Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015918

Physical Location & Seq

Genomic Coordinates Reverse (-)

23185348 .. 23186720

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGAAACCTGTTTGACAGTAGCAAGACTTTATGGGGAAACATGAACCATGGATCGTCACGTTACTCTCTAAACGGCAAAATCATGCTTGCTTCCGTCATCATCCTCTTCGTCGCCGTCATTTTAATCCTCTGTTTCCACAGCTACGCTAGATGGTTATTCCGCCGTCAAAACCGCCGTATTCGCCGCCGTATCAGTGCTCACCTCCGATCACTCGCCGCCGCTAGAGACCCCACCCAATCATCATCCTCCCTCTCTCCTCTTGATCCGACGGTGCTCGAGAAGATCCCTATCTTCGTCTACTCCGTTAAAACCCATGAATCTCCGCTTGAGGAATGCTCTGTTTGCTTGTCGGAATTCGAAGAAGACGACGAAGGACGTGTCCTTCCCAAATGCGGCCACGTGTTCCATGTCGATTGTATAGACACGTGGTTCCGGTCCAGATCAAGTTGTCCTCTTTGTAGAGCTCCGGTTCAACCCGCACAGCCGGTTACCGAACCCGAACCGGTTGCTGCTGTGTTTCCATCGGTTAAACCAATTGAGGATACCGAAGCCGGAAGTTCCTCTTCATCGGACGAATCCGAATCCTCGACGCCGTCTTCCTCCTCTGGTTCGCCGGTGAGGTTTCCGATGGAAGCTTGTGAGAGAGAACCGATTGATTTAGTCGGTATCATTGTGGAGATTCCCAGGGAATTTCAAGATTCTAATTCGGATCTACCCGCAGATAACGGGTCGAATCGTCGGGCTTCGTTGAAAAGGCTATGGATTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005798 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030100 GO:0030163 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0032879 GO:0033554 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0047484 GO:0048364 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051301 GO:0051603 GO:0051716 GO:0060627 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071214 GO:0071470 GO:0071704 GO:0071944 GO:0080134 GO:0097708 GO:0099402 GO:0104004 GO:0140096 GO:1901000 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

257

Amino Acids

28.59

Weight (kDa)

5.91

Isoelectric Point (pI)

