AT2G47670

Invertase pectin methylesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014556
Physical Location & Seq
Reverse (-)
19543921 .. 19544910
990 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47670.1

Sequence Viewer

Length: 627 bp
ATGACTTCGTCTTCTTCTTCTCCTATCACGTTTACTCTTCTTCTGCTTCTCTCTCTTCTTGTGGCACTAAACCCAAATCCGTCGTTAGCCTCCACCGGTAGCAACATCAACACAAACGACATCGTGACGCAGTACAGCACATACGTTAGAAACGCGTGCAACGTAACGCGATACAACCGCCTCTGCGTCCGAACGCTATGGCCGTTTGCAATCGTCGCTCGAAACAACACCAGCAAGTGGGCTCGAGCTAGCGTCGCGGTTACCATAACCGACACCAAACGGGTGCTGAGGCTCTTGCTCAAAACGCAGCGTTCAGCAGTTGGCGAAAGCGAGCGAATCGCGTTGTCGGATTGCCGAGAGCTCTTCGTGGACTCTCTCGACAACCTATACAAGTCGCTCGCCGTTCTGCGGACACTGAACGCGGATGAGTTCCAGCGGCAGATAAGCGATCTCGCCACGTGGCTAAGCGCAGCACTCACGGATGATGACACGTGTCTAGATGGATTTGAAGAGACGTCGAGTAGAACACGGACGGTCAGGATGGTCCGGAGGAAGGCCACCAAGTGTATGCGACTATGCAGCAATGCTCTGGCTCTCCTCAAGAAGCTTGCTTTTGATGGCTTGTAA

Protein Analysis

208

Amino Acids

23.18

Weight (kDa)

