Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015918

Physical Location & Seq

Genomic Coordinates Reverse (-)

13525207 .. 13525821

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGATATCGTCGACCATCATAAACCCGCCAACTACGCCCTCAATGGCAAGATCATGCTCTCCTCGGTCATCATTCTTTTCGTCGTCGTCTTCGTCGTGGCTTGCTTCCACAGCTACGTCCGGCTCTGCTTCTACCGCAACCATCCCCTACTGCGCCGTCGCCGGAGACGCCTCTTCTCTCAAAATATCGTCTCGCCCACGACGGAAACCCCCAGCACCGTACCTCAGAAAGGCTTGGATCTCTCAATTCTCAAGACGCTACCTAGTTTTGTTTACTCCACGTTAACTGACGACCCGCTGCTAGAATGCGCCGTGTGCCTGTCGGAGTTCGAGCACGGAGAACGTGGTCGAGTGCTGCCCGACTGTAAGCACCCCTTTCATATAGAGTGCATAGACACTTGGTTTAAGTCGAACTCCAATTGTCCGCTTTGTAGATGTCTGGTTAGGCCGCATGTTCCGGTTCCGACACCGGAACCTCGGCACGAGGTTGTGATTACGGTGAGTGAACCGGCCGGTTCGGGAAGCGACGGGGGCGAAGAGAAAATGAGTTCGCCGCCGGGGAGTTTTTCGGCGAAGGAATGTGGGAGGAGGCCGTTGGATCTAGTGGGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005798 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030100 GO:0030163 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0032879 GO:0033554 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0047484 GO:0048364 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051301 GO:0051603 GO:0051716 GO:0060627 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071214 GO:0071470 GO:0071704 GO:0071944 GO:0080134 GO:0097708 GO:0099402 GO:0104004 GO:0140096 GO:1901000 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

205

Amino Acids

22.84

Weight (kDa)

8.06

Isoelectric Point (pI)

