Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014556

Physical Location & Seq

Genomic Coordinates Forward (+)

23229381 .. 23230575

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAAAACTCCCATGAGTTCTTCTATCACGTTTGCACTCGTCTTCTTTCTCCTTTCTCTCAACCCAACTTCATCATTACCGTCCAAACGCGAAAGCTACGTTCAAAACGCGTGTAGTGTTACACGCTACCAAGACCTCTGCGCTAAAACGCTATTGCCGTTTGCATCAGTCGCCAAGAACAGTCCCAGCAAATGGGCACGTGCCGGCGTTTCCGTTGCCATAACCGACAACAAAGACGTCCTTAGACACCTTCTCAAAACGAGGCTTTCAACGATTGGGAAACGAGACCGAATCGCTTTGTCGGATTGTCGCGAACTTCTCCAAGACTCTCTTGATAGTCTCCACAAGTCCTTGGCCGTCCTCCGGACACTCAGAGCCAGCGAGTTTCAGCAGCAGATGAGTGATCTTGCTACGTGGCTTAGCTCTTCCCTCACTGACAAGGACACGTGTCTTGATGGGTTTGAAAAGACATCGACGAGGTCATCATCAACGGTCAGGATGATTCGGAAGAGAGTCACGACGTCTATGTACTTGTCCAGCAATTCTCTCGCACTCCTCAACAAGCTAGCGGCTAATGGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0004857 GO:0007275 GO:0008150 GO:0009791 GO:0010154 GO:0010214 GO:0022414 GO:0030234 GO:0032501 GO:0032502 GO:0043086 GO:0044092 GO:0046910 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050790 GO:0061458 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

194

Amino Acids

21.46

Weight (kDa)

