC 5 cut(s) 9, 208, 350, 880, 997
BsiHKCI CYCGRG 1 cut(s) 670
BsiSI CCGG 7 cut(s) 171, 209, 336, 382, 743, 782, 794
BslFI GGGAC 2 cut(s) 518, 748
BslI CCNNNNNNNGG 7 cut(s) 77, 176, 188, 482, 701, 800, 815
BsmAI GTCTC 3 cut(s) 516, 543, 1012
BsmFI GGGAC 2 cut(s) 518, 748
BsnI GGCC 6 cut(s) 30, 174, 340, 385, 475, 656
BsoBI CYCGRG 1 cut(s) 670
Bsp1286I GDGCHC 6 cut(s) 9, 208, 218, 350, 880, 997
Bsp143I GATC 6 cut(s) 323, 378, 457, 490, 530, 619
BspANI GGCC 6 cut(s) 30, 174, 340, 385, 475, 656
BspCNI CTCAG 4 cut(s) 314, 471, 486, 892
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 4 cut(s) 181, 423, 741, 840
BspMI ACCTGC 1 cut(s) 561
BspPI GGATC 3 cut(s) 331, 373, 525
BspT107I GGYRCC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 82
BsrFI RCCGGY 3 cut(s) 208, 742, 793
BsrI ACTGG 2 cut(s) 985, 1004
BssAI RCCGGY 3 cut(s) 208, 742, 793
BssECI CCNNGG 5 cut(s) 169, 175, 417, 759, 782
BssMI GATC 6 cut(s) 323, 378, 457, 490, 530, 619
BssNI GRCGYC 2 cut(s) 284, 422
BssSI CACGAG 1 cut(s) 851
BssT1I CCWWGG 1 cut(s) 759
Bst2BI CACGAG 1 cut(s) 851
Bst2UI CCWGG 2 cut(s) 407, 419
Bst4CI ACNGT 2 cut(s) 203, 605
Bst6I CTCTTC 3 cut(s) 241, 268, 1015
BstACI GRCGYC 2 cut(s) 284, 422
BstAPI GCANNNNNTGC 1 cut(s) 928
BstC8I GCNNGC 3 cut(s) 214, 432, 744
BstDEI CTNAG 4 cut(s) 301, 479, 494, 879
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 3 cut(s) 504, 840, 941
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 2 cut(s) 159, 425
BstHHI GCGC 2 cut(s) 158, 424
BstKTI GATC 6 cut(s) 326, 381, 460, 493, 533, 622
BstMAI GTCTC 3 cut(s) 516, 543, 1012
BstMBI GATC 6 cut(s) 323, 378, 457, 490, 530, 619
BstMCI CGRYCG 2 cut(s) 175, 336
BstMWI GCNNNNNNNGC 8 cut(s) 174, 391, 421, 764, 853, 875, 919, 928
BstNI CCWGG 2 cut(s) 407, 419
BstSCI CCNGG 5 cut(s) 169, 335, 405, 417, 781
BstSFI CTRYAG 2 cut(s) 199, 916
BstSLI GKGCMC 1 cut(s) 208
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 843, 955
BstV2I GAAGAC 2 cut(s) 126, 908
BstX2I RGATCY 5 cut(s) 323, 378, 490, 530, 619
BstXI CCANNNNNNTGG 1 cut(s) 406
BstYI RGATCY 5 cut(s) 323, 378, 490, 530, 619
BstZI CGGCCG 1 cut(s) 172
BsuRI GGCC 6 cut(s) 30, 174, 340, 385, 475, 656
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 3 cut(s) 504, 840, 941
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 2 cut(s) 208, 864
BveI ACCTGC 1 cut(s) 561
Cac8I GCNNGC 3 cut(s) 214, 432, 744
CaiI CAGNNNCTG 2 cut(s) 135, 1044
CfoI GCGC 2 cut(s) 158, 424
Cfr10I RCCGGY 3 cut(s) 208, 742, 793
Cfr13I GGNCC 5 cut(s) 179, 338, 384, 473, 654
Cfr42I CCGCGG 1 cut(s) 178
CseI GACGC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 978
CviAII CATG 4 cut(s) 388, 535, 697, 973
CviQI GTAC 1 cut(s) 978
DdeI CTNAG 4 cut(s) 301, 479, 494, 879
DinI GGCGCC 1 cut(s) 423
DpnI GATC 6 cut(s) 325, 380, 459, 492, 532, 621
DpnII GATC 6 cut(s) 323, 378, 457, 490, 530, 619
EaeI YGGCCR 2 cut(s) 28, 172
