Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0014556

Physical Location & Seq

Genomic Coordinates Forward (+)

36683963 .. 36685045

Gene Structure 1083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1288100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAAAATGGCATCTTGTACCAATTACGTCTTCGTGTCACTCATTTTTCCTGTTATGTGGCTGAGTTTCTCAACTCAATTGGTATCTGGAAAAGGGAACAAAAACTATGTTCAAGAGGCCTGCAGTGTGACCAGGTATCGAGACCTTTGCATCCACTCACTGGCATCGTTTTCGACATTGGCCAAGGACAGCCCTAGCAGGTGGGCACGAGCCGGGGTTTCAGTTTCATTGAGCGAGACCAAGAGTGCTGCTCATTACTTGGTAACTCTGAAAAAGCACAGGCGTGGTATGCAAGGGATAAACAAAGTTGCTTTGTCCGACTGCATTGAGTGCTTTCTGAACGCGATCGATGAGCTTCACAAATCACTCGGTGTTCTCAGGACGCTTACTAAAACGACATTCGGCTCGGAAATGGCGGACCTGAAAACCTGGCTCAGTGCTGCCCTAACTGATGGAGACACCTGCTTGGATGGCTTTGAGGGTCACAAAGGAAAACAAGTCAAATTGCTACAAAATAGGGTTTCGAAAGTTACGCATATCACCAATAATGCACTGGCTCTTGTTAACAAACTTGCGACTACTGGCTTGGGAAGCCTTCCTAATTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0004857 GO:0007275 GO:0008150 GO:0009791 GO:0010154 GO:0010214 GO:0022414 GO:0030234 GO:0032501 GO:0032502 GO:0043086 GO:0044092 GO:0046910 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050790 GO:0061458 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

203

Amino Acids

22.05

Weight (kDa)