79.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	112 - 155	1.4e-15	Ring finger domain
zf-RING_11	PF17123	112 - 141	1.7e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	112 - 154	2.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	112 - 155	5.1e-08	zinc-RING finger domain
zf-rbx1	PF12678	113 - 155	2.6e-10	RING-H2 zinc finger domain
zf-C3HC4	PF00097	113 - 154	6e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	113 - 152	9.6e-07	RING-type zinc-finger
zf-ANAPC11	PF12861	120 - 157	4.8e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47560 AT3G62690
fragaria_vesca	FvH4_2g25940
malus_domestica	MD11G1307700.v1.1
prunus_persica	Prupe.8G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0294261
rosa_laevigata	RLG00000011883
rosa_multiflora	Rmu_co8478183.1_g000001 Rmu_sc0003996.1_g000004
rosa_rugosa	Rorug06G0243000
rosa_samantha	Rh6AG355500 Rh6BG362200 Rh6CG369500 Rh6DG356200
rosa_wichuraiana	Rw6G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	9 cut(s)	163, 175, 187, 219, 222, 326, 396, 480, 720
AclWI	GGATC	4 cut(s)	61, 260, 280, 720
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	2 cut(s)	356, 692
AcvI	CACGTG	2 cut(s)	403, 429
AcyI	GRCGYC	1 cut(s)	593
AfiI	CCNNNNNNNGG	1 cut(s)	395
AflIII	ACRYGT	3 cut(s)	379, 402, 426
AgeI	ACCGGT	1 cut(s)	505
AgsI	TTSAA	3 cut(s)	476, 698, 754
AjiI	CACGTC	1 cut(s)	380
AjnI	CCWGG	1 cut(s)	686
AluBI	AGCT	3 cut(s)	144, 467, 638
AluI	AGCT	3 cut(s)	144, 467, 638
Alw21I	GWGCWC	3 cut(s)	202, 279, 469
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	4 cut(s)	61, 260, 280, 720
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	2 cut(s)	356, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	366, 398
AsiGI	ACCGGT	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	438
AsuHPI	GGTGA	2 cut(s)	194, 631
AsuII	TTCGAA	1 cut(s)	360
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	469
BbrPI	CACGTG	2 cut(s)	403, 429
BbsI	GAAGAC	2 cut(s)	372, 591
Bbv12I	GWGCWC	3 cut(s)	202, 279, 469
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	3 cut(s)	147, 532, 625
BceAI	ACGGC	6 cut(s)	91, 101, 150, 162, 174, 580
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BciT130I	CCWGG	1 cut(s)	688
BciVI	GTATCC	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	2 cut(s)	150, 225
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	5 cut(s)	187, 219, 222, 397, 513
BlsI	GCNGC	5 cut(s)	188, 220, 223, 398, 514
Bme1390I	CCNGG	1 cut(s)	688
Bme18I	GGWCC	1 cut(s)	438
BmeT110I	CYCGRG	1 cut(s)	278
BmgBI	CACGTC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	438
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	688
BpiI	GAAGAC	2 cut(s)	372, 591
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
Bpu14I	TTCGAA	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	350
BsaAI	YACGTR	2 cut(s)	403, 429
BsaBI	GATNNNNATC	1 cut(s)	290
BsaHI	GRCGYC	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	49, 686, 687
BsaWI	WCCGGW	3 cut(s)	435, 469, 505
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse118I	RCCGGY	3 cut(s)	487, 505, 616
Bse8I	GATNNNNATC	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	688
BseDI	CCNNGG	3 cut(s)	49, 686, 687
BseGI	GGATG	2 cut(s)	102, 245
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseRI	GAGGAG	2 cut(s)	249, 595
BseXI	GCAGC	1 cut(s)	499
BshFI	GGCC	1 cut(s)	399
BshTI	ACCGGT	1 cut(s)	505
BsiHKAI	GWGCWC	3 cut(s)	202, 279, 469
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	6 cut(s)	436, 470, 488, 506, 555, 617
