Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015918

Physical Location & Seq

Genomic Coordinates Reverse (-)

19511717 .. 19512728

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGAATCGGTGAAGAAAGCACAAAGCCTATTTGGGGGAGCGTGAGCCACACGTCTTCAGGCTACGCTCTCAACGGCAAAATCATGCTCTCCTCCGTGATCGTTCTATTCGTCGCCGTTATTATGATCCTCTGCTTCCACAGCTACGCCCGTTGGTTATTCCGTCGTCACAACCGTCGCATTCGCCGCCGTATTCGTTCTCACCTCCGCACTCTCTCCGCCTCACCCCGAGACCAAGCTCTCGACCAGGCTGTTCTCGACAAGATTCCGATCTTCGTTTACTCCTCCAAGAATCCACCACCACCAGAAGAGAAGGAGGAGTGCTCCGTCTGCTTGTCGGAGTTCGAGGAAGAAGACGAAGGCCGTCTTCTTCCTAAATGTGGCCACTCTTTTCACGTCGACTGCATCGATACTTGGTTCCGTTCCAGATCCACTTGCCCGCTTTGCAGAGCTCCGGTTCAACCCCCGTTTCAGGTCATTGAAACCGGTTCTTCTTCTTCTTCTTCGCCGTTGACATTTCCGACGGAGGGTTGCGAGAGAGAACCGATTGACCTCGCCGGTATCATTGTGGATATTTCCAGAGAAGTTGAATTTGAAGGCTCAAATCCGGGTCTACCCATCGAAAACGGATCAAAGTTTCCGGGTAGTCGGGTTTTGTCTTTAAAAAGGCTATGGAGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005798 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030100 GO:0030163 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0032879 GO:0033554 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0047484 GO:0048364 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051301 GO:0051603 GO:0051716 GO:0060627 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071214 GO:0071470 GO:0071704 GO:0071944 GO:0080134 GO:0097708 GO:0099402 GO:0104004 GO:0140096 GO:1901000 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

227

Amino Acids

25.47

Weight (kDa)

7.0

Isoelectric Point (pI)

