Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015918

Physical Location & Seq

Genomic Coordinates Forward (+)

20911864 .. 20913348

Gene Structure 1485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGATAACAATCAAAAACCCGCCAACTACGCCCTCAACGGCAAGATCATGCTCTGCTCCGTCATCATTCTCTTTGTCGTCGTCTTCGTCGTCGCCTGCTTCCACAGTTCCTTCCGCCTCTGCTTCCACCGCAACCATCCCCGCCGCCGCCGTCGCCGGAGTCGACTCATCTTCTCTCGAAATAATATCATCTCCCCCACGACCAGCAACAACGTATCTCGGAAGGGCTTGGATCTCTCGATTCTCAAGACGCTACCTAGCTTTGTATACTCCATGTCAGCAGCTCACGACCCGCTGCTAGAGTGCGCCGTGTGTCTGTCGGTGTTCGAGGACGGAGAACGTGGTCGTGTGTTGCCCAACTGTAAGCACGCGTTTCATATAGAATGCATAGACACTTGGTTCCAGTCAAACTCGAATTGTCCGCTTTGTAGATGTCTGGTCCGGCTGGATGTTACCGCTCCGATGCCGGAAGTTGTGATCACGGTGAGTGAAGAACCGGCCGGTTCGGGAAGCGAGGAAGGTGAAGACAAAATGGGGTCGCCTTCGGTGAGGTTTTCGGTGGAGGAGTGTGGGAGGAGGCCATTGGATCTAGTGGGGATGGCGATGGAGGATAGGGTAAGGGATTTTCGGTGGCCGCAAAGTTATGGGGGGAAATGTTCTGGAGATCAGATTGTATCGATGAAGAGGATTTGGAGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005798 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030100 GO:0030163 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0032879 GO:0033554 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0047484 GO:0048364 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051301 GO:0051603 GO:0051716 GO:0060627 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071214 GO:0071470 GO:0071704 GO:0071944 GO:0080134 GO:0097708 GO:0099402 GO:0104004 GO:0140096 GO:1901000 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

234

Amino Acids

26.32

Weight (kDa)

8.76

Isoelectric Point (pI)