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	399
Bso31I	GGTCTC	1 cut(s)	222
BsoBI	CYCGRG	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	360
Bsp1286I	GDGCHC	3 cut(s)	202, 279, 469
Bsp143I	GATC	6 cut(s)	53, 209, 265, 285, 443, 712
Bsp19I	CCATGG	1 cut(s)	49
BspACI	CCGC	9 cut(s)	163, 175, 187, 219, 222, 326, 396, 480, 720
BspANI	GGCC	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	434
BspPI	GGATC	4 cut(s)	61, 260, 280, 720
BspT104I	TTCGAA	1 cut(s)	360
BspTNI	GGTCTC	1 cut(s)	222
BsrFI	RCCGGY	3 cut(s)	487, 505, 616
BssAI	RCCGGY	3 cut(s)	487, 505, 616
BssECI	CCNNGG	3 cut(s)	49, 686, 687
BssMI	GATC	6 cut(s)	53, 209, 265, 285, 443, 712
BssNI	GRCGYC	1 cut(s)	593
BssT1I	CCWWGG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	688
Bst4CI	ACNGT	2 cut(s)	20, 274
Bst6I	CTCTTC	2 cut(s)	113, 571
BstACI	GRCGYC	1 cut(s)	593
BstBAI	YACGTR	2 cut(s)	403, 429
BstBI	TTCGAA	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	90
BstDSI	CCRYGG	1 cut(s)	49
BstEII	GGTNACC	1 cut(s)	490
BstF5I	GGATG	2 cut(s)	102, 245
BstKTI	GATC	6 cut(s)	56, 212, 268, 288, 446, 715
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	6 cut(s)	53, 209, 265, 285, 443, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 345
BstNI	CCWGG	1 cut(s)	688
BstPI	GGTNACC	1 cut(s)	490
BstSCI	CCNGG	1 cut(s)	686
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	2 cut(s)	372, 591
BstX2I	RGATCY	2 cut(s)	285, 712
BstYI	RGATCY	2 cut(s)	285, 712
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	49
BtrI	CACGTC	1 cut(s)	380
BtsCI	GGATG	2 cut(s)	102, 245
BtsIMutI	CAGTG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	90
Cfr10I	RCCGGY	3 cut(s)	487, 505, 616
Cfr13I	GGNCC	1 cut(s)	438
CseI	GACGC	1 cut(s)	601
CspAI	ACCGGT	1 cut(s)	505
CviAII	CATG	5 cut(s)	43, 50, 85, 317, 410
CviJI	RGCY	8 cut(s)	144, 399, 467, 487, 554, 638, 746, 760
CviKI_1	RGCY	8 cut(s)	144, 399, 467, 487, 554, 638, 746, 760
DpnI	GATC	6 cut(s)	55, 211, 267, 287, 445, 714
DpnII	GATC	6 cut(s)	53, 209, 265, 285, 443, 712
EaeI	YGGCCR	1 cut(s)	397
Eam1104I	CTCTTC	2 cut(s)	113, 571
EarI	CTCTTC	2 cut(s)	113, 571
EciI	GGCGGA	1 cut(s)	152
Ecl136II	GAGCTC	1 cut(s)	467
Eco130I	CCWWGG	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	469
Eco31I	GGTCTC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	467
Eco72I	CACGTG	2 cut(s)	403, 429
Eco88I	CYCGRG	1 cut(s)	278
Eco91I	GGTNACC	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	467
EcoO65I	GGTNACC	1 cut(s)	490
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	686
EcoT14I	CCWWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	5 cut(s)	46, 53, 88, 320, 413
FaiI	YATR	8 cut(s)	34, 44, 51, 86, 318, 411, 422, 763
FalI	AAGNNNNNCTT	2 cut(s)	550, 582
FatI	CATG	5 cut(s)	42, 49, 84, 316, 409
FauI	CCCGC	2 cut(s)	487, 727
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	5 cut(s)	187, 219, 222, 397, 513
FokI	GGATG	2 cut(s)	89, 232
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	5 cut(s)	187, 219, 222, 397, 513
FspBI	CTAG	2 cut(s)	150, 225
GluI	GCNGC	5 cut(s)	187, 219, 222, 397, 513
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	6 cut(s)	436, 470, 488, 506, 555, 617
HgaI	GACGC	1 cut(s)	601
Hin1I	GRCGYC	1 cut(s)	593
Hin1II	CATG	5 cut(s)	46, 53, 88, 320, 413
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	6 cut(s)	320, 578, 584, 682, 701, 736
HpaII	CCGG	6 cut(s)	436, 470, 488, 506, 555, 617
HphI	GGTGA	2 cut(s)	194, 631
