Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015918

Physical Location & Seq

Genomic Coordinates Forward (+)

22155178 .. 22158557

Gene Structure 3380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G263800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGACATCACCAACAAATACAATCACCAAAACCACGAACCCACCAACTATGCTGTCAACGGTAAGATTATGCTCTGCTCAGTCATCATTCTCTTCATCGTCATCTTCACCATCGCTTGCTTCCACAGCTACGTCCGCTGCTTCTTCCACCGCCACCACCCACGCCGTACTCGCCGCACACCACGCTATCTCTTCCCCCACCCTGTTATTTCTTTCACCACCCTCCTCGAAACTACCCTCTCTCCGACCAATCCCAAGGCCTTGGATCCCGCTGTTCTCAAGACCCTCCCTACTTTTACTTACTCGGCCACCACCCGCATCAACGCAGCACCACTAGAGTGCGCCGTGTGTTTATCTGAGTTCGAAGACGAAGAGCAAGGCCGTGTATTGCCCACGTGTTACCACACCTTCCATTTAGAGTGCATAGACACTTGGTTCCGGTCTCAGTCCAATTGTCCACTCTGCAGGGCTCCGGTTCAACCCGATATTCCGCTTCCTAGGCTGGAAAATTCGCCTGAAACGGCAATAACAGTGAATGAACCGGGCGGTTCGGAGCATGACACGGCTGAAGCTAAAGTGGGTTGCTCGAGATGTTCGCCGTCGACGAGTGGTTCGGCGGAGGAATATGGGAGAAAGCCAATAATGGAGGTGGTAGAAAAACCAAAAAATGCTACTAACCAAACTGTCATTAGGAGCTTAGATATGCAAAGAGAAAGGCCACGAAAGTCAAGGCACAAACGGCGGCAGCAAAGCAGGCGTGGTGAATATGAACCTCATTCAACAAGCATGCCAGCATGCTCCTCACAAGGACCTCTGCATCGACATCCTGAAGAACGACCCCAACAGCAAAGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005798 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030100 GO:0030163 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0032879 GO:0033554 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0047484 GO:0048364 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051301 GO:0051603 GO:0051716 GO:0060627 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071214 GO:0071470 GO:0071704 GO:0071944 GO:0080134 GO:0097708 GO:0099402 GO:0104004 GO:0140096 GO:1901000 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

286

Amino Acids

32.58

Weight (kDa)

8.83

Isoelectric Point (pI)