EagI CGGCCG 1 cut(s) 172
Eam1104I CTCTTC 3 cut(s) 241, 268, 1015
EarI CTCTTC 3 cut(s) 241, 268, 1015
EciI GGCGGA 3 cut(s) 535, 847, 899
Ecl136II GAGCTC 3 cut(s) 7, 348, 878
EclXI CGGCCG 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 759
Eco24I GRGCYC 4 cut(s) 9, 218, 350, 880
Eco47I GGWCC 1 cut(s) 179
Eco47III AGCGCT 1 cut(s) 157
Eco52I CGGCCG 1 cut(s) 172
Eco53kI GAGCTC 3 cut(s) 7, 348, 878
Eco57I CTGAAG 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 670
EcoICRI GAGCTC 3 cut(s) 7, 348, 878
EcoRII CCWGG 2 cut(s) 405, 417
EcoT14I CCWWGG 1 cut(s) 759
EcoT38I GRGCYC 4 cut(s) 9, 218, 350, 880
EgeI GGCGCC 1 cut(s) 423
EheI GGCGCC 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 759
FaeI CATG 4 cut(s) 391, 538, 700, 976
FaiI YATR 6 cut(s) 33, 389, 536, 698, 963, 974
FalI AAGNNNNNCTT 4 cut(s) 893, 925, 915, 947
FaqI GGGAC 2 cut(s) 518, 748
FatI CATG 4 cut(s) 387, 534, 696, 972
Fnu4HI GCNGC 7 cut(s) 175, 282, 476, 518, 830, 857, 969
FokI GGATG 3 cut(s) 511, 847, 948
FriOI GRGCYC 4 cut(s) 9, 218, 350, 880
Fsp4HI GCNGC 7 cut(s) 175, 282, 476, 518, 830, 857, 969
FspBI CTAG 2 cut(s) 72, 990
GlaI GCGC 2 cut(s) 157, 423
GluI GCNGC 7 cut(s) 175, 282, 476, 518, 830, 857, 969
GsaI CCCAGC 1 cut(s) 804
GsuI CTGGAG 1 cut(s) 148
HaeII RGCGCY 2 cut(s) 159, 425
HaeIII GGCC 6 cut(s) 30, 174, 340, 385, 475, 656
HapII CCGG 7 cut(s) 171, 209, 336, 382, 743, 782, 794
HgaI GACGC 1 cut(s) 273
HhaI GCGC 2 cut(s) 158, 424
Hin1I GRCGYC 2 cut(s) 284, 422
Hin1II CATG 4 cut(s) 391, 538, 700, 976
Hin6I GCGC 2 cut(s) 156, 422
HinP1I GCGC 2 cut(s) 156, 422
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 3 cut(s) 709, 719, 819
HpaII CCGG 7 cut(s) 171, 209, 336, 382, 743, 782, 794
HphI GGTGA 1 cut(s) 246
Hpy166II GTNNAC 2 cut(s) 206, 439
Hpy188I TCNGA 4 cut(s) 289, 495, 543, 624
Hpy188III TCNNGA 5 cut(s) 367, 670, 823, 851, 1014
Hpy8I GTNNAC 2 cut(s) 206, 439
Hpy99I CGWCG 2 cut(s) 289, 847
HpyAV CCTTC 3 cut(s) 71, 619, 694
HpyCH4III ACNGT 2 cut(s) 203, 605
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 206, 223, 430, 859
HpyF10VI GCNNNNNNNGC 8 cut(s) 174, 391, 421, 764, 853, 875, 919, 928
HpyF3I CTNAG 4 cut(s) 301, 479, 494, 879
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 2 cut(s) 284, 422
Hsp92II CATG 4 cut(s) 391, 538, 700, 976
HspAI GCGC 2 cut(s) 156, 422
KasI GGCGCC 1 cut(s) 421
KroI GCCGGC 1 cut(s) 742
KroNI GCCGGC 1 cut(s) 744
KspI CCGCGG 1 cut(s) 178
Kzo9I GATC 6 cut(s) 323, 378, 457, 490, 530, 619
LmnI GCTCC 7 cut(s) 4, 143, 163, 739, 784, 844, 965
Lsp1109I GCAGC 2 cut(s) 843, 955
LweI GCATC 1 cut(s) 926
MaeI CTAG 2 cut(s) 72, 990
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 638
MalI GATC 6 cut(s) 325, 380, 459, 492, 532, 621
MboI GATC 6 cut(s) 323, 378, 457, 490, 530, 619
MflI RGATCY 5 cut(s) 323, 378, 490, 530, 619
MhlI GDGCHC 6 cut(s) 9, 208, 218, 350, 880, 997