74.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	101 - 144	9.9e-14	Ring finger domain
zf-RING_11	PF17123	101 - 130	9.2e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	101 - 143	2.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	102 - 143	9.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	116 - 144	8.7e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47560 AT3G62690
fragaria_vesca	FvH4_2g25940
malus_domestica	MD11G1307700.v1.1
prunus_persica	Prupe.8G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0294261
rosa_laevigata	RLG00000011883
rosa_multiflora	Rmu_co8478183.1_g000001 Rmu_sc0003996.1_g000004
rosa_rugosa	Rorug06G0243000
rosa_samantha	Rh6AG355500 Rh6BG362200 Rh6CG369500 Rh6DG356200
rosa_wichuraiana	Rw6G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	458
AccI	GTMKAC	2 cut(s)	163, 267
AccII	CGCG	1 cut(s)	371
AclWI	GGATC	2 cut(s)	240, 594
AcoI	YGGCCR	2 cut(s)	498, 632
AflIII	ACRYGT	1 cut(s)	369
AluBI	AGCT	2 cut(s)	261, 284
AluI	AGCT	2 cut(s)	261, 284
AlwI	GGATC	2 cut(s)	240, 594
AoxI	GGCC	3 cut(s)	498, 578, 632
ApeKI	GCWGC	2 cut(s)	281, 295
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	439
AsuHPI	GGTGA	3 cut(s)	496, 533, 559
AvaII	GGWCC	1 cut(s)	439
BbsI	GAAGAC	2 cut(s)	76, 531
BbvI	GCAGC	2 cut(s)	282, 293
BccI	CCATC	3 cut(s)	144, 592, 598
BceAI	ACGGC	3 cut(s)	55, 135, 293
BclI	TGATCA	1 cut(s)	477
BfaI	CTAG	3 cut(s)	258, 299, 590
BisI	GCNGC	5 cut(s)	145, 148, 282, 296, 635
BlsI	GCNGC	5 cut(s)	146, 149, 283, 297, 636
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	1 cut(s)	401
BmsI	GCATC	1 cut(s)	453
BpiI	GAAGAC	2 cut(s)	76, 531
BpmI	CTGGAG	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	9
Bse118I	RCCGGY	2 cut(s)	496, 500
Bse1I	ACTGG	1 cut(s)	403
Bse8I	GATNNNNATC	1 cut(s)	9
BseCI	ATCGAT	1 cut(s)	677
BseGI	GGATG	3 cut(s)	136, 454, 603
BseJI	GATNNNNATC	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	2 cut(s)	578, 589
BseX3I	CGGCCG	1 cut(s)	498
BseXI	GCAGC	2 cut(s)	282, 293
Bsh1236I	CGCG	1 cut(s)	371
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	3 cut(s)	500, 580, 634
BshVI	ATCGAT	1 cut(s)	677
BsiEI	CGRYCG	1 cut(s)	501
BsiSI	CCGG	5 cut(s)	157, 442, 467, 497, 501
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	3 cut(s)	500, 580, 634
Bsp143I	GATC	5 cut(s)	45, 232, 477, 586, 664
BspANI	GGCC	3 cut(s)	500, 580, 634
BspDI	ATCGAT	1 cut(s)	677
BspFNI	CGCG	1 cut(s)	371
BspLI	GGNNCC	1 cut(s)	401
BspPI	GGATC	2 cut(s)	240, 594
BsrBI	CCGCTC	1 cut(s)	458
BsrFI	RCCGGY	2 cut(s)	496, 500
BsrI	ACTGG	1 cut(s)	403
BssAI	RCCGGY	2 cut(s)	496, 500
BssMI	GATC	5 cut(s)	45, 232, 477, 586, 664
BssNAI	GTATAC	1 cut(s)	268
Bst1107I	GTATAC	1 cut(s)	268
Bst4CI	ACNGT	3 cut(s)	107, 362, 484
Bst6I	CTCTTC	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	97, 369
BstF5I	GGATG	3 cut(s)	136, 454, 603
BstFNI	CGCG	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	5 cut(s)	48, 235, 480, 589, 667
BstMBI	GATC	5 cut(s)	45, 232, 477, 586, 664
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 129, 153
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	2 cut(s)	282, 293
BstV2I	GAAGAC	2 cut(s)	76, 531
BstX2I	RGATCY	2 cut(s)	232, 586
BstYI	RGATCY	2 cut(s)	232, 586
BstZ17I	GTATAC	1 cut(s)	268
BstZI	CGGCCG	1 cut(s)	498
Bsu15I	ATCGAT	1 cut(s)	677
BsuRI	GGCC	3 cut(s)	500, 580, 634
BsuTUI	ATCGAT	1 cut(s)	677
BtgZI	GCGATG	1 cut(s)	617
BtsCI	GGATG	3 cut(s)	136, 454, 603
Cac8I	GCNNGC	2 cut(s)	97, 369
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	2 cut(s)	496, 500
Cfr13I	GGNCC	1 cut(s)	439
ClaI	ATCGAT	1 cut(s)	677
CseI	GACGC	1 cut(s)	259
CviAII	CATG	2 cut(s)	49, 274
CviJI	RGCY	7 cut(s)	228, 261, 284, 445, 500, 580, 634
CviKI_1	RGCY	7 cut(s)	228, 261, 284, 445, 500, 580, 634