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	7 cut(s)	209, 270, 355, 574, 583, 630, 712
Hpy188III	TCNNGA	4 cut(s)	263, 280, 441, 698
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	5 cut(s)	116, 274, 374, 595, 744
HpyAV	CCTTC	2 cut(s)	368, 395
HpyCH4III	ACNGT	2 cut(s)	20, 274
HpyCH4IV	ACGT	4 cut(s)	61, 379, 402, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 345
HpySE526I	ACGT	4 cut(s)	61, 379, 402, 428
Hsp92I	GRCGYC	1 cut(s)	593
Hsp92II	CATG	5 cut(s)	46, 53, 88, 320, 413
Kzo9I	GATC	6 cut(s)	53, 209, 265, 285, 443, 712
LmnI	GCTCC	1 cut(s)	472
Lsp1109I	GCAGC	1 cut(s)	499
MaeI	CTAG	2 cut(s)	150, 225
MaeII	ACGT	4 cut(s)	61, 379, 402, 428
MaeIII	GTNAC	3 cut(s)	57, 62, 490
MalI	GATC	6 cut(s)	55, 211, 267, 287, 445, 714
MboI	GATC	6 cut(s)	53, 209, 265, 285, 443, 712
MboII	GAAGA	7 cut(s)	100, 286, 295, 374, 377, 558, 591
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	2 cut(s)	285, 712
MhlI	GDGCHC	3 cut(s)	202, 279, 469
MluCI	AATT	4 cut(s)	356, 537, 692, 706
MmeI	TCCRAC	2 cut(s)	293, 333
MseI	TTAA	3 cut(s)	125, 309, 531
MspI	CCGG	6 cut(s)	436, 470, 488, 506, 555, 617
MspR9I	CCNGG	1 cut(s)	688
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	688
MwoI	GCNNNNNNNGC	2 cut(s)	183, 345
NcoI	CCATGG	1 cut(s)	49
NdeII	GATC	6 cut(s)	53, 209, 265, 285, 443, 712
NlaIII	CATG	5 cut(s)	46, 53, 88, 320, 413
NlaIV	GGNNCC	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	57
NspV	TTCGAA	1 cut(s)	360
PaeR7I	CTCGAG	1 cut(s)	278
PasI	CCCWGGG	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	2 cut(s)	303, 366
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	6 cut(s)	320, 578, 584, 682, 701, 736
PflFI	GACNNNGTC	1 cut(s)	595
PinAI	ACCGGT	1 cut(s)	505
PkrI	GCNGC	5 cut(s)	188, 220, 223, 398, 514
PmaCI	CACGTG	2 cut(s)	403, 429
PmlI	CACGTG	2 cut(s)	403, 429
Ppu21I	YACGTR	2 cut(s)	403, 429
Psp124BI	GAGCTC	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	686
PspCI	CACGTG	2 cut(s)	403, 429
PspEI	GGTNACC	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	686
PspN4I	GGNNCC	1 cut(s)	434
PspPI	GGNCC	1 cut(s)	438
PsuI	RGATCY	2 cut(s)	285, 712
PsyI	GACNNNGTC	1 cut(s)	595
SacI	GAGCTC	1 cut(s)	469
SaqAI	TTAA	3 cut(s)	125, 309, 531
SatI	GCNGC	5 cut(s)	187, 219, 222, 397, 513
Sau3AI	GATC	6 cut(s)	53, 209, 265, 285, 443, 712
Sau96I	GGNCC	1 cut(s)	438
ScrFI	CCNGG	1 cut(s)	688
SduI	GDGCHC	3 cut(s)	202, 279, 469
Sfr274I	CTCGAG	1 cut(s)	278
SfuI	TTCGAA	1 cut(s)	360
SgrAI	CRCCGGYG	1 cut(s)	616
SinI	GGWCC	1 cut(s)	438
SlaI	CTCGAG	1 cut(s)	278
SmlI	CTYRAG	2 cut(s)	278, 329
SmoI	CTYRAG	2 cut(s)	278, 329
Sse9I	AATT	4 cut(s)	356, 537, 692, 706
SsiI	CCGC	9 cut(s)	163, 175, 187, 219, 222, 326, 396, 480, 720
SspMI	CTAG	2 cut(s)	150, 225
SstI	GAGCTC	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	686
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	20, 274
TaiI	ACGT	4 cut(s)	64, 382, 405, 431
TaqI	TCGA	5 cut(s)	279, 360, 414, 590, 734
TasI	AATT	4 cut(s)	356, 537, 692, 706
TauI	GCSGC	4 cut(s)	189, 221, 224, 399
TfiI	GAWTC	6 cut(s)	320, 578, 584, 682, 701, 736
Tru1I	TTAA	3 cut(s)	125, 309, 531
Tru9I	TTAA	3 cut(s)	125, 309, 531
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	3 cut(s)	59, 333, 558
TspGWI	ACGGA	2 cut(s)	85, 295
TspRI	CASTG	1 cut(s)	202
Tth111I	GACNNNGTC	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	438
XapI	RAATTY	2 cut(s)	356, 692
XhoI	CTCGAG	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	2 cut(s)	150, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.