Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014556

Physical Location & Seq

Genomic Coordinates Forward (+)

22064410 .. 22065375

Gene Structure 966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G261300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAAAATGGCATGTTCCAATTACGTTTTAGCATTCATTTTGCTTGCAGTATGCCTGATCAATTCTGTCCAGTTGGTATCTGGAAATGGGAATCAAAACAATGTCCAAAAGGCTTGCAGTGTGACCAGATATCAAGACCTCTGCATCCACTCACTTGCTTCATTTTCAAGCTCGGCCAAGAGCAGCCCTAGCAGGTGGGCTAGAGCTGCGGTTTCAGTGACATTAGGTGAGGCCAAGAGTGTGGCTCAGTACTTGCTAGCTCTGCAAAAGCACAGCGGCATCAATGGAAGGAGAAGCAGAGTTGCTCTGTCTGATTGCATTGAATGCTTTCAAAACGCAATCGACGAGCTTCACAAATCACTTGGTGTTCTCAGGAGTCTAAGTCGAACGACTTTTGACACGCAAATGGGTGACCTCAATACGTGGCTGAGTGCTGCCCTTACCAATGGAGACACTTGTTTGGATGGCTTTGAGGGCCAGAGAGGAAGACAAGTCAAATTGCTTCAAAACAAGGTCTTAAAAGCCACTCATATCACCAGCAATGCTCTGGCTCTTGCCAACAAACTTGCCGCCACTGGCCTGGAAAGCCTCCCTCATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0004857 GO:0007275 GO:0008150 GO:0009791 GO:0010154 GO:0010214 GO:0022414 GO:0030234 GO:0032501 GO:0032502 GO:0043086 GO:0044092 GO:0046910 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050790 GO:0061458 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

201

Amino Acids

21.5

Weight (kDa)