9.46

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	35 - 187	2.6e-36	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47670 AT3G62820
fragaria_vesca	FvH4_2g25710
malus_domestica	MD03G1288100.v1.1 MD11G1310200.v1.1
prunus_persica	Prupe.8G261300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293991
rosa_laevigata	RLG00000011909
rosa_multiflora	Rmu_sc0005126.1_g000006 Rmu_sc0005647.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173760
rosa_rugosa	Rorug06G0239900
rosa_samantha	Rh6AG352900 Rh6BG359900 Rh6CG367200 Rh6DG353600
rosa_wichuraiana	Rw6G030750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	189, 470
Acc36I	ACCTGC	2 cut(s)	189, 470
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccII	CGCG	1 cut(s)	344
AciI	CCGC	1 cut(s)	416
AcoI	YGGCCR	1 cut(s)	180
AdeI	CACNNNGTG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	2 cut(s)	131, 428
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AleI	CACNNNNGTG	1 cut(s)	282
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw26I	GTCTC	3 cut(s)	135, 230, 450
AoxI	GGCC	2 cut(s)	117, 180
ApeKI	GCWGC	2 cut(s)	248, 440
AspS9I	GGNCC	1 cut(s)	418
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	532
AsuII	TTCGAA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	418
BaeGI	GKGCMC	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	182
BauI	CACGAG	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	235, 427
BccI	CCATC	2 cut(s)	446, 464
BcgI	CGANNNNNNTGC	4 cut(s)	129, 153, 163, 187
BciT130I	CCWGG	2 cut(s)	133, 430
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	3 cut(s)	135, 230, 450
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	121
BfuAI	ACCTGC	2 cut(s)	189, 470
BisI	GCNGC	2 cut(s)	249, 441
BlsI	GCNGC	2 cut(s)	250, 442
Bme1390I	CCNGG	3 cut(s)	133, 214, 430
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmrFI	CCNGG	3 cut(s)	133, 214, 430
BmsI	GCATC	3 cut(s)	20, 159, 173
BpiI	GAAGAC	1 cut(s)	22
BplI	GAGNNNNNCTC	2 cut(s)	235, 267
Bpu14I	TTCGAA	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	214
Bsa29I	ATCGAT	1 cut(s)	348
BsaI	GGTCTC	2 cut(s)	135, 230
BsaJI	CCNNGG	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	3 cut(s)	165, 558, 586
BseBI	CCWGG	2 cut(s)	133, 430
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	183, 213
BseGI	GGATG	2 cut(s)	150, 475
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	3 cut(s)	53, 391, 448
BseNI	ACTGG	3 cut(s)	165, 558, 586
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	235, 427
Bsh1236I	CGCG	1 cut(s)	344
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	2 cut(s)	119, 182
BshVI	ATCGAT	1 cut(s)	348
BsiEI	CGRYCG	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	3 cut(s)	135, 230, 450
BsnI	GGCC	2 cut(s)	119, 182
Bso31I	GGTCTC	2 cut(s)	135, 230
Bsp119I	TTCGAA	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	345
BspACI	CCGC	1 cut(s)	416
BspANI	GGCC	2 cut(s)	119, 182
BspCNI	CTCAG	3 cut(s)	54, 390, 447
BspDI	ATCGAT	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	344
BspMAI	CTGCAG	1 cut(s)	125
BspMI	ACCTGC	2 cut(s)	189, 470
BspT104I	TTCGAA	1 cut(s)	524
BspTNI	GGTCTC	2 cut(s)	135, 230
BsrI	ACTGG	3 cut(s)	165, 558, 586
BssECI	CCNNGG	2 cut(s)	183, 213
BssMI	GATC	1 cut(s)	345
BssSI	CACGAG	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	133, 430
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstBI	TTCGAA	1 cut(s)	524
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	3 cut(s)	62, 377, 434
BstF5I	GGATG	2 cut(s)	150, 475
BstFNI	CGCG	1 cut(s)	344
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	3 cut(s)	135, 230, 450
BstMBI	GATC	1 cut(s)	345
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	4 cut(s)	289, 330, 471, 591
BstNI	CCWGG	2 cut(s)	133, 430
BstSCI	CCNGG	3 cut(s)	131, 212, 428
BstSFI	CTRYAG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	208
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	2 cut(s)	235, 427
BstV2I	GAAGAC	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	119, 182
BsuTUI	ATCGAT	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	150, 475
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	4 cut(s)	130, 158, 442, 551
BveI	ACCTGC	2 cut(s)	189, 470
Cac8I	GCNNGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	418
ClaI	ATCGAT	1 cut(s)	348
CseI	GACGC	1 cut(s)	391
CsiI	ACCWGGT	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	18
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	3 cut(s)	62, 377, 434
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
DraIII	CACNNNGTG	1 cut(s)	371
EaeI	YGGCCR	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	431
Eco130I	CCWWGG	1 cut(s)	183
Eco147I	AGGCCT	1 cut(s)	119
Eco31I	GGTCTC	2 cut(s)	135, 230
Eco47I	GGWCC	1 cut(s)	418
EcoRII	CCWGG	2 cut(s)	131, 428
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaiI	YATR	4 cut(s)	56, 108, 290, 537
Fnu4HI	GCNGC	2 cut(s)	249, 441
FokI	GGATG	2 cut(s)	137, 482
Fsp4HI	GCNGC	2 cut(s)	249, 441
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	2 cut(s)	249, 441
HaeIII	GGCC	2 cut(s)	119, 182
HapII	CCGG	1 cut(s)	213
HgaI	GACGC	1 cut(s)	391
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HpaI	GTTAAC	1 cut(s)	565
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188I	TCNGA	4 cut(s)	270, 319, 339, 409
Hpy188III	TCNNGA	4 cut(s)	87, 113, 140, 379
Hpy8I	GTNNAC	1 cut(s)	565
HpyAV	CCTTC	1 cut(s)	605
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	5 cut(s)	123, 150, 292, 324, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	289, 330, 471, 591
HpyF3I	CTNAG	3 cut(s)	62, 377, 434
HpySE526I	ACGT	1 cut(s)	27
KspAI	GTTAAC	1 cut(s)	565
Kzo9I	GATC	1 cut(s)	345
Lsp1109I	GCAGC	2 cut(s)	235, 427
LweI	GCATC	3 cut(s)	20, 159, 173
MabI	ACCWGGT	1 cut(s)	131
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	5 cut(s)	36, 127, 262, 482, 529
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	1 cut(s)	22
MfeI	CAATTG	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	208
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	4 cut(s)	22, 77, 503, 601
MluNI	TGGCCA	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	2 cut(s)	109, 472
Mox20I	TGGCCA	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	182
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	3 cut(s)	133, 214, 430
MunI	CAATTG	1 cut(s)	77
MvaI	CCWGG	2 cut(s)	133, 430
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	4 cut(s)	289, 330, 471, 591
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	1 cut(s)	345
NmuCI	GTSAC	3 cut(s)	36, 127, 482
NspV	TTCGAA	1 cut(s)	524
OliI	CACNNNNGTG	1 cut(s)	282
PaqCI	CACCTGC	2 cut(s)	189, 470
PceI	AGGCCT	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	250, 442
Ple19I	CGATCG	1 cut(s)	348
Psp6I	CCWGG	2 cut(s)	131, 428
PspGI	CCWGG	2 cut(s)	131, 428
PspPI	GGNCC	1 cut(s)	418
PstI	CTGCAG	1 cut(s)	125
PvuI	CGATCG	1 cut(s)	348
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	2 cut(s)	249, 441
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	1 cut(s)	418
ScrFI	CCNGG	3 cut(s)	133, 214, 430
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	8 cut(s)	30, 137, 147, 203, 357, 423, 431, 464
SexAI	ACCWGGT	1 cut(s)	131
SfaNI	GCATC	3 cut(s)	20, 159, 173
SfcI	CTRYAG	1 cut(s)	121
SfuI	TTCGAA	1 cut(s)	524
SinI	GGWCC	1 cut(s)	418
SmiMI	CAYNNNNRTG	1 cut(s)	282
Sse9I	AATT	4 cut(s)	22, 77, 503, 601
SseBI	AGGCCT	1 cut(s)	119
SsiI	CCGC	1 cut(s)	416
SspMI	CTAG	1 cut(s)	195
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	3 cut(s)	131, 212, 428
StyI	CCWWGG	1 cut(s)	183
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	4 cut(s)	139, 173, 348, 524
TasI	AATT	4 cut(s)	22, 77, 503, 601
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	4 cut(s)	130, 165, 442, 558
TseFI	GTSAC	3 cut(s)	36, 127, 482
TseI	GCWGC	2 cut(s)	248, 440
Tsp45I	GTSAC	3 cut(s)	36, 127, 482
TspDTI	ATGAA	2 cut(s)	17, 216
TspRI	CASTG	4 cut(s)	130, 165, 442, 558
Van91I	CCANNNNNTGG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.