Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015918

Physical Location & Seq

Genomic Coordinates Reverse (-)

42182338 .. 42183093

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1307700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGATATAGACACCCACAAACGTACCCACTACGCTTTGAACGGCAAGATCATGCTCTGCTCAGTCGTCATTCTCTTCGTCGTAGTCTTCACCATCGCTTGCTTCCACAGCTACGTCCGCTGCTTCTTCCACCGCAGTCGCCACCAACGACATCGTCGCAACCACCGCTCTCTCACCTCCCTCCTCGAGACCACTCTCTCTTCTATTACCAATCCAAAGGCCTTGGACCCCTCTGTTCTCAAAACCCTACCTGCTTTTACTTACTCTGCCACCACCGGCACCAAAAACGCCGTCGTAACACCGCTGGAGTGCGCAGTGTGCTTATCGGAGTTCGAAGATCAAGAGCAAGGCCGTCTACTGCCCATGTGCAACCATGCCTTCCATATCGACTGTATCGACACTTGGTTTCAGTCGCAGTCCAATTGTCCACTCTGCAGGGCGCCGGTACAACCCGATATTCCGGTTCCTAAGCGAGAGATTTCGCCAGAAATCTCAATAACAGTGAATGAACCCTCCGGTTCGGAGCAAGAGAGGAGTAAGGGTAACATGGGTTTTTCAAGATGCGCGTCGTCGACGAGTTTATCGCCGGAGGAATGTGGGAGGAAGCCATTCACGGAAGTGGTGGGGGTATCTGTTCTCGTGGATGAGGTGCCTAATCGTATCTGTTTCGGTTCACCCAAAAACAATTACAGCGGACAAAAATCTTCGGGTTCGGGCACCCAGATTCTGTCGTTAAAGAGGATATGGAGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005798 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030100 GO:0030163 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0032879 GO:0033554 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0047484 GO:0048364 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051301 GO:0051603 GO:0051716 GO:0060627 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071214 GO:0071470 GO:0071704 GO:0071944 GO:0080134 GO:0097708 GO:0099402 GO:0104004 GO:0140096 GO:1901000 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

252

Amino Acids

27.96

Weight (kDa)

8.61

Isoelectric Point (pI)