9.92

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	33 - 185	1.6e-31	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47670 AT3G62820
fragaria_vesca	FvH4_2g25710
malus_domestica	MD03G1288100.v1.1 MD11G1310200.v1.1
prunus_persica	Prupe.8G261300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293991
rosa_laevigata	RLG00000011909
rosa_multiflora	Rmu_sc0005126.1_g000006 Rmu_sc0005647.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173760
rosa_rugosa	Rorug06G0239900
rosa_samantha	Rh6AG352900 Rh6BG359900 Rh6CG367200 Rh6DG353600
rosa_wichuraiana	Rw6G030750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	240, 524
AccB7I	CCANNNNNTGG	1 cut(s)	192
AccII	CGCG	3 cut(s)	90, 110, 312
AccIII	TCCGGA	1 cut(s)	363
AciI	CCGC	1 cut(s)	569
AcoI	YGGCCR	1 cut(s)	354
AcvI	CACGTG	2 cut(s)	200, 447
AcyI	GRCGYC	2 cut(s)	237, 521
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	2 cut(s)	192, 363
AflIII	ACRYGT	3 cut(s)	108, 444, 446
AgsI	TTSAA	3 cut(s)	104, 270, 464
AluBI	AGCT	3 cut(s)	96, 423, 565
AluI	AGCT	3 cut(s)	96, 423, 565
Alw26I	GTCTC	2 cut(s)	279, 344
Aor13HI	TCCGGA	1 cut(s)	363
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	143
AsuNHI	GCTAGC	1 cut(s)	565
BaeGI	GKGCMC	1 cut(s)	199
BbrPI	CACGTG	2 cut(s)	200, 447
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	1 cut(s)	449
BceAI	ACGGC	2 cut(s)	142, 341
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BcoDI	GTCTC	2 cut(s)	279, 344
BfaI	CTAG	1 cut(s)	566
BisI	GCNGC	2 cut(s)	392, 570
BlpI	GCTNAGC	1 cut(s)	419
BlsI	GCNGC	2 cut(s)	393, 571
BmsI	GCATC	1 cut(s)	173
BmtI	GCTAGC	1 cut(s)	569
BoxI	GACNNNNGTC	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	419
BsaAI	YACGTR	3 cut(s)	200, 414, 447
BsaHI	GRCGYC	2 cut(s)	237, 521
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 363
Bse118I	RCCGGY	1 cut(s)	203
BseAI	TCCGGA	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	504
BseLI	CCNNNNNNNGG	2 cut(s)	192, 363
BseMII	CTCAG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	545
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	403
BseYI	CCCAGC	1 cut(s)	185
Bsh1236I	CGCG	3 cut(s)	90, 110, 312
BshFI	GGCC	1 cut(s)	356
BsiSI	CCGG	2 cut(s)	204, 364
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	192, 363
BsmAI	GTCTC	2 cut(s)	279, 344
BsmFI	GGGAC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	356
Bso31I	GGTCTC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp13I	TCCGGA	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	403
Bsp1720I	GCTNAGC	1 cut(s)	419
Bsp68I	TCGCGA	1 cut(s)	312
BspACI	CCGC	1 cut(s)	569
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	384
BspEI	TCCGGA	1 cut(s)	363
BspFNI	CGCG	3 cut(s)	90, 110, 312
BspOI	GCTAGC	1 cut(s)	569
BspQI	GCTCTTC	1 cut(s)	430
BspTNI	GGTCTC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	403
BssNI	GRCGYC	2 cut(s)	237, 521
BssT1I	CCWWGG	1 cut(s)	351
Bst4CI	ACNGT	3 cut(s)	81, 182, 493
Bst6I	CTCTTC	2 cut(s)	430, 503
BstACI	GRCGYC	2 cut(s)	237, 521
BstBAI	YACGTR	3 cut(s)	200, 414, 447
BstC8I	GCNNGC	3 cut(s)	205, 379, 567
BstDEI	CTNAG	3 cut(s)	242, 371, 419
BstF5I	GGATG	1 cut(s)	504
BstFNI	CGCG	3 cut(s)	90, 110, 312
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	1 cut(s)	406
BstMAI	GTCTC	2 cut(s)	279, 344
BstMBI	GATC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstPAI	GACNNNNGTC	1 cut(s)	447
BstSLI	GKGCMC	1 cut(s)	199
BstUI	CGCG	3 cut(s)	90, 110, 312
BstV1I	GCAGC	1 cut(s)	403
BstV2I	GAAGAC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	432
BtuMI	TCGCGA	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	205, 379, 567
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	8 cut(s)	96, 265, 356, 377, 418, 423, 565, 572
CviKI_1	RGCY	8 cut(s)	96, 265, 356, 377, 418, 423, 565, 572
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	3 cut(s)	242, 371, 419
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	2 cut(s)	430, 503
EarI	CTCTTC	2 cut(s)	430, 503
Eco130I	CCWWGG	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	279
Eco72I	CACGTG	2 cut(s)	200, 447
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	1 cut(s)	16
FaiI	YATR	3 cut(s)	14, 221, 527
FalI	AAGNNNNNCTT	4 cut(s)	225, 257, 315, 347
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	392, 570
FokI	GGATG	1 cut(s)	511
Fsp4HI	GCNGC	2 cut(s)	392, 570
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	2 cut(s)	392, 570
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	2 cut(s)	204, 364
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	2 cut(s)	237, 521
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HinfI	GANTC	4 cut(s)	291, 326, 502, 513
HpaII	CCGG	2 cut(s)	204, 364
Hpy188I	TCNGA	3 cut(s)	304, 374, 507
Hpy188III	TCNNGA	6 cut(s)	311, 332, 364, 452, 496, 517
Hpy99I	CGWCG	2 cut(s)	478, 523
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	3 cut(s)	81, 182, 493
HpyCH4IV	ACGT	7 cut(s)	29, 99, 199, 237, 413, 446, 521
HpyCH4V	TGCA	2 cut(s)	35, 164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	3 cut(s)	242, 371, 419
HpySE526I	ACGT	7 cut(s)	29, 99, 199, 237, 413, 446, 521
Hsp92I	GRCGYC	2 cut(s)	237, 521
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	141
Kpn2I	TCCGGA	1 cut(s)	363
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	403
LguI	GCTCTTC	1 cut(s)	430
LpnPI	CCDG	6 cut(s)	199, 217, 377, 391, 481, 550
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	7 cut(s)	29, 99, 199, 237, 413, 446, 521
MaeIII	GTNAC	2 cut(s)	118, 514
MalI	GATC	1 cut(s)	405
MboI	GATC	1 cut(s)	403
MboII	GAAGA	4 cut(s)	12, 34, 417, 520
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	1 cut(s)	541
MluI	ACGCGT	1 cut(s)	108
MlyI	GAGTC	2 cut(s)	320, 522
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	6 cut(s)	146, 255, 371, 440, 471, 566
MroI	TCCGGA	1 cut(s)	363
MroNI	GCCGGC	1 cut(s)	203
MspI	CCGG	2 cut(s)	204, 364
MvnI	CGCG	3 cut(s)	90, 110, 312
MwoI	GCNNNNNNNGC	1 cut(s)	170
NaeI	GCCGGC	1 cut(s)	205
NdeII	GATC	1 cut(s)	403
NgoMIV	GCCGGC	1 cut(s)	203
NheI	GCTAGC	1 cut(s)	565
NlaIII	CATG	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	514
NruI	TCGCGA	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	291, 502
PflFI	GACNNNGTC	1 cut(s)	478
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	2 cut(s)	393, 571
PleI	GAGTC	2 cut(s)	320, 521
PmaCI	CACGTG	2 cut(s)	200, 447
PmlI	CACGTG	2 cut(s)	200, 447
PpsI	GAGTC	2 cut(s)	320, 521
Ppu21I	YACGTR	3 cut(s)	200, 414, 447
PshAI	GACNNNNGTC	1 cut(s)	447
PspCI	CACGTG	2 cut(s)	200, 447
PspFI	CCCAGC	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	478
RruI	TCGCGA	1 cut(s)	312
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SapI	GCTCTTC	1 cut(s)	430
SatI	GCNGC	2 cut(s)	392, 570
Sau3AI	GATC	1 cut(s)	403
SchI	GAGTC	2 cut(s)	320, 522
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	1 cut(s)	173
Sse9I	AATT	1 cut(s)	541
SsiI	CCGC	1 cut(s)	569
SspMI	CTAG	1 cut(s)	566
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	3 cut(s)	81, 182, 493
TaiI	ACGT	7 cut(s)	32, 102, 202, 240, 416, 449, 524
TaqI	TCGA	1 cut(s)	473
TaqII	GACCGA	1 cut(s)	303
TasI	AATT	1 cut(s)	541
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	2 cut(s)	291, 502
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	17, 60
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	1 cut(s)	439
Tth111I	GACNNNGTC	1 cut(s)	478
Van91I	CCANNNNNTGG	1 cut(s)	192
XspI	CTAG	1 cut(s)	566
ZraI	GACGTC	2 cut(s)	238, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.