9.32

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47670 AT3G62820
fragaria_vesca	FvH4_2g25710
malus_domestica	MD03G1288100.v1.1 MD11G1310200.v1.1
prunus_persica	Prupe.8G261300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293991
rosa_laevigata	RLG00000011909
rosa_multiflora	Rmu_sc0005126.1_g000006 Rmu_sc0005647.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173760
rosa_rugosa	Rorug06G0239900
rosa_samantha	Rh6AG352900 Rh6BG359900 Rh6CG367200 Rh6DG353600
rosa_wichuraiana	Rw6G030750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	183
AciI	CCGC	3 cut(s)	209, 276, 570
AcoI	YGGCCR	1 cut(s)	174
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	251
AgsI	TTSAA	4 cut(s)	168, 323, 332, 506
AjnI	CCWGG	1 cut(s)	579
AluBI	AGCT	4 cut(s)	171, 206, 260, 349
AluI	AGCT	4 cut(s)	171, 206, 260, 349
Alw26I	GTCTC	1 cut(s)	444
AoxI	GGCC	4 cut(s)	174, 231, 475, 577
ApeKI	GCWGC	3 cut(s)	183, 206, 434
Asp700I	GAANNNNTTC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	3 cut(s)	239, 422, 526
AsuNHI	GCTAGC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	493
BbvI	GCAGC	3 cut(s)	193, 195, 421
BccI	CCATC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	581
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	3 cut(s)	189, 201, 257
BfuAI	ACCTGC	1 cut(s)	183
BisI	GCNGC	5 cut(s)	184, 207, 277, 435, 570
BlsI	GCNGC	5 cut(s)	185, 208, 278, 436, 571
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	475
BmrFI	CCNGG	1 cut(s)	581
BmsI	GCATC	2 cut(s)	153, 288
BmtI	GCTAGC	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	493
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BsaAI	YACGTR	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bse1I	ACTGG	2 cut(s)	70, 580
Bse3DI	GCAATG	1 cut(s)	547
BseBI	CCWGG	1 cut(s)	581
BseGI	GGATG	2 cut(s)	144, 469
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	3 cut(s)	260, 385, 419
BseNI	ACTGG	2 cut(s)	70, 580
BseXI	GCAGC	3 cut(s)	193, 195, 421
BshFI	GGCC	4 cut(s)	176, 233, 477, 579
BsmAI	GTCTC	1 cut(s)	444
BsmI	GAATGC	2 cut(s)	32, 329
BsnI	GGCC	4 cut(s)	176, 233, 477, 579
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	3 cut(s)	209, 276, 570
BspANI	GGCC	4 cut(s)	176, 233, 477, 579
BspCNI	CTCAG	3 cut(s)	259, 384, 420
BspMI	ACCTGC	1 cut(s)	183
BspOI	GCTAGC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	547
BsrI	ACTGG	2 cut(s)	70, 580
BssMI	GATC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	581
BstAPI	GCANNNNNTGC	1 cut(s)	324
BstBAI	YACGTR	1 cut(s)	423
BstC8I	GCNNGC	3 cut(s)	45, 115, 258
BstDEI	CTNAG	4 cut(s)	246, 371, 380, 428
BstEII	GGTNACC	1 cut(s)	410
BstF5I	GGATG	2 cut(s)	144, 469
BstKTI	GATC	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	6 cut(s)	189, 206, 262, 324, 474, 585
BstNI	CCWGG	1 cut(s)	581
BstNSI	RCATGY	1 cut(s)	15
BstPI	GGTNACC	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	579
BstV1I	GCAGC	3 cut(s)	193, 195, 421
BstV2I	GAAGAC	1 cut(s)	493
BstXI	CCANNNNNNTGG	2 cut(s)	241, 580
BsuRI	GGCC	4 cut(s)	176, 233, 477, 579
BtsCI	GGATG	2 cut(s)	144, 469
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	3 cut(s)	124, 222, 573
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	3 cut(s)	45, 115, 258
Cfr13I	GGNCC	1 cut(s)	475
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	1 cut(s)	12
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	4 cut(s)	246, 371, 380, 428
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
DraIII	CACNNNGTG	1 cut(s)	365
EaeI	YGGCCR	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	131
Eco91I	GGTNACC	1 cut(s)	410
EcoO65I	GGTNACC	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	579
EcoRV	GATATC	1 cut(s)	131
FaeI	CATG	1 cut(s)	15
FaiI	YATR	4 cut(s)	13, 52, 531, 601
FatI	CATG	1 cut(s)	11
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	5 cut(s)	184, 207, 277, 435, 570
FokI	GGATG	2 cut(s)	131, 476
Fsp4HI	GCNGC	5 cut(s)	184, 207, 277, 435, 570
FspBI	CTAG	3 cut(s)	189, 201, 257
GluI	GCNGC	5 cut(s)	184, 207, 277, 435, 570
HaeIII	GGCC	4 cut(s)	176, 233, 477, 579
Hin1II	CATG	1 cut(s)	15
HinfI	GANTC	2 cut(s)	91, 376
HphI	GGTGA	3 cut(s)	239, 422, 526
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	3 cut(s)	81, 134, 373
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	282
HpyCH4IV	ACGT	2 cut(s)	24, 422
HpyCH4V	TGCA	5 cut(s)	47, 117, 144, 265, 318
HpyF10VI	GCNNNNNNNGC	6 cut(s)	189, 206, 262, 324, 474, 585
HpyF3I	CTNAG	4 cut(s)	246, 371, 380, 428
HpySE526I	ACGT	2 cut(s)	24, 422
Hsp92II	CATG	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	57
Lsp1109I	GCAGC	3 cut(s)	193, 195, 421
LweI	GCATC	2 cut(s)	153, 288
MaeI	CTAG	3 cut(s)	189, 201, 257
MaeII	ACGT	2 cut(s)	24, 422
MaeIII	GTNAC	3 cut(s)	121, 217, 410
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	1 cut(s)	498
MluCI	AATT	3 cut(s)	19, 61, 497
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	7 cut(s)	149, 223, 425, 466, 476, 599, 603
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	1 cut(s)	518
MslI	CAYNNNNRTG	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	581
Mva1269I	GAATGC	2 cut(s)	32, 329
MvaI	CCWGG	1 cut(s)	581
MwoI	GCNNNNNNNGC	6 cut(s)	189, 206, 262, 324, 474, 585
NdeII	GATC	1 cut(s)	57
NheI	GCTAGC	1 cut(s)	256
NlaIII	CATG	1 cut(s)	15
NmeAIII	GCCGAG	1 cut(s)	152
NmuCI	GTSAC	3 cut(s)	121, 217, 410
NspI	RCATGY	1 cut(s)	15
PaqCI	CACCTGC	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PctI	GAATGC	2 cut(s)	32, 329
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	5 cut(s)	185, 208, 278, 436, 571
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
Ppu21I	YACGTR	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	579
PspEI	GGTNACC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	579
PspPI	GGNCC	1 cut(s)	475
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	5 cut(s)	184, 207, 277, 435, 570
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	1 cut(s)	475
ScaI	AGTACT	1 cut(s)	251
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	581
SfaNI	GCATC	2 cut(s)	153, 288
SmiMI	CAYNNNNRTG	1 cut(s)	404
Sse9I	AATT	3 cut(s)	19, 61, 497
SsiI	CCGC	3 cut(s)	209, 276, 570
SspMI	CTAG	3 cut(s)	189, 201, 257
StyD4I	CCNGG	1 cut(s)	579
TaiI	ACGT	2 cut(s)	27, 425
TaqI	TCGA	2 cut(s)	342, 385
TasI	AATT	3 cut(s)	19, 61, 497
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	2 cut(s)	279, 572
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	3 cut(s)	124, 222, 580
TseFI	GTSAC	3 cut(s)	121, 217, 410
TseI	GCWGC	3 cut(s)	183, 206, 434
Tsp45I	GTSAC	3 cut(s)	121, 217, 410
TspDTI	ATGAA	4 cut(s)	17, 25, 150, 588
TspRI	CASTG	3 cut(s)	124, 222, 580
XceI	RCATGY	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	2 cut(s)	77, 544
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	3 cut(s)	189, 201, 257
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.