Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015918

Physical Location & Seq

Genomic Coordinates Forward (+)

38671576 .. 38673160

Gene Structure 1585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0243000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAGCGTCCCCGGAAAGCTGAAATCCTCGAGCTCCGAATTGGACCTGGATCGGCCCAACCTCGAGGACTACCTCCCTTCCGGAGCCTCCATCCAGCAAGAACCCGACGGCAACCTTCGCCTGCGTGATTTGCTTGATATCTCTCCCGCCCTCGCCGAGGCCGCCGGTGCCATTATCGATGACTCGTTCACGCGGTGCTTTAAGTCGAATCCTCCGGAGCCGTGGAATTGGAATATCTATTTGTTCCCTTTGTGGTGTTTCGGAGTGGTGATTCGATACTTTGTTCTATTTCCGGCAAGGGTACTGGTCTTGACTATTGGATGGATAATTTTCCTTTCGGCATTCATTCCTGTGCACTTCCTACTCAAAGGCCATGAAAAATGGAGAAAAAATTTAGAGAGATGTTTGGTGGAGTTAATGTGTAGCTTCTTTGTTGCATCTTGGACTGGGGTTGTGAAGTACCATGGACCAAAGCCTAGTATGCGGCCAAAGCAGGTTTTTGTGGCCAATCATACTTCTATGATTGATTTCATCATCCTGGAACAAATGACCGCATTTGCTGTAATTATGCAAAAGCATCCTGGATGGGTTGGTAAGCGTTATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005798 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030100 GO:0030163 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0032879 GO:0033554 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0047484 GO:0048364 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051301 GO:0051603 GO:0051716 GO:0060627 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071214 GO:0071470 GO:0071704 GO:0071944 GO:0080134 GO:0097708 GO:0099402 GO:0104004 GO:0140096 GO:1901000 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

202

Amino Acids

23.1

Weight (kDa)