9.56

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 48 - 199 1.5e-32 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47670 AT3G62820
fragaria_vesca FvH4_2g25710
malus_domestica MD03G1288100.v1.1 MD11G1310200.v1.1
prunus_persica Prupe.8G261300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0293991
rosa_laevigata RLG00000011909
rosa_multiflora Rmu_sc0005126.1_g000006 Rmu_sc0005647.1_g000002
rosa_roxburghii Rroxscaffold_7G00173760
rosa_rugosa Rorug06G0239900
rosa_samantha Rh6AG352900 Rh6BG359900 Rh6CG367200 Rh6DG353600
rosa_wichuraiana Rw6G030750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 518
AccB7I CCANNNNNTGG 1 cut(s) 237
AccII CGCG 5 cut(s) 155, 169, 257, 341, 422
AccIII TCCGGA 1 cut(s) 546
AciI CCGC 5 cut(s) 178, 257, 409, 422, 436
AcoI YGGCCR 1 cut(s) 200
AcvI CACGTG 2 cut(s) 459, 492
AcyI GRCGYC 1 cut(s) 515
AdeI CACNNNGTG 1 cut(s) 564
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 3 cut(s) 237, 408, 553
AflIII ACRYGT 3 cut(s) 153, 489, 491
AgeI ACCGGT 1 cut(s) 95
AgsI TTSAA 1 cut(s) 509
AluBI AGCT 3 cut(s) 248, 361, 607
AluI AGCT 3 cut(s) 248, 361, 607
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 243
Aor13HI TCCGGA 1 cut(s) 546
AoxI GGCC 2 cut(s) 200, 555
ApeKI GCWGC 3 cut(s) 307, 470, 579
AsiGI ACCGGT 1 cut(s) 95
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 1 cut(s) 544
AsuNHI GCTAGC 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 243
AvaII GGWCC 1 cut(s) 544
BanII GRGCYC 2 cut(s) 244, 363
BbrPI CACGTG 2 cut(s) 459, 492
BbsI GAAGAC 1 cut(s) 3
Bbv12I GWGCWC 1 cut(s) 363
BbvCI CCTCAGC 1 cut(s) 287
BbvI GCAGC 3 cut(s) 319, 482, 591
BccI CCATC 3 cut(s) 494, 535, 611
BceAI ACGGC 2 cut(s) 187, 386
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 2 cut(s) 249, 497
BisI GCNGC 4 cut(s) 308, 437, 471, 580
BlpI GCTNAGC 1 cut(s) 464
BlsI GCNGC 4 cut(s) 309, 438, 472, 581
Bme18I GGWCC 1 cut(s) 544
BmeT110I CYCGRG 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 544
BmtI GCTAGC 1 cut(s) 252
BoxI GACNNNNGTC 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 3
Bpu10I CCTNAGC 1 cut(s) 287
Bpu1102I GCTNAGC 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 584
BsaAI YACGTR 2 cut(s) 459, 492
BsaHI GRCGYC 1 cut(s) 515
BsaWI WCCGGW 2 cut(s) 95, 546
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 408, 553
Bse118I RCCGGY 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 589
BseAI TCCGGA 1 cut(s) 546
BseGI GGATG 3 cut(s) 430, 487, 546
BseLI CCNNNNNNNGG 3 cut(s) 237, 408, 553
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 1 cut(s) 278
BseRI GAGGAG 1 cut(s) 587
BseXI GCAGC 3 cut(s) 319, 482, 591
Bsh1236I CGCG 5 cut(s) 155, 169, 257, 341, 422
BshFI GGCC 2 cut(s) 202, 557
BshTI ACCGGT 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 243
BsiSI CCGG 2 cut(s) 96, 547
BslI CCNNNNNNNGG 3 cut(s) 237, 408, 553
BsmAI GTCTC 1 cut(s) 506
BsmBI CGTCTC 1 cut(s) 506
BsnI GGCC 2 cut(s) 202, 557
BsoBI CYCGRG 1 cut(s) 243
Bsp1286I GDGCHC 2 cut(s) 244, 363
Bsp13I TCCGGA 1 cut(s) 546
Bsp143I GATC 1 cut(s) 448
Bsp1720I GCTNAGC 1 cut(s) 464
BspACI CCGC 5 cut(s) 178, 257, 409, 422, 436
BspANI GGCC 2 cut(s) 202, 557
BspCNI CTCAG 1 cut(s) 279
BspEI TCCGGA 1 cut(s) 546
BspFNI CGCG 5 cut(s) 155, 169, 257, 341, 422
BspOI GCTAGC 1 cut(s) 252
BspQI GCTCTTC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 589
BsrFI RCCGGY 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 95
BssMI GATC 1 cut(s) 448
BssNI GRCGYC 1 cut(s) 515
Bst4CI ACNGT 1 cut(s) 535
Bst6I CTCTTC 4 cut(s) 42, 60, 368, 504
BstACI GRCGYC 1 cut(s) 515
BstBAI YACGTR 2 cut(s) 459, 492
BstC8I GCNNGC 5 cut(s) 157, 250, 332, 399, 609
BstDEI CTNAG 2 cut(s) 287, 464
BstEII GGTNACC 1 cut(s) 259
BstF5I GGATG 3 cut(s) 430, 487, 546
BstFNI CGCG 5 cut(s) 155, 169, 257, 341, 422
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 3 cut(s) 215, 254, 304
BstPAI GACNNNNGTC 1 cut(s) 492
BstPI GGTNACC 1 cut(s) 259
BstUI CGCG 5 cut(s) 155, 169, 257, 341, 422
BstV1I GCAGC 3 cut(s) 319, 482, 591
BstV2I GAAGAC 1 cut(s) 3
BsuRI GGCC 2 cut(s) 202, 557
BtsCI GGATG 3 cut(s) 430, 487, 546
BtsIMutI CAGTG 1 cut(s) 413
Cac8I GCNNGC 5 cut(s) 157, 250, 332, 399, 609
CfoI GCGC 1 cut(s) 470
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 544