DpnI	GATC	5 cut(s)	47, 234, 479, 588, 666
DpnII	GATC	5 cut(s)	45, 232, 477, 586, 664
EaeI	YGGCCR	2 cut(s)	498, 632
EagI	CGGCCG	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
EciI	GGCGGA	1 cut(s)	104
EclXI	CGGCCG	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	439
Eco52I	CGGCCG	1 cut(s)	498
EcoT22I	ATGCAT	1 cut(s)	389
FaeI	CATG	2 cut(s)	52, 277
FaiI	YATR	9 cut(s)	50, 268, 275, 378, 380, 389, 645, 698, 700
FatI	CATG	2 cut(s)	48, 273
FauI	CCCGC	3 cut(s)	28, 149, 300
FbaI	TGATCA	1 cut(s)	477
FblI	GTMKAC	2 cut(s)	163, 267
Fnu4HI	GCNGC	5 cut(s)	145, 148, 282, 296, 635
FokI	GGATG	3 cut(s)	123, 461, 610
Fsp4HI	GCNGC	5 cut(s)	145, 148, 282, 296, 635
FspBI	CTAG	3 cut(s)	258, 299, 590
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	5 cut(s)	145, 148, 282, 296, 635
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	3 cut(s)	500, 580, 634
HapII	CCGG	5 cut(s)	157, 442, 467, 497, 501
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	52, 277
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	164
HindII	GTYRAC	1 cut(s)	164
HinfI	GANTC	3 cut(s)	160, 165, 241
HpaII	CCGG	5 cut(s)	157, 442, 467, 497, 501
HphI	GGTGA	3 cut(s)	496, 533, 559
Hpy166II	GTNNAC	2 cut(s)	164, 268
Hpy188I	TCNGA	3 cut(s)	222, 462, 669
Hpy188III	TCNNGA	6 cut(s)	177, 238, 247, 287, 507, 660
Hpy8I	GTNNAC	2 cut(s)	164, 268
Hpy99I	CGWCG	4 cut(s)	83, 92, 95, 156
HpyAV	CCTTC	4 cut(s)	121, 217, 512, 552
HpyCH4III	ACNGT	3 cut(s)	107, 362, 484
HpyCH4IV	ACGT	2 cut(s)	213, 340
HpyCH4V	TGCA	1 cut(s)	387
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 129, 153
HpySE526I	ACGT	2 cut(s)	213, 340
Hsp92II	CATG	2 cut(s)	52, 277
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	5 cut(s)	45, 232, 477, 586, 664
LmnI	GCTCC	3 cut(s)	62, 463, 693
Lsp1109I	GCAGC	2 cut(s)	282, 293
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	3 cut(s)	258, 299, 590
MaeII	ACGT	2 cut(s)	213, 340
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	5 cut(s)	47, 234, 479, 588, 666
MbiI	CCGCTC	1 cut(s)	458
MboI	GATC	5 cut(s)	45, 232, 477, 586, 664
MboII	GAAGA	5 cut(s)	76, 163, 503, 536, 694
MflI	RGATCY	2 cut(s)	232, 586
MluCI	AATT	1 cut(s)	415
MluI	ACGCGT	1 cut(s)	369
MlyI	GAGTC	2 cut(s)	159, 169
Mph1103I	ATGCAT	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	5 cut(s)	157, 442, 467, 497, 501
Mva1269I	GAATGC	1 cut(s)	389
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	3 cut(s)	29, 129, 153
NdeII	GATC	5 cut(s)	45, 232, 477, 586, 664
NlaIII	CATG	2 cut(s)	52, 277
NlaIV	GGNNCC	1 cut(s)	401
NsiI	ATGCAT	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 87, 160
PctI	GAATGC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	5 cut(s)	146, 149, 283, 297, 636
PleI	GAGTC	2 cut(s)	159, 168
PpsI	GAGTC	2 cut(s)	159, 168
PspN4I	GGNNCC	1 cut(s)	401
PspPI	GGNCC	1 cut(s)	439
PsuI	RGATCY	2 cut(s)	232, 586
SalI	GTCGAC	1 cut(s)	162
SatI	GCNGC	5 cut(s)	145, 148, 282, 296, 635
Sau3AI	GATC	5 cut(s)	45, 232, 477, 586, 664
Sau96I	GGNCC	1 cut(s)	439
SchI	GAGTC	2 cut(s)	159, 169
SetI	ASST	7 cut(s)	216, 259, 263, 286, 343, 523, 554
SfaNI	GCATC	1 cut(s)	453
SinI	GGWCC	1 cut(s)	439
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	1 cut(s)	415
SspMI	CTAG	3 cut(s)	258, 299, 590
TaaI	ACNGT	3 cut(s)	107, 362, 484
TaiI	ACGT	2 cut(s)	216, 343
TaqI	TCGA	6 cut(s)	163, 178, 239, 327, 413, 677
TasI	AATT	1 cut(s)	415
TauI	GCSGC	3 cut(s)	147, 150, 637
TfiI	GAWTC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	281, 295
TspDTI	ATGAA	2 cut(s)	365, 695
TspGWI	ACGGA	2 cut(s)	49, 348
VpaK11BI	GGWCC	1 cut(s)	439
XmiI	GTMKAC	2 cut(s)	163, 267
XspI	CTAG	3 cut(s)	258, 299, 590
Zsp2I	ATGCAT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.