8.6

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47560 AT3G62690
fragaria_vesca	FvH4_2g25940
malus_domestica	MD11G1307700.v1.1
prunus_persica	Prupe.8G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0294261
rosa_laevigata	RLG00000011883
rosa_multiflora	Rmu_co8478183.1_g000001 Rmu_sc0003996.1_g000004
rosa_rugosa	Rorug06G0243000
rosa_samantha	Rh6AG355500 Rh6BG362200 Rh6CG369500 Rh6DG356200
rosa_wichuraiana	Rw6G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	1 cut(s)	193
AccIII	TCCGGA	2 cut(s)	80, 214
AciI	CCGC	5 cut(s)	147, 162, 193, 484, 552
AclWI	GGATC	1 cut(s)	57
AcoI	YGGCCR	2 cut(s)	485, 504
AcsI	RAATTY	1 cut(s)	391
AdeI	CACNNNGTG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	303, 461
AfiI	CCNNNNNNNGG	1 cut(s)	157
AjnI	CCWGG	3 cut(s)	45, 537, 580
AluBI	AGCT	3 cut(s)	19, 33, 426
AluI	AGCT	3 cut(s)	19, 33, 426
Alw21I	GWGCWC	2 cut(s)	35, 357
Alw44I	GTGCAC	1 cut(s)	353
AlwI	GGATC	1 cut(s)	57
Ama87I	CYCGRG	2 cut(s)	28, 62
Aor13HI	TCCGGA	2 cut(s)	80, 214
AoxI	GGCC	5 cut(s)	53, 159, 370, 485, 504
ApaLI	GTGCAC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	391
AspS9I	GGNCC	3 cut(s)	43, 54, 467
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	280
AvaI	CYCGRG	2 cut(s)	28, 62
AvaII	GGWCC	2 cut(s)	43, 467
BaeGI	GKGCMC	1 cut(s)	357
BalI	TGGCCA	1 cut(s)	506
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	35
Bbv12I	GWGCWC	2 cut(s)	35, 357
BccI	CCATC	3 cut(s)	98, 315, 579
BceAI	ACGGC	2 cut(s)	124, 205
BciT130I	CCWGG	3 cut(s)	47, 539, 582
BcnI	CCSGG	1 cut(s)	12
BfaI	CTAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	2 cut(s)	162, 485
BlsI	GCNGC	2 cut(s)	163, 486
Bme1390I	CCNGG	4 cut(s)	12, 47, 539, 582
Bme18I	GGWCC	2 cut(s)	43, 467
BmeT110I	CYCGRG	2 cut(s)	28, 62
BmgT120I	GGNCC	3 cut(s)	43, 54, 467
BmiI	GGNNCC	3 cut(s)	85, 169, 219
BmrFI	CCNGG	4 cut(s)	12, 47, 539, 582
BmrI	ACTGGG	1 cut(s)	456
BmsI	GCATC	2 cut(s)	446, 586
BmuI	ACTGGG	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	12
Bsa29I	ATCGAT	1 cut(s)	177
BsaJI	CCNNGG	4 cut(s)	10, 156, 221, 463
BsaWI	WCCGGW	2 cut(s)	80, 214
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	309, 451
BseAI	TCCGGA	2 cut(s)	80, 214
BseBI	CCWGG	3 cut(s)	47, 539, 582
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	4 cut(s)	10, 156, 221, 463
BseGI	GGATG	5 cut(s)	90, 326, 534, 577, 590
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseNI	ACTGG	2 cut(s)	309, 451
BseSI	GKGCMC	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	193
BshFI	GGCC	5 cut(s)	55, 161, 372, 487, 506
BshNI	GGYRCC	1 cut(s)	167
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	35, 357
BsiHKCI	CYCGRG	2 cut(s)	28, 62
BsiSI	CCGG	5 cut(s)	12, 81, 165, 215, 293
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	5 cut(s)	55, 161, 372, 487, 506
BsoBI	CYCGRG	2 cut(s)	28, 62
Bsp1286I	GDGCHC	2 cut(s)	35, 357
Bsp13I	TCCGGA	2 cut(s)	80, 214
Bsp143I	GATC	1 cut(s)	49
Bsp19I	CCATGG	1 cut(s)	463
BspACI	CCGC	5 cut(s)	147, 162, 193, 484, 552
BspANI	GGCC	5 cut(s)	55, 161, 372, 487, 506
BspDI	ATCGAT	1 cut(s)	177
BspEI	TCCGGA	2 cut(s)	80, 214
BspFNI	CGCG	1 cut(s)	193
BspLI	GGNNCC	3 cut(s)	85, 169, 219
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	309, 451
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	4 cut(s)	10, 156, 221, 463
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	463
Bst2UI	CCWGG	3 cut(s)	47, 539, 582
BstC8I	GCNNGC	1 cut(s)	122
BstDSI	CCRYGG	2 cut(s)	221, 463
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstF5I	GGATG	5 cut(s)	90, 326, 534, 577, 590
BstFNI	CGCG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	6 cut(s)	117, 130, 161, 167, 481, 490
BstNI	CCWGG	3 cut(s)	47, 539, 582
BstSCI	CCNGG	4 cut(s)	10, 45, 537, 580
BstSLI	GKGCMC	1 cut(s)	357
BstUI	CGCG	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	5 cut(s)	55, 161, 372, 487, 506
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	2 cut(s)	221, 463
BtsCI	GGATG	5 cut(s)	90, 326, 534, 577, 590
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	3 cut(s)	43, 54, 467
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	302, 460