61.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	103 - 146	1.1e-13	Ring finger domain
zf-RING_11	PF17123	103 - 132	6.6e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	103 - 145	2.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	104 - 145	1.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	116 - 146	1.2e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47560 AT3G62690
fragaria_vesca	FvH4_2g25940
malus_domestica	MD11G1307700.v1.1
prunus_persica	Prupe.8G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0294261
rosa_laevigata	RLG00000011883
rosa_multiflora	Rmu_co8478183.1_g000001 Rmu_sc0003996.1_g000004
rosa_rugosa	Rorug06G0243000
rosa_samantha	Rh6AG355500 Rh6BG362200 Rh6CG369500 Rh6DG356200
rosa_wichuraiana	Rw6G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	313
Acc36I	ACCTGC	1 cut(s)	259
AccB1I	GGYRCC	4 cut(s)	278, 439, 649, 716
AccBSI	CCGCTC	1 cut(s)	168
AccI	GTMKAC	2 cut(s)	355, 572
AccII	CGCG	1 cut(s)	566
AciI	CCGC	5 cut(s)	118, 133, 166, 302, 693
AcyI	GRCGYC	1 cut(s)	440
AfaI	GTAC	2 cut(s)	25, 447
AgsI	TTSAA	2 cut(s)	40, 558
AleI	CACNNNNGTG	1 cut(s)	617
AluBI	AGCT	1 cut(s)	111
AluI	AGCT	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	727
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	219, 349
ApeKI	GCWGC	1 cut(s)	120
ArsI	GACNNNNNNTTYG	2 cut(s)	276, 308
Asp700I	GAANNNNTTC	1 cut(s)	608
AspLEI	GCGC	3 cut(s)	314, 442, 566
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	3 cut(s)	82, 166, 666
AsuII	TTCGAA	1 cut(s)	333
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	719
BaeI	ACNNNNGTAYC	2 cut(s)	7, 40
BanI	GGYRCC	4 cut(s)	278, 439, 649, 716
BauI	CACGAG	1 cut(s)	638
BbsI	GAAGAC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	3 cut(s)	58, 275, 336
BcoDI	GTCTC	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	433
BfoI	RGCGCY	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	6 cut(s)	228, 280, 441, 465, 651, 718
BmsI	GCATC	1 cut(s)	551
BpiI	GAAGAC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	2 cut(s)	460, 515
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bse118I	RCCGGY	2 cut(s)	275, 442
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	649
BseMII	CTCAG	1 cut(s)	75
BseRI	GAGGAG	2 cut(s)	173, 547
BseSI	GKGCMC	1 cut(s)	719
BseXI	GCAGC	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	2 cut(s)	221, 351
BshNI	GGYRCC	4 cut(s)	278, 439, 649, 716
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	5 cut(s)	276, 443, 461, 516, 587
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	221, 351
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	185
Bsp119I	TTCGAA	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	719
Bsp143I	GATC	2 cut(s)	48, 337
BspACI	CCGC	5 cut(s)	118, 133, 166, 302, 693
BspANI	GGCC	2 cut(s)	221, 351
BspCNI	CTCAG	1 cut(s)	74
BspFNI	CGCG	1 cut(s)	566
BspLI	GGNNCC	6 cut(s)	228, 280, 441, 465, 651, 718
BspMAI	CTGCAG	1 cut(s)	437
BspMI	ACCTGC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	333
BspT107I	GGYRCC	4 cut(s)	278, 439, 649, 716
BspTNI	GGTCTC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	168
BsrFI	RCCGGY	2 cut(s)	275, 442
BssAI	RCCGGY	2 cut(s)	275, 442
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	48, 337
BssNI	GRCGYC	1 cut(s)	440
BssSI	CACGAG	1 cut(s)	638
BssT1I	CCWWGG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	638
Bst4CI	ACNGT	2 cut(s)	392, 502
Bst6I	CTCTTC	2 cut(s)	80, 205
BstACI	GRCGYC	1 cut(s)	440
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	61, 468
BstF5I	GGATG	1 cut(s)	649
BstFNI	CGCG	1 cut(s)	566
BstH2I	RGCGCY	1 cut(s)	443
BstHHI	GCGC	3 cut(s)	314, 442, 566
BstKTI	GATC	2 cut(s)	51, 340
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	2 cut(s)	48, 337
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 117, 165, 318
BstSFI	CTRYAG	1 cut(s)	433
BstSLI	GKGCMC	1 cut(s)	719
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	1 cut(s)	107
BstV2I	GAAGAC	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	221, 351
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	649
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	321, 507
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	727
CfoI	GCGC	3 cut(s)	314, 442, 566
Cfr10I	RCCGGY	2 cut(s)	275, 442
Cfr13I	GGNCC	1 cut(s)	226
CseI	GACGC	1 cut(s)	555
Csp6I	GTAC	2 cut(s)	24, 446
CviAII	CATG	4 cut(s)	52, 364, 374, 547
CviJI	RGCY	4 cut(s)	111, 221, 351, 607
CviKI_1	RGCY	4 cut(s)	111, 221, 351, 607
CviQI	GTAC	2 cut(s)	24, 446
