zinc finger (CCCH
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47680 |
| fragaria_vesca | FvH4_2g25691 |
| malus_domestica | MD03G1287700.v1.1 |
| prunus_persica | Prupe.8G260900_v2.0.a1 |
| pyrus_communis | pycom03g22780 |
| rosa_chinensis | RchiOBHm_Chr6g0293951 |
| rosa_laevigata | RLG00000011913 |
| rosa_multiflora | Rmu_sc0005647.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00173800 |
| rosa_rugosa | Rorug06G0239500 |
| rosa_samantha | Rh6AG352600 Rh6BG359500 Rh6CG366800 Rh6DG353200 |
| rosa_wichuraiana | Rw6G030710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 337, 1334 |
| Acc36I | ACCTGC | 1 cut(s) | 649 |
| AccB1I | GGYRCC | 1 cut(s) | 1174 |
| AccII | CGCG | 2 cut(s) | 129, 588 |
| AclWI | GGATC | 5 cut(s) | 951, 1058, 1071, 1313, 1326 |
| AcoI | YGGCCR | 3 cut(s) | 2088, 2143, 2233 |
| AcsI | RAATTY | 4 cut(s) | 345, 1925, 2282, 2737 |
| AcuI | CTGAAG | 5 cut(s) | 708, 1983, 2034, 2243, 2526 |
| AfaI | GTAC | 5 cut(s) | 220, 413, 551, 1089, 1644 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 158, 514, 967 |
| AflII | CTTAAG | 1 cut(s) | 1226 |
| AflIII | ACRYGT | 3 cut(s) | 586, 1148, 1681 |
| AgsI | TTSAA | 5 cut(s) | 355, 400, 1202, 1709, 1717 |
| AjnI | CCWGG | 4 cut(s) | 151, 706, 1170, 2513 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 706, 738, 803, 835 |
| Alw21I | GWGCWC | 3 cut(s) | 2155, 2243, 2751 |
| Alw26I | GTCTC | 8 cut(s) | 549, 1050, 1074, 1108, 1234, 2540, 2600, 2953 |
| Alw44I | GTGCAC | 1 cut(s) | 2239 |
| AlwI | GGATC | 5 cut(s) | 951, 1058, 1071, 1313, 1326 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 4 cut(s) | 2088, 2143, 2187, 2233 |
| ApaLI | GTGCAC | 1 cut(s) | 2239 |
| ApeKI | GCWGC | 3 cut(s) | 853, 1263, 1608 |
| ApoI | RAATTY | 4 cut(s) | 345, 1925, 2282, 2737 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1583, 1615, 2984, 3016 |
| AseI | ATTAAT | 1 cut(s) | 1284 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2741 |
| AspA2I | CCTAGG | 2 cut(s) | 227, 1391 |
| AspS9I | GGNCC | 2 cut(s) | 710, 2188 |
| AsuHPI | GGTGA | 4 cut(s) | 593, 1169, 1493, 2476 |
| AsuNHI | GCTAGC | 2 cut(s) | 1433, 2845 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 710 |
| AvrII | CCTAGG | 2 cut(s) | 227, 1391 |
| AxyI | CCTNAGG | 2 cut(s) | 509, 2163 |
| BaeGI | GKGCMC | 1 cut(s) | 2243 |
| BalI | TGGCCA | 3 cut(s) | 2090, 2145, 2235 |
| BamHI | GGATCC | 2 cut(s) | 1063, 1318 |
| BanI | GGYRCC | 1 cut(s) | 1174 |
| BanII | GRGCYC | 2 cut(s) | 1215, 1410 |
| BauI | CACGAG | 1 cut(s) | 1036 |
| BbsI | GAAGAC | 2 cut(s) | 18, 2532 |
| Bbv12I | GWGCWC | 3 cut(s) | 2155, 2243, 2751 |
| BbvI | GCAGC | 3 cut(s) | 865, 1250, 1620 |
| BccI | CCATC | 9 cut(s) | 253, 1148, 1225, 1519, 1557, 1633, 2134, 2390, 2988 |
| BceAI | ACGGC | 1 cut(s) | 2023 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2269, 2288, 2303, 2322 |
| BciT130I | CCWGG | 4 cut(s) | 153, 708, 1172, 2515 |
| BciVI | GTATCC | 2 cut(s) | 1522, 2462 |
| BclI | TGATCA | 1 cut(s) | 1930 |
| BcoDI | GTCTC | 8 cut(s) | 549, 1050, 1074, 1108, 1234, 2540, 2600, 2953 |
| BfmI | CTRYAG | 1 cut(s) | 2732 |
| BfrI | CTTAAG | 1 cut(s) | 1226 |
| BfuAI | ACCTGC | 1 cut(s) | 649 |
| BfuI | GTATCC | 2 cut(s) | 1522, 2462 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 938 |
| BglII | AGATCT | 4 cut(s) | 446, 460, 1109, 1747 |
| BisI | GCNGC | 5 cut(s) | 854, 939, 964, 1264, 1609 |
| BlnI | CCTAGG | 2 cut(s) | 227, 1391 |
| BlpI | GCTNAGC | 1 cut(s) | 1119 |
| BlsI | GCNGC | 5 cut(s) | 855, 940, 965, 1265, 1610 |
| Bme1390I | CCNGG | 4 cut(s) | 153, 708, 1172, 2515 |