CviAII	CATG	2 cut(s)	374, 464
CviQI	GTAC	2 cut(s)	302, 460
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DraIII	CACNNNGTG	1 cut(s)	195
EaeI	YGGCCR	2 cut(s)	485, 504
Ecl136II	GAGCTC	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	43, 467
Eco53kI	GAGCTC	1 cut(s)	33
Eco88I	CYCGRG	2 cut(s)	28, 62
EcoICRI	GAGCTC	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	155
EcoRII	CCWGG	3 cut(s)	45, 537, 580
EcoRV	GATATC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	2 cut(s)	377, 467
FaiI	YATR	6 cut(s)	375, 465, 482, 513, 521, 569
FatI	CATG	2 cut(s)	373, 463
FauI	CCCGC	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	162, 485
FokI	GGATG	5 cut(s)	77, 333, 521, 564, 597
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	162, 485
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	2 cut(s)	162, 485
HaeIII	GGCC	5 cut(s)	55, 161, 372, 487, 506
HapII	CCGG	5 cut(s)	12, 81, 165, 215, 293
Hin1II	CATG	2 cut(s)	377, 467
HinfI	GANTC	3 cut(s)	182, 208, 271
HpaII	CCGG	5 cut(s)	12, 81, 165, 215, 293
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	189, 355
Hpy188I	TCNGA	2 cut(s)	37, 263
Hpy188III	TCNNGA	3 cut(s)	81, 215, 310
Hpy8I	GTNNAC	2 cut(s)	189, 355
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	87, 125
HpyCH4V	TGCA	3 cut(s)	355, 437, 571
HpyF10VI	GCNNNNNNNGC	6 cut(s)	117, 130, 161, 167, 481, 490
Hsp92II	CATG	2 cut(s)	377, 467
Kpn2I	TCCGGA	2 cut(s)	80, 214
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	3 cut(s)	38, 83, 217
LweI	GCATC	2 cut(s)	446, 586
MaeI	CTAG	1 cut(s)	477
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	35, 357
MlsI	TGGCCA	1 cut(s)	506
MluCI	AATT	5 cut(s)	38, 226, 327, 391, 564
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	8 cut(s)	37, 58, 71, 83, 97, 151, 161, 222
Mox20I	TGGCCA	1 cut(s)	506
MroI	TCCGGA	2 cut(s)	80, 214
MscI	TGGCCA	1 cut(s)	506
MseI	TTAA	2 cut(s)	201, 416
MslI	CAYNNNNRTG	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	506
MspI	CCGG	5 cut(s)	12, 81, 165, 215, 293
MspR9I	CCNGG	4 cut(s)	12, 47, 539, 582
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	3 cut(s)	47, 539, 582
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	6 cut(s)	117, 130, 161, 167, 481, 490
NciI	CCSGG	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	463
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	377, 467
NlaIV	GGNNCC	3 cut(s)	85, 169, 219
NmeAIII	GCCGAG	1 cut(s)	181
PaeR7I	CTCGAG	2 cut(s)	28, 62
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	208, 271
PfoI	TCCNGGA	2 cut(s)	537, 580
PkrI	GCNGC	2 cut(s)	163, 486
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	3 cut(s)	45, 537, 580
PspGI	CCWGG	3 cut(s)	45, 537, 580
PspN4I	GGNNCC	3 cut(s)	85, 169, 219
PspPI	GGNCC	3 cut(s)	43, 54, 467
PspXI	VCTCGAGB	2 cut(s)	28, 62
RsaI	GTAC	2 cut(s)	303, 461
RsaNI	GTAC	2 cut(s)	302, 460
RseI	CAYNNNNRTG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	201, 416
SatI	GCNGC	2 cut(s)	162, 485
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	3 cut(s)	43, 54, 467
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	4 cut(s)	12, 47, 539, 582
SduI	GDGCHC	2 cut(s)	35, 357
SetI	ASST	8 cut(s)	21, 35, 48, 63, 75, 117, 428, 498
SfaNI	GCATC	2 cut(s)	446, 586
Sfr274I	CTCGAG	2 cut(s)	28, 62
SgrAI	CRCCGGYG	1 cut(s)	164
SinI	GGWCC	2 cut(s)	43, 467
SlaI	CTCGAG	2 cut(s)	28, 62
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	28, 62
SmoI	CTYRAG	2 cut(s)	28, 62
Sse9I	AATT	5 cut(s)	38, 226, 327, 391, 564
SsiI	CCGC	5 cut(s)	147, 162, 193, 484, 552
SspMI	CTAG	1 cut(s)	477
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	4 cut(s)	10, 45, 537, 580
StyI	CCWWGG	1 cut(s)	463
TaqI	TCGA	5 cut(s)	29, 63, 177, 206, 274
TasI	AATT	5 cut(s)	38, 226, 327, 391, 564
TauI	GCSGC	2 cut(s)	164, 487
TfiI	GAWTC	2 cut(s)	208, 271
Tru1I	TTAA	2 cut(s)	201, 416
Tru9I	TTAA	2 cut(s)	201, 416
TspDTI	ATGAA	3 cut(s)	334, 390, 520
VneI	GTGCAC	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	43, 467
XagI	CCTNNNNNAGG	1 cut(s)	155
XapI	RAATTY	1 cut(s)	391
XhoI	CTCGAG	2 cut(s)	28, 62
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.