DdeI	CTNAG	2 cut(s)	61, 468
DinI	GGCGCC	1 cut(s)	441
DpnI	GATC	2 cut(s)	50, 339
DpnII	GATC	2 cut(s)	48, 337
Eam1104I	CTCTTC	2 cut(s)	80, 205
EarI	CTCTTC	2 cut(s)	80, 205
Eco130I	CCWWGG	1 cut(s)	222
Eco147I	AGGCCT	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	222
EgeI	GGCGCC	1 cut(s)	441
EheI	GGCGCC	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	4 cut(s)	55, 367, 377, 550
FaiI	YATR	9 cut(s)	8, 53, 365, 375, 384, 548, 745, 752, 754
FatI	CATG	4 cut(s)	51, 363, 373, 546
FblI	GTMKAC	2 cut(s)	355, 572
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	1 cut(s)	656
Fsp4HI	GCNGC	1 cut(s)	121
FspI	TGCGCA	1 cut(s)	313
GlaI	GCGC	3 cut(s)	313, 441, 565
GluI	GCNGC	1 cut(s)	121
GsuI	CTGGAG	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	221, 351
HapII	CCGG	5 cut(s)	276, 443, 461, 516, 587
HgaI	GACGC	1 cut(s)	555
HhaI	GCGC	3 cut(s)	314, 442, 566
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	4 cut(s)	55, 367, 377, 550
Hin6I	GCGC	3 cut(s)	312, 440, 564
HinP1I	GCGC	3 cut(s)	312, 440, 564
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HinfI	GANTC	1 cut(s)	724
HpaII	CCGG	5 cut(s)	276, 443, 461, 516, 587
HphI	GGTGA	3 cut(s)	82, 166, 666
Hpy166II	GTNNAC	4 cut(s)	356, 428, 573, 674
Hpy188I	TCNGA	2 cut(s)	328, 523
Hpy188III	TCNNGA	3 cut(s)	187, 341, 558
Hpy8I	GTNNAC	4 cut(s)	356, 428, 573, 674
Hpy99I	CGWCG	6 cut(s)	83, 159, 296, 571, 574, 577
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	2 cut(s)	392, 502
HpyCH4IV	ACGT	2 cut(s)	22, 114
HpyCH4V	TGCA	2 cut(s)	369, 435
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 117, 165, 318
HpyF3I	CTNAG	2 cut(s)	61, 468
HpySE526I	ACGT	2 cut(s)	22, 114
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	4 cut(s)	55, 367, 377, 550
HspAI	GCGC	3 cut(s)	312, 440, 564
KasI	GGCGCC	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	48, 337
LmnI	GCTCC	2 cut(s)	523, 747
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	1 cut(s)	551
MaeII	ACGT	2 cut(s)	22, 114
MaeIII	GTNAC	2 cut(s)	295, 542
MalI	GATC	2 cut(s)	50, 339
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	2 cut(s)	48, 337
MboII	GAAGA	6 cut(s)	67, 79, 118, 192, 347, 696
MfeI	CAATTG	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	719
MluCI	AATT	2 cut(s)	421, 685
Mly113I	GGCGCC	1 cut(s)	440
MroXI	GAANNNNTTC	1 cut(s)	608
MseI	TTAA	1 cut(s)	734
MslI	CAYNNNNRTG	1 cut(s)	617
MspA1I	CMGCKG	3 cut(s)	120, 304, 693
MspI	CCGG	5 cut(s)	276, 443, 461, 516, 587
MunI	CAATTG	1 cut(s)	421
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	4 cut(s)	108, 117, 165, 318
NarI	GGCGCC	1 cut(s)	440
NdeII	GATC	2 cut(s)	48, 337
NlaIII	CATG	4 cut(s)	55, 367, 377, 550
NlaIV	GGNNCC	6 cut(s)	228, 280, 441, 465, 651, 718
NsbI	TGCGCA	1 cut(s)	313
NspV	TTCGAA	1 cut(s)	333
OliI	CACNNNNGTG	1 cut(s)	617
PaeR7I	CTCGAG	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	2 cut(s)	145, 393
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	724
PflFI	GACNNNGTC	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	122
PluTI	GGCGCC	1 cut(s)	443
PspN4I	GGNNCC	6 cut(s)	228, 280, 441, 465, 651, 718
PspPI	GGNCC	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	437
PstNI	CAGNNNCTG	1 cut(s)	727
PsyI	GACNNNGTC	1 cut(s)	153
RsaI	GTAC	2 cut(s)	25, 447
RsaNI	GTAC	2 cut(s)	24, 446
RseI	CAYNNNNRTG	1 cut(s)	617
SalI	GTCGAC	1 cut(s)	571
SaqAI	TTAA	1 cut(s)	734
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	2 cut(s)	48, 337
Sau96I	GGNCC	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	719
SetI	ASST	6 cut(s)	25, 113, 117, 179, 253, 651
SfaNI	GCATC	1 cut(s)	551
SfcI	CTRYAG	1 cut(s)	433
SfoI	GGCGCC	1 cut(s)	441
Sfr274I	CTCGAG	1 cut(s)	185
SfuI	TTCGAA	1 cut(s)	333
SgrDI	CGTCGACG	1 cut(s)	571
SinI	GGWCC	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	421, 685
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	5 cut(s)	118, 133, 166, 302, 693
SspDI	GGCGCC	1 cut(s)	439
StuI	AGGCCT	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	392, 502
TaiI	ACGT	2 cut(s)	25, 117
TaqI	TCGA	5 cut(s)	186, 333, 387, 396, 572
TasI	AATT	2 cut(s)	421, 685
TfiI	GAWTC	1 cut(s)	724
Tru1I	TTAA	1 cut(s)	734
Tru9I	TTAA	1 cut(s)	734
TscAI	CASTG	2 cut(s)	321, 507
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	522
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	2 cut(s)	321, 507
Tth111I	GACNNNGTC	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	185
XmiI	GTMKAC	2 cut(s)	355, 572
XmnI	GAANNNNTTC	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.