62.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47560 AT3G62690
fragaria_vesca	FvH4_2g25940
malus_domestica	MD11G1307700.v1.1
prunus_persica	Prupe.8G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0294261
rosa_laevigata	RLG00000011883
rosa_multiflora	Rmu_co8478183.1_g000001 Rmu_sc0003996.1_g000004
rosa_rugosa	Rorug06G0243000
rosa_samantha	Rh6AG355500 Rh6BG362200 Rh6CG369500 Rh6DG356200
rosa_wichuraiana	Rw6G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	602
AciI	CCGC	9 cut(s)	136, 151, 175, 270, 316, 491, 546, 617, 742
AclWI	GGATC	2 cut(s)	260, 273
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	508
AcuI	CTGAAG	2 cut(s)	588, 849
AcvI	CACGTG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	395
AgsI	TTSAA	2 cut(s)	479, 780
AleI	CACNNNNGTG	1 cut(s)	337
AluBI	AGCT	4 cut(s)	129, 572, 696, 855
AluI	AGCT	4 cut(s)	129, 572, 696, 855
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	2 cut(s)	260, 273
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	4 cut(s)	258, 306, 379, 716
ApeKI	GCWGC	3 cut(s)	138, 326, 745
ApoI	RAATTY	1 cut(s)	508
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
AspA2I	CCTAGG	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	809
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	4 cut(s)	17, 100, 208, 773
AsuII	TTCGAA	1 cut(s)	363
AvaI	CYCGRG	1 cut(s)	586
AvaII	GGWCC	1 cut(s)	809
AvrII	CCTAGG	1 cut(s)	497
BamHI	GGATCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	472
BbrPI	CACGTG	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	125, 338, 757
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	7 cut(s)	150, 329, 366, 537, 579, 583, 755
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	2 cut(s)	335, 498
BfmI	CTRYAG	1 cut(s)	463
BisI	GCNGC	5 cut(s)	139, 175, 327, 743, 746
BlnI	CCTAGG	1 cut(s)	497
BlsI	GCNGC	5 cut(s)	140, 176, 328, 744, 747
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	1 cut(s)	809
BmeT110I	CYCGRG	1 cut(s)	586
BmgT120I	GGNCC	1 cut(s)	809
BmiI	GGNNCC	3 cut(s)	267, 437, 471
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	2 cut(s)	327, 826
BpiI	GAAGAC	1 cut(s)	372
Bpu14I	TTCGAA	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	543
BsaAI	YACGTR	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	447
BsaJI	CCNNGG	3 cut(s)	255, 261, 497
BsaWI	WCCGGW	2 cut(s)	438, 472
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
BseDI	CCNNGG	3 cut(s)	255, 261, 497
BseGI	GGATG	1 cut(s)	823
BseMII	CTCAG	3 cut(s)	93, 348, 458
BseRI	GAGGAG	2 cut(s)	215, 790
BseXI	GCAGC	3 cut(s)	125, 338, 757
BshFI	GGCC	4 cut(s)	260, 308, 381, 718
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	3 cut(s)	439, 473, 542
BsmAI	GTCTC	1 cut(s)	447
BsnI	GGCC	4 cut(s)	260, 308, 381, 718
Bso31I	GGTCTC	1 cut(s)	447
BsoBI	CYCGRG	1 cut(s)	586
Bsp119I	TTCGAA	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	9 cut(s)	136, 151, 175, 270, 316, 491, 546, 617, 742
BspANI	GGCC	4 cut(s)	260, 308, 381, 718
BspCNI	CTCAG	3 cut(s)	92, 349, 457
BspLI	GGNNCC	3 cut(s)	267, 437, 471
BspMAI	CTGCAG	1 cut(s)	467
BspPI	GGATC	2 cut(s)	260, 273
BspQI	GCTCTTC	1 cut(s)	366
BspT104I	TTCGAA	1 cut(s)	363
BspTNI	GGTCTC	1 cut(s)	447
BssECI	CCNNGG	3 cut(s)	255, 261, 497
BssMI	GATC	1 cut(s)	265
BssT1I	CCWWGG	3 cut(s)	255, 261, 497
Bst4CI	ACNGT	3 cut(s)	62, 532, 685
Bst6I	CTCTTC	3 cut(s)	98, 197, 366
BstBAI	YACGTR	1 cut(s)	396
BstBI	TTCGAA	1 cut(s)	363
BstC8I	GCNNGC	5 cut(s)	118, 755, 788, 792, 796
BstDEI	CTNAG	4 cut(s)	79, 357, 444, 697
BstF5I	GGATG	1 cut(s)	823
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	7 cut(s)	126, 135, 171, 183, 499, 739, 754
BstNSI	RCATGY	2 cut(s)	790, 798
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	3 cut(s)	125, 338, 757
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	265
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	4 cut(s)	260, 308, 381, 718
BtgZI	GCGATG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	823
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	5 cut(s)	118, 755, 788, 792, 796
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	809
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	3 cut(s)	557, 787, 795
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	4 cut(s)	79, 357, 444, 697
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	3 cut(s)	98, 197, 366
EarI	CTCTTC	3 cut(s)	98, 197, 366
EciI	GGCGGA	1 cut(s)	632
Eco130I	CCWWGG	3 cut(s)	255, 261, 497