74.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	102 - 145	2.7e-13	Ring finger domain
zf-RING_11	PF17123	102 - 131	3.7e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	102 - 144	1.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	103 - 144	1.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	118 - 145	9.2e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47560 AT3G62690
fragaria_vesca	FvH4_2g25940
malus_domestica	MD11G1307700.v1.1
prunus_persica	Prupe.8G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0294261
rosa_laevigata	RLG00000011883
rosa_multiflora	Rmu_co8478183.1_g000001 Rmu_sc0003996.1_g000004
rosa_rugosa	Rorug06G0243000
rosa_samantha	Rh6AG355500 Rh6BG362200 Rh6CG369500 Rh6DG356200
rosa_wichuraiana	Rw6G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	6 cut(s)	27, 136, 296, 425, 449, 554
AclWI	GGATC	2 cut(s)	246, 606
AcoI	YGGCCR	1 cut(s)	510
AcyI	GRCGYC	1 cut(s)	169
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	230
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	160, 196
AlwI	GGATC	2 cut(s)	246, 606
AoxI	GGCC	3 cut(s)	446, 510, 590
ApeKI	GCWGC	2 cut(s)	298, 355
AspLEI	GCGC	2 cut(s)	156, 311
AsuC2I	CCSGG	1 cut(s)	558
AsuHPI	GGTGA	1 cut(s)	511
BauI	CACGAG	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	285, 342
BccI	CCATC	2 cut(s)	24, 150
BceAI	ACGGC	3 cut(s)	141, 296, 577
BcnI	CCSGG	1 cut(s)	558
BcoDI	GTCTC	2 cut(s)	160, 196
BfaI	CTAG	3 cut(s)	264, 302, 602
BisI	GCNGC	4 cut(s)	299, 356, 449, 554
BlsI	GCNGC	4 cut(s)	300, 357, 450, 555
Bme1390I	CCNGG	1 cut(s)	558
BmiI	GGNNCC	2 cut(s)	462, 474
BmrFI	CCNGG	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	169
BsaJI	CCNNGG	3 cut(s)	63, 476, 557
BsaWI	WCCGGW	2 cut(s)	457, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse118I	RCCGGY	2 cut(s)	508, 512
BseDI	CCNNGG	3 cut(s)	63, 476, 557
BseGI	GGATG	2 cut(s)	142, 615
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	239
BseRI	GAGGAG	2 cut(s)	52, 601
BseX3I	CGGCCG	1 cut(s)	510
BseXI	GCAGC	2 cut(s)	285, 342
BseYI	CCCAGC	1 cut(s)	212
Bsh1285I	CGRYCG	1 cut(s)	513
BshFI	GGCC	3 cut(s)	448, 512, 592
BsiEI	CGRYCG	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	7 cut(s)	121, 163, 458, 470, 509, 513, 557
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	2 cut(s)	160, 196
BsmBI	CGTCTC	2 cut(s)	160, 196
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	3 cut(s)	448, 512, 592
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	3 cut(s)	51, 238, 598
BspACI	CCGC	6 cut(s)	27, 136, 296, 425, 449, 554
BspANI	GGCC	3 cut(s)	448, 512, 592
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	462, 474
BspPI	GGATC	2 cut(s)	246, 606
BsrFI	RCCGGY	2 cut(s)	508, 512
BssAI	RCCGGY	2 cut(s)	508, 512
BssECI	CCNNGG	3 cut(s)	63, 476, 557
BssMI	GATC	3 cut(s)	51, 238, 598
BssNI	GRCGYC	1 cut(s)	169
BssSI	CACGAG	1 cut(s)	482
Bst2BI	CACGAG	1 cut(s)	482
Bst4CI	ACNGT	3 cut(s)	220, 365, 499
Bst6I	CTCTTC	2 cut(s)	179, 531
BstACI	GRCGYC	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	225
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	142, 615
BstHHI	GCGC	2 cut(s)	156, 311
BstKTI	GATC	3 cut(s)	54, 241, 601
BstMAI	GTCTC	2 cut(s)	160, 196
BstMBI	GATC	3 cut(s)	51, 238, 598
BstMCI	CGRYCG	1 cut(s)	513
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 111, 135, 168, 315, 531
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	556
BstV1I	GCAGC	2 cut(s)	285, 342
BstV2I	GAAGAC	1 cut(s)	82
BstX2I	RGATCY	2 cut(s)	238, 598
BstYI	RGATCY	2 cut(s)	238, 598
BstZI	CGGCCG	1 cut(s)	510
BsuRI	GGCC	3 cut(s)	448, 512, 592
BtsCI	GGATG	2 cut(s)	142, 615
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	2 cut(s)	156, 311
Cfr10I	RCCGGY	2 cut(s)	508, 512
CseI	GACGC	2 cut(s)	177, 265
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	2 cut(s)	55, 452
CviJI	RGCY	7 cut(s)	101, 114, 124, 234, 448, 512, 592
CviKI_1	RGCY	7 cut(s)	101, 114, 124, 234, 448, 512, 592
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	3 cut(s)	53, 240, 600