69.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	106 - 150	5.3e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	107 - 150	3.5e-15	Ring finger domain
zf-RING_11	PF17123	107 - 136	5.2e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	107 - 149	1.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	107 - 150	9.6e-08	zinc-RING finger domain
zf-C3HC4	PF00097	108 - 149	7e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	108 - 147	6.1e-08	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47560 AT3G62690
fragaria_vesca	FvH4_2g25940
malus_domestica	MD11G1307700.v1.1
prunus_persica	Prupe.8G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0294261
rosa_laevigata	RLG00000011883
rosa_multiflora	Rmu_co8478183.1_g000001 Rmu_sc0003996.1_g000004
rosa_rugosa	Rorug06G0243000
rosa_samantha	Rh6AG355500 Rh6BG362200 Rh6CG369500 Rh6DG356200
rosa_wichuraiana	Rw6G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	399, 613
AciI	CCGC	4 cut(s)	187, 208, 219, 440
AclWI	GGATC	3 cut(s)	121, 423, 637
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	590
AcuI	CTGAAG	1 cut(s)	42
AfiI	CCNNNNNNNGG	4 cut(s)	35, 380, 472, 527
AflIII	ACRYGT	1 cut(s)	51
AgeI	ACCGGT	1 cut(s)	485
AgsI	TTSAA	4 cut(s)	461, 482, 590, 596
AjiI	CACGTC	2 cut(s)	54, 397
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	144, 239, 452
AluI	AGCT	3 cut(s)	144, 239, 452
Alw21I	GWGCWC	2 cut(s)	326, 454
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	3 cut(s)	121, 423, 637
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	2 cut(s)	361, 382
ApoI	RAATTY	1 cut(s)	590
AsiGI	ACCGGT	1 cut(s)	485
AsuC2I	CCSGG	2 cut(s)	609, 642
AsuHPI	GGTGA	3 cut(s)	23, 194, 216
AvaI	CYCGRG	1 cut(s)	228
BalI	TGGCCA	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	454
BbsI	GAAGAC	3 cut(s)	48, 359, 360
Bbv12I	GWGCWC	2 cut(s)	326, 454
BccI	CCATC	1 cut(s)	626
BceAI	ACGGC	5 cut(s)	91, 101, 174, 348, 493
BciT130I	CCWGG	1 cut(s)	248
BcnI	CCSGG	2 cut(s)	609, 642
BcoDI	GTCTC	1 cut(s)	225
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	3 cut(s)	248, 609, 642
BmeT110I	CYCGRG	1 cut(s)	228
BmgBI	CACGTC	2 cut(s)	54, 397
BmiI	GGNNCC	1 cut(s)	419
BmrFI	CCNGG	3 cut(s)	248, 609, 642
BmsI	GCATC	1 cut(s)	414
BpiI	GAAGAC	3 cut(s)	48, 359, 360
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpuMI	CCSGG	2 cut(s)	609, 642
Bsa29I	ATCGAT	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	225
BsaWI	WCCGGW	2 cut(s)	454, 485
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 380, 472, 527
Bse118I	RCCGGY	2 cut(s)	485, 557
Bse8I	GATNNNNATC	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	248
BseCI	ATCGAT	1 cut(s)	408
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	4 cut(s)	35, 380, 472, 527
BseRI	GAGGAG	3 cut(s)	82, 274, 332
BshFI	GGCC	2 cut(s)	363, 384
BshTI	ACCGGT	1 cut(s)	485
BshVI	ATCGAT	1 cut(s)	408
BsiHKAI	GWGCWC	2 cut(s)	326, 454
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	5 cut(s)	455, 486, 558, 608, 641
BslI	CCNNNNNNNGG	4 cut(s)	35, 380, 472, 527
BsmAI	GTCTC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	2 cut(s)	363, 384
Bso31I	GGTCTC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	326, 454
Bsp143I	GATC	5 cut(s)	99, 126, 270, 428, 629
BspACI	CCGC	4 cut(s)	187, 208, 219, 440
BspANI	GGCC	2 cut(s)	363, 384
BspDI	ATCGAT	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	419
BspPI	GGATC	3 cut(s)	121, 423, 637
BspTNI	GGTCTC	1 cut(s)	225
BsrFI	RCCGGY	2 cut(s)	485, 557
BssAI	RCCGGY	2 cut(s)	485, 557
BssMI	GATC	5 cut(s)	99, 126, 270, 428, 629
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	440
BstKTI	GATC	5 cut(s)	102, 129, 273, 431, 632
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	5 cut(s)	99, 126, 270, 428, 629
BstMWI	GCNNNNNNNGC	4 cut(s)	141, 186, 330, 444