MlsI TGGCCA 1 cut(s) 30
MluCI AATT 3 cut(s) 241, 647, 727
MluNI TGGCCA 1 cut(s) 30
Mly113I GGCGCC 1 cut(s) 422
MlyI GAGTC 3 cut(s) 718, 728, 828
MmeI TCCRAC 2 cut(s) 45, 267
Mox20I TGGCCA 1 cut(s) 30
MroNI GCCGGC 1 cut(s) 742
MscI TGGCCA 1 cut(s) 30
Msp20I TGGCCA 1 cut(s) 30
MspA1I CMGCKG 3 cut(s) 177, 189, 478
MspI CCGG 7 cut(s) 171, 209, 336, 382, 743, 782, 794
MspR9I CCNGG 5 cut(s) 171, 337, 407, 419, 783
MvaI CCWGG 2 cut(s) 407, 419
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 8 cut(s) 174, 391, 421, 764, 853, 875, 919, 928
NaeI GCCGGC 1 cut(s) 744
NarI GGCGCC 1 cut(s) 422
NciI CCSGG 3 cut(s) 171, 337, 783
NdeII GATC 6 cut(s) 323, 378, 457, 490, 530, 619
NgoMIV GCCGGC 1 cut(s) 742
NlaIII CATG 4 cut(s) 391, 538, 700, 976
NlaIV GGNNCC 4 cut(s) 181, 423, 741, 840
NmeAIII GCCGAG 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 670
PcsI WCGNNNNNNNCGW 1 cut(s) 743
PdiI GCCGGC 1 cut(s) 744
PkrI GCNGC 7 cut(s) 176, 283, 477, 519, 831, 858, 970
PleI GAGTC 3 cut(s) 717, 727, 827
PluTI GGCGCC 1 cut(s) 425
PpsI GAGTC 3 cut(s) 717, 727, 827
Psp124BI GAGCTC 3 cut(s) 9, 350, 880
Psp6I CCWGG 2 cut(s) 405, 417
PspFI CCCAGC 1 cut(s) 800
PspGI CCWGG 2 cut(s) 405, 417
PspN4I GGNNCC 4 cut(s) 181, 423, 741, 840
PspPI GGNCC 5 cut(s) 179, 338, 384, 473, 654
PstNI CAGNNNCTG 2 cut(s) 135, 1044
PsuI RGATCY 5 cut(s) 323, 378, 490, 530, 619
RsaI GTAC 1 cut(s) 979
RsaNI GTAC 1 cut(s) 978
SacI GAGCTC 3 cut(s) 9, 350, 880
SacII CCGCGG 1 cut(s) 178
SatI GCNGC 7 cut(s) 175, 282, 476, 518, 830, 857, 969
Sau3AI GATC 6 cut(s) 323, 378, 457, 490, 530, 619
Sau96I GGNCC 5 cut(s) 179, 338, 384, 473, 654
ScaI AGTACT 1 cut(s) 979
SchI GAGTC 3 cut(s) 718, 728, 828
ScrFI CCNGG 5 cut(s) 171, 337, 407, 419, 783
SduI GDGCHC 6 cut(s) 9, 208, 218, 350, 880, 997
SfaNI GCATC 1 cut(s) 926
SfcI CTRYAG 2 cut(s) 199, 916
SfoI GGCGCC 1 cut(s) 423
Sfr274I CTCGAG 1 cut(s) 670
Sfr303I CCGCGG 1 cut(s) 178
SgrAI CRCCGGYG 1 cut(s) 208
SgrBI CCGCGG 1 cut(s) 178
SinI GGWCC 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 670
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
Sse9I AATT 3 cut(s) 241, 647, 727
SspDI GGCGCC 1 cut(s) 421
SspMI CTAG 2 cut(s) 72, 990
SstI GAGCTC 3 cut(s) 9, 350, 880
StyD4I CCNGG 5 cut(s) 169, 335, 405, 417, 781
StyI CCWWGG 1 cut(s) 759
TaaI ACNGT 2 cut(s) 203, 605
TaiI ACGT 1 cut(s) 153
TaqI TCGA 5 cut(s) 57, 294, 317, 465, 671
TasI AATT 3 cut(s) 241, 647, 727
TatI WGTACW 1 cut(s) 977
TauI GCSGC 5 cut(s) 177, 284, 478, 520, 832
TscAI CASTG 2 cut(s) 208, 871
TseI GCWGC 2 cut(s) 856, 968
TspDTI ATGAA 3 cut(s) 404, 600, 713
TspGWI ACGGA 3 cut(s) 752, 831, 831
TspRI CASTG 2 cut(s) 208, 871
VneI GTGCAC 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 3 cut(s) 241, 647, 727
XhoI CTCGAG 1 cut(s) 670
XspI CTAG 2 cut(s) 72, 990
ZrmI AGTACT 1 cut(s) 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.