CseI GACGC 3 cut(s) 136, 175, 241
Csp6I GTAC 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 95
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 287, 464
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
DraIII CACNNNGTG 1 cut(s) 564
EaeI YGGCCR 1 cut(s) 200
Eam1104I CTCTTC 4 cut(s) 42, 60, 368, 504
EarI CTCTTC 4 cut(s) 42, 60, 368, 504
Ecl136II GAGCTC 1 cut(s) 361
Eco24I GRGCYC 2 cut(s) 244, 363
Eco47I GGWCC 1 cut(s) 544
Eco53kI GAGCTC 1 cut(s) 361
Eco72I CACGTG 2 cut(s) 459, 492
Eco88I CYCGRG 1 cut(s) 243
Eco91I GGTNACC 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 361
EcoO65I GGTNACC 1 cut(s) 259
EcoT38I GRGCYC 2 cut(s) 244, 363
Esp3I CGTCTC 1 cut(s) 506
FaiI YATR 6 cut(s) 142, 199, 266, 388, 569, 577
Fnu4HI GCNGC 4 cut(s) 308, 437, 471, 580
FokI GGATG 3 cut(s) 437, 494, 553
FriOI GRGCYC 2 cut(s) 244, 363
Fsp4HI GCNGC 4 cut(s) 308, 437, 471, 580
FspBI CTAG 2 cut(s) 249, 497
GlaI GCGC 1 cut(s) 469
GluI GCNGC 4 cut(s) 308, 437, 471, 580
HaeIII GGCC 2 cut(s) 202, 557
HapII CCGG 2 cut(s) 96, 547
HgaI GACGC 3 cut(s) 136, 175, 241
HhaI GCGC 1 cut(s) 470
Hin1I GRCGYC 1 cut(s) 515
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 2 cut(s) 336, 371
HpaII CCGG 2 cut(s) 96, 547
Hpy166II GTNNAC 2 cut(s) 33, 370
Hpy188I TCNGA 2 cut(s) 191, 349
Hpy188III TCNNGA 6 cut(s) 124, 377, 497, 538, 547, 601
Hpy8I GTNNAC 2 cut(s) 33, 370
Hpy99I CGWCG 4 cut(s) 85, 218, 257, 520
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4IV ACGT 6 cut(s) 29, 144, 162, 458, 491, 515
HpyCH4V TGCA 3 cut(s) 159, 209, 579
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 254, 304
HpyF3I CTNAG 2 cut(s) 287, 464
HpySE526I ACGT 6 cut(s) 29, 144, 162, 458, 491, 515
Hsp92I GRCGYC 1 cut(s) 515
HspAI GCGC 1 cut(s) 468
Kpn2I TCCGGA 1 cut(s) 546
Kzo9I GATC 1 cut(s) 448
LguI GCTCTTC 1 cut(s) 368
LpnPI CCDG 6 cut(s) 109, 244, 446, 523, 560, 575
Lsp1109I GCAGC 3 cut(s) 319, 482, 591
MaeI CTAG 2 cut(s) 249, 497
MaeII ACGT 6 cut(s) 29, 144, 162, 458, 491, 515
MaeIII GTNAC 3 cut(s) 124, 163, 259
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 8 cut(s) 3, 6, 9, 29, 32, 47, 355, 521
MhlI GDGCHC 2 cut(s) 244, 363
MluI ACGCGT 1 cut(s) 153
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 5 cut(s) 100, 191, 282, 543, 608
MroI TCCGGA 1 cut(s) 546
MspA1I CMGCKG 1 cut(s) 436
MspI CCGG 2 cut(s) 96, 547
MvnI CGCG 5 cut(s) 155, 169, 257, 341, 422
MwoI GCNNNNNNNGC 3 cut(s) 215, 254, 304
NdeII GATC 1 cut(s) 448
NheI GCTAGC 1 cut(s) 248
NmeAIII GCCGAG 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 124
PaeR7I CTCGAG 1 cut(s) 243
PciSI GCTCTTC 1 cut(s) 368
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 200
PfeI GAWTC 1 cut(s) 336
PflFI GACNNNGTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 237
PinAI ACCGGT 1 cut(s) 95
PkrI GCNGC 4 cut(s) 309, 438, 472, 581
PleI GAGTC 1 cut(s) 365
PmaCI CACGTG 2 cut(s) 459, 492
PmlI CACGTG 2 cut(s) 459, 492
PpsI GAGTC 1 cut(s) 365
Ppu21I YACGTR 2 cut(s) 459, 492
PshAI GACNNNNGTC 1 cut(s) 492
Psp124BI GAGCTC 1 cut(s) 363
PspCI CACGTG 2 cut(s) 459, 492
PspEI GGTNACC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 544
PspXI VCTCGAGB 1 cut(s) 243
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SacI GAGCTC 1 cut(s) 363
SapI GCTCTTC 1 cut(s) 368
SatI GCNGC 4 cut(s) 308, 437, 471, 580
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 1 cut(s) 365
SduI GDGCHC 2 cut(s) 244, 363
Sfr274I CTCGAG 1 cut(s) 243
SinI GGWCC 1 cut(s) 544
SlaI CTCGAG 1 cut(s) 243
SmlI CTYRAG 2 cut(s) 243, 599
SmoI CTYRAG 2 cut(s) 243, 599
SsiI CCGC 5 cut(s) 178, 257, 409, 422, 436
SspMI CTAG 2 cut(s) 249, 497
SstI GAGCTC 1 cut(s) 363
TaaI ACNGT 1 cut(s) 535
TaiI ACGT 6 cut(s) 32, 147, 165, 461, 494, 518
TaqI TCGA 4 cut(s) 220, 244, 378, 518
TatI WGTACW 1 cut(s) 132
TauI GCSGC 1 cut(s) 439
TfiI GAWTC 1 cut(s) 336
TscAI CASTG 1 cut(s) 420
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 3 cut(s) 307, 470, 579
Tsp45I GTSAC 1 cut(s) 124
TspGWI ACGGA 3 cut(s) 69, 494, 544
TspRI CASTG 1 cut(s) 420
Tth111I GACNNNGTC 1 cut(s) 7
Van91I CCANNNNNTGG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 544
XbaI TCTAGA 1 cut(s) 496
XhoI CTCGAG 1 cut(s) 243
XspI CTAG 2 cut(s) 249, 497
ZraI GACGTC 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.