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	246, 607, 640
BstV2I	GAAGAC	3 cut(s)	48, 359, 360
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
Bsu15I	ATCGAT	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	363, 384
BsuTUI	ATCGAT	1 cut(s)	408
BtrI	CACGTC	2 cut(s)	54, 397
Cac8I	GCNNGC	1 cut(s)	440
Cfr10I	RCCGGY	2 cut(s)	485, 557
ClaI	ATCGAT	1 cut(s)	408
CspAI	ACCGGT	1 cut(s)	485
CviAII	CATG	1 cut(s)	85
DpnI	GATC	5 cut(s)	101, 128, 272, 430, 631
DpnII	GATC	5 cut(s)	99, 126, 270, 428, 629
DraI	TTTAAA	1 cut(s)	663
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	452
Eco24I	GRGCYC	1 cut(s)	454
Eco31I	GGTCTC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	228
EcoICRI	GAGCTC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	454
FaeI	CATG	1 cut(s)	88
FaiI	YATR	3 cut(s)	86, 125, 673
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	447
FblI	GTMKAC	2 cut(s)	399, 613
Fnu4HI	GCNGC	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	363, 384
HapII	CCGG	5 cut(s)	455, 486, 558, 608, 641
Hin1II	CATG	1 cut(s)	88
HincII	GTYRAC	2 cut(s)	400, 513
HindII	GTYRAC	2 cut(s)	400, 513
HinfI	GANTC	3 cut(s)	6, 265, 292
HpaII	CCGG	5 cut(s)	455, 486, 558, 608, 641
HphI	GGTGA	3 cut(s)	23, 194, 216
Hpy166II	GTNNAC	4 cut(s)	280, 400, 513, 614
Hpy188I	TCNGA	4 cut(s)	270, 340, 522, 683
Hpy188III	TCNNGA	4 cut(s)	242, 257, 426, 579
Hpy8I	GTNNAC	4 cut(s)	280, 400, 513, 614
Hpy99I	CGWCG	5 cut(s)	116, 168, 180, 401, 526
HpyAV	CCTTC	3 cut(s)	307, 353, 590
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	2 cut(s)	53, 396
HpyCH4V	TGCA	2 cut(s)	405, 447
HpyF10VI	GCNNNNNNNGC	4 cut(s)	141, 186, 330, 444
HpySE526I	ACGT	2 cut(s)	53, 396
Hsp92II	CATG	1 cut(s)	88
Kzo9I	GATC	5 cut(s)	99, 126, 270, 428, 629
LmnI	GCTCC	4 cut(s)	39, 329, 457, 675
LweI	GCATC	1 cut(s)	414
MaeII	ACGT	2 cut(s)	53, 396
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	5 cut(s)	101, 128, 272, 430, 631
MboI	GATC	5 cut(s)	99, 126, 270, 428, 629
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	2 cut(s)	326, 454
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	1 cut(s)	590
MluNI	TGGCCA	1 cut(s)	384
MmeI	TCCRAC	2 cut(s)	318, 545
MnlI	CCTC	9 cut(s)	103, 140, 215, 232, 295, 310, 340, 520, 563
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	1 cut(s)	662
Msp20I	TGGCCA	1 cut(s)	384
MspI	CCGG	5 cut(s)	455, 486, 558, 608, 641
MspR9I	CCNGG	3 cut(s)	248, 609, 642
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	4 cut(s)	141, 186, 330, 444
NciI	CCSGG	2 cut(s)	609, 642
NdeII	GATC	5 cut(s)	99, 126, 270, 428, 629
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	419
NmuCI	GTSAC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	3 cut(s)	108, 172, 405
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	6, 265, 292
PinAI	ACCGGT	1 cut(s)	485
PkrI	GCNGC	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	454
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	428
SacI	GAGCTC	1 cut(s)	454
SalI	GTCGAC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	662
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	5 cut(s)	99, 126, 270, 428, 629
ScrFI	CCNGG	3 cut(s)	248, 609, 642
SduI	GDGCHC	2 cut(s)	326, 454
SetI	ASST	8 cut(s)	56, 146, 207, 241, 399, 454, 477, 555
SfaNI	GCATC	1 cut(s)	414
Sse9I	AATT	1 cut(s)	590
SsiI	CCGC	4 cut(s)	187, 208, 219, 440
SstI	GAGCTC	1 cut(s)	454
StyD4I	CCNGG	3 cut(s)	246, 607, 640
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	2 cut(s)	56, 399
TaqI	TCGA	6 cut(s)	243, 258, 345, 399, 408, 621
TasI	AATT	1 cut(s)	590
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	3 cut(s)	6, 265, 292
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
TspGWI	ACGGA	6 cut(s)	85, 152, 316, 410, 539, 642
XapI	RAATTY	1 cut(s)	590
XmiI	GTMKAC	2 cut(s)	399, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.