Eco147I	AGGCCT	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	472
Eco31I	GGTCTC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	809
Eco57I	CTGAAG	2 cut(s)	588, 849
Eco72I	CACGTG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	586
EcoO109I	RGGNCCY	1 cut(s)	809
EcoT14I	CCWWGG	3 cut(s)	255, 261, 497
EcoT38I	GRGCYC	1 cut(s)	472
ErhI	CCWWGG	3 cut(s)	255, 261, 497
FaeI	CATG	3 cut(s)	560, 790, 798
FaiI	YATR	9 cut(s)	51, 71, 425, 558, 627, 704, 768, 788, 796
FatI	CATG	3 cut(s)	556, 786, 794
FauI	CCCGC	2 cut(s)	277, 323
FblI	GTMKAC	1 cut(s)	602
Fnu4HI	GCNGC	5 cut(s)	139, 175, 327, 743, 746
FokI	GGATG	1 cut(s)	810
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	5 cut(s)	139, 175, 327, 743, 746
FspBI	CTAG	2 cut(s)	335, 498
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	5 cut(s)	139, 175, 327, 743, 746
HaeIII	GGCC	4 cut(s)	260, 308, 381, 718
HapII	CCGG	3 cut(s)	439, 473, 542
HhaI	GCGC	1 cut(s)	344
Hin1II	CATG	3 cut(s)	560, 790, 798
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	2 cut(s)	58, 603
HindII	GTYRAC	2 cut(s)	58, 603
HpaII	CCGG	3 cut(s)	439, 473, 542
HphI	GGTGA	4 cut(s)	17, 100, 208, 773
Hpy166II	GTNNAC	3 cut(s)	58, 458, 603
Hpy188I	TCNGA	3 cut(s)	246, 358, 553
Hpy188III	TCNNGA	3 cut(s)	280, 588, 827
Hpy8I	GTNNAC	3 cut(s)	58, 458, 603
Hpy99I	CGWCG	2 cut(s)	604, 607
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	3 cut(s)	62, 532, 685
HpyCH4IV	ACGT	2 cut(s)	132, 395
HpyCH4V	TGCA	4 cut(s)	423, 465, 706, 817
HpyF10VI	GCNNNNNNNGC	7 cut(s)	126, 135, 171, 183, 499, 739, 754
HpyF3I	CTNAG	4 cut(s)	79, 357, 444, 697
HpySE526I	ACGT	2 cut(s)	132, 395
Hsp92II	CATG	3 cut(s)	560, 790, 798
HspAI	GCGC	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	265
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	5 cut(s)	475, 553, 693, 803, 852
Lsp1109I	GCAGC	3 cut(s)	125, 338, 757
LweI	GCATC	2 cut(s)	327, 826
MaeI	CTAG	2 cut(s)	335, 498
MaeII	ACGT	2 cut(s)	132, 395
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	7 cut(s)	85, 97, 136, 184, 377, 383, 842
MfeI	CAATTG	1 cut(s)	451
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	2 cut(s)	451, 508
MmeI	TCCRAC	1 cut(s)	269
MnlI	CCTC	9 cut(s)	233, 236, 248, 296, 613, 640, 783, 811, 822
MslI	CAYNNNNRTG	1 cut(s)	337
MspA1I	CMGCKG	2 cut(s)	138, 272
MspI	CCGG	3 cut(s)	439, 473, 542
MspR9I	CCNGG	1 cut(s)	543
MunI	CAATTG	1 cut(s)	451
MwoI	GCNNNNNNNGC	7 cut(s)	126, 135, 171, 183, 499, 739, 754
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	3 cut(s)	560, 790, 798
NlaIV	GGNNCC	3 cut(s)	267, 437, 471
NmeAIII	GCCGAG	1 cut(s)	284
NspI	RCATGY	2 cut(s)	790, 798
NspV	TTCGAA	1 cut(s)	363
OliI	CACNNNNGTG	1 cut(s)	337
PaeI	GCATGC	2 cut(s)	790, 798
PaeR7I	CTCGAG	1 cut(s)	586
PceI	AGGCCT	1 cut(s)	260
PciSI	GCTCTTC	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	602
PkrI	GCNGC	5 cut(s)	140, 176, 328, 744, 747
PmaCI	CACGTG	1 cut(s)	396
PmlI	CACGTG	1 cut(s)	396
Ppu21I	YACGTR	1 cut(s)	396
PpuMI	RGGWCCY	1 cut(s)	809
Psp5II	RGGWCCY	1 cut(s)	809
PspCI	CACGTG	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	267, 437, 471
PspPI	GGNCC	1 cut(s)	809
PspPPI	RGGWCCY	1 cut(s)	809
PstI	CTGCAG	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	337
SalI	GTCGAC	1 cut(s)	601
SapI	GCTCTTC	1 cut(s)	366
SatI	GCNGC	5 cut(s)	139, 175, 327, 743, 746
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	809
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	2 cut(s)	327, 826
SfcI	CTRYAG	1 cut(s)	463
Sfr274I	CTCGAG	1 cut(s)	586
SfuI	TTCGAA	1 cut(s)	363
SgrDI	CGTCGACG	1 cut(s)	601
SinI	GGWCC	1 cut(s)	809
SlaI	CTCGAG	1 cut(s)	586
SmiMI	CAYNNNNRTG	1 cut(s)	337
SmlI	CTYRAG	2 cut(s)	278, 586
SmoI	CTYRAG	2 cut(s)	278, 586
SphI	GCATGC	2 cut(s)	790, 798
Sse9I	AATT	2 cut(s)	451, 508
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	9 cut(s)	136, 151, 175, 270, 316, 491, 546, 617, 742
SspMI	CTAG	2 cut(s)	335, 498
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	3 cut(s)	255, 261, 497
TaaI	ACNGT	3 cut(s)	62, 532, 685
TaiI	ACGT	2 cut(s)	135, 398
TaqI	TCGA	5 cut(s)	228, 363, 587, 602, 820
TasI	AATT	2 cut(s)	451, 508
TauI	GCSGC	2 cut(s)	177, 745
TscAI	CASTG	1 cut(s)	537
TseI	GCWGC	3 cut(s)	138, 326, 745
TspDTI	ATGAA	3 cut(s)	85, 552, 783
TspRI	CASTG	1 cut(s)	537
VpaK11BI	GGWCC	1 cut(s)	809
XapI	RAATTY	1 cut(s)	508
XceI	RCATGY	2 cut(s)	790, 798
XhoI	CTCGAG	1 cut(s)	586
XmaJI	CCTAGG	1 cut(s)	497
XmiI	GTMKAC	1 cut(s)	602
XspI	CTAG	2 cut(s)	335, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.