DpnII	GATC	3 cut(s)	51, 238, 598
EaeI	YGGCCR	1 cut(s)	510
EagI	CGGCCG	1 cut(s)	510
Eam1104I	CTCTTC	2 cut(s)	179, 531
EarI	CTCTTC	2 cut(s)	179, 531
EclXI	CGGCCG	1 cut(s)	510
Eco32I	GATATC	1 cut(s)	7
Eco52I	CGGCCG	1 cut(s)	510
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoRV	GATATC	1 cut(s)	7
Esp3I	CGTCTC	2 cut(s)	160, 196
FaeI	CATG	2 cut(s)	58, 455
FaiI	YATR	6 cut(s)	21, 56, 381, 383, 392, 453
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FatI	CATG	2 cut(s)	54, 451
FauI	CCCGC	2 cut(s)	34, 303
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	4 cut(s)	299, 356, 449, 554
FokI	GGATG	1 cut(s)	129
Fsp4HI	GCNGC	4 cut(s)	299, 356, 449, 554
FspBI	CTAG	3 cut(s)	264, 302, 602
GlaI	GCGC	2 cut(s)	155, 310
GluI	GCNGC	4 cut(s)	299, 356, 449, 554
GsaI	CCCAGC	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	448, 512, 592
HapII	CCGG	7 cut(s)	121, 163, 458, 470, 509, 513, 557
HgaI	GACGC	2 cut(s)	177, 265
HhaI	GCGC	2 cut(s)	156, 311
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	2 cut(s)	58, 455
Hin6I	GCGC	2 cut(s)	154, 309
HinP1I	GCGC	2 cut(s)	154, 309
HincII	GTYRAC	2 cut(s)	13, 285
HindII	GTYRAC	2 cut(s)	13, 285
HpaI	GTTAAC	1 cut(s)	285
HpaII	CCGG	7 cut(s)	121, 163, 458, 470, 509, 513, 557
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	4 cut(s)	13, 274, 285, 506
Hpy188I	TCNGA	3 cut(s)	228, 325, 465
Hpy188III	TCNNGA	2 cut(s)	253, 519
Hpy8I	GTNNAC	4 cut(s)	13, 274, 285, 506
Hpy99I	CGWCG	7 cut(s)	14, 86, 89, 98, 162, 205, 530
HpyAV	CCTTC	1 cut(s)	568
HpyCH4III	ACNGT	3 cut(s)	220, 365, 499
HpyCH4IV	ACGT	3 cut(s)	117, 281, 343
HpyCH4V	TGCA	1 cut(s)	390
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 111, 135, 168, 315, 531
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	3 cut(s)	117, 281, 343
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	2 cut(s)	58, 455
HspAI	GCGC	2 cut(s)	154, 309
KspAI	GTTAAC	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	51, 238, 598
Lsp1109I	GCAGC	2 cut(s)	285, 342
MaeI	CTAG	3 cut(s)	264, 302, 602
MaeII	ACGT	3 cut(s)	117, 281, 343
MalI	GATC	3 cut(s)	53, 240, 600
MboI	GATC	3 cut(s)	51, 238, 598
MboII	GAAGA	3 cut(s)	82, 166, 548
MfeI	CAATTG	1 cut(s)	418
MflI	RGATCY	2 cut(s)	238, 598
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	2 cut(s)	246, 418
MmeI	TCCRAC	3 cut(s)	303, 488, 576
MnlI	CCTC	8 cut(s)	50, 73, 182, 234, 478, 486, 579, 582
MseI	TTAA	2 cut(s)	284, 405
MspA1I	CMGCKG	1 cut(s)	298
MspI	CCGG	7 cut(s)	121, 163, 458, 470, 509, 513, 557
MspR9I	CCNGG	1 cut(s)	558
MunI	CAATTG	1 cut(s)	418
Mva1269I	GAATGC	1 cut(s)	311
MwoI	GCNNNNNNNGC	6 cut(s)	35, 111, 135, 168, 315, 531
NciI	CCSGG	1 cut(s)	558
NdeII	GATC	3 cut(s)	51, 238, 598
NlaIII	CATG	2 cut(s)	58, 455
NlaIV	GGNNCC	2 cut(s)	462, 474
NmeAIII	GCCGAG	1 cut(s)	457
NspI	RCATGY	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 93
PctI	GAATGC	1 cut(s)	311
PkrI	GCNGC	4 cut(s)	300, 357, 450, 555
PspFI	CCCAGC	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	462, 474
PsuI	RGATCY	2 cut(s)	238, 598
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SalI	GTCGAC	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	284, 405
SatI	GCNGC	4 cut(s)	299, 356, 449, 554
Sau3AI	GATC	3 cut(s)	51, 238, 598
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	8 cut(s)	116, 120, 226, 265, 284, 346, 478, 489
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	246, 418
SsiI	CCGC	6 cut(s)	27, 136, 296, 425, 449, 554
SspMI	CTAG	3 cut(s)	264, 302, 602
StyD4I	CCNGG	1 cut(s)	556
TaaI	ACNGT	3 cut(s)	220, 365, 499
TaiI	ACGT	3 cut(s)	120, 284, 346
TaqI	TCGA	4 cut(s)	12, 330, 349, 410
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	2 cut(s)	246, 418
TauI	GCSGC	2 cut(s)	451, 556
Tru1I	TTAA	2 cut(s)	284, 405
Tru9I	TTAA	2 cut(s)	284, 405
TseI	GCWGC	2 cut(s)	298, 355
TspDTI	ATGAA	1 cut(s)	368
TspGWI	ACGGA	2 cut(s)	218, 351
XagI	CCTNNNNNAGG	1 cut(s)	228
XceI	RCATGY	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	3 cut(s)	264, 302, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.