| Bme18I | GGWCC | 1 cut(s) | 710 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgT120I | GGNCC | 2 cut(s) | 710, 2188 |
| BmiI | GGNNCC | 7 cut(s) | 207, 873, 1065, 1176, 1320, 2190, 2681 |
| BmrFI | CCNGG | 4 cut(s) | 153, 708, 1172, 2515 |
| BmrI | ACTGGG | 2 cut(s) | 1801, 2186 |
| BmsI | GCATC | 8 cut(s) | 146, 893, 1336, 1347, 1444, 1466, 1708, 2300 |
| BmtI | GCTAGC | 2 cut(s) | 1437, 2849 |
| BmuI | ACTGGG | 2 cut(s) | 1801, 2186 |
| BpiI | GAAGAC | 2 cut(s) | 18, 2532 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2784, 2816 |
| BpmI | CTGGAG | 3 cut(s) | 384, 2536, 2935 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1119 |
| BpuEI | CTTGAG | 4 cut(s) | 674, 869, 1736, 2473 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1698, 1971, 1998 |
| BsaI | GGTCTC | 3 cut(s) | 1050, 1108, 2600 |
| BsaJI | CCNNGG | 7 cut(s) | 227, 933, 1391, 2146, 2227, 2651, 2869 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1126, 1156, 1236, 1266 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 158, 514, 967 |
| Bse118I | RCCGGY | 1 cut(s) | 1041 |
| Bse1I | ACTGG | 5 cut(s) | 1807, 2091, 2192, 2236, 2998 |
| Bse21I | CCTNAGG | 2 cut(s) | 509, 2163 |
| Bse3DI | GCAATG | 3 cut(s) | 987, 1298, 1376 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1698, 1971, 1998 |
| BseBI | CCWGG | 4 cut(s) | 153, 708, 1172, 2515 |
| BseDI | CCNNGG | 7 cut(s) | 227, 933, 1391, 2146, 2227, 2651, 2869 |
| BseGI | GGATG | 9 cut(s) | 161, 382, 1362, 1552, 2309, 2453, 2602, 2980, 2994 |
| BseJI | GATNNNNATC | 3 cut(s) | 1698, 1971, 1998 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 158, 514, 967 |
| BseMI | GCAATG | 3 cut(s) | 987, 1298, 1376 |
| BseMII | CTCAG | 9 cut(s) | 523, 1110, 1127, 1758, 1821, 1974, 2154, 2433, 2703 |
| BseNI | ACTGG | 5 cut(s) | 1807, 2091, 2192, 2236, 2998 |
| BseRI | GAGGAG | 1 cut(s) | 49 |
| BseSI | GKGCMC | 1 cut(s) | 2243 |
| BseXI | GCAGC | 3 cut(s) | 865, 1250, 1620 |
| BsgI | GTGCAG | 1 cut(s) | 1249 |
| Bsh1236I | CGCG | 2 cut(s) | 129, 588 |
| BshFI | GGCC | 4 cut(s) | 2090, 2145, 2189, 2235 |
| BshNI | GGYRCC | 1 cut(s) | 1174 |
| BsiHKAI | GWGCWC | 3 cut(s) | 2155, 2243, 2751 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 1042 |
| BslFI | GGGAC | 1 cut(s) | 1410 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 158, 514, 967 |
| BsmAI | GTCTC | 8 cut(s) | 549, 1050, 1074, 1108, 1234, 2540, 2600, 2953 |
| BsmBI | CGTCTC | 2 cut(s) | 1074, 2540 |
| BsmFI | GGGAC | 1 cut(s) | 1410 |
| BsmI | GAATGC | 5 cut(s) | 316, 406, 1497, 2057, 2909 |
| BsnI | GGCC | 4 cut(s) | 2090, 2145, 2189, 2235 |
| Bso31I | GGTCTC | 3 cut(s) | 1050, 1108, 2600 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1215, 1410, 2155, 2243, 2751 |
| Bsp1407I | TGTACA | 1 cut(s) | 218 |
| Bsp143I | GATC | 9 cut(s) | 446, 460, 769, 956, 1063, 1109, 1318, 1747, 1930 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1119 |
| Bsp19I | CCATGG | 1 cut(s) | 2146 |
| BspANI | GGCC | 4 cut(s) | 2090, 2145, 2189, 2235 |
| BspCNI | CTCAG | 9 cut(s) | 522, 1111, 1126, 1759, 1822, 1975, 2155, 2434, 2704 |
| BspFNI | CGCG | 2 cut(s) | 129, 588 |
| BspHI | TCATGA | 3 cut(s) | 492, 766, 787 |
| BspLI | GGNNCC | 7 cut(s) | 207, 873, 1065, 1176, 1320, 2190, 2681 |
| BspMAI | CTGCAG | 1 cut(s) | 2736 |
| BspMI | ACCTGC | 1 cut(s) | 649 |
| BspOI | GCTAGC | 2 cut(s) | 1437, 2849 |
| BspPI | GGATC | 5 cut(s) | 951, 1058, 1071, 1313, 1326 |
| BspQI | GCTCTTC | 2 cut(s) | 40, 2407 |
| BspT107I | GGYRCC | 1 cut(s) | 1174 |
| BspTI | CTTAAG | 1 cut(s) | 1226 |
| BspTNI | GGTCTC | 3 cut(s) | 1050, 1108, 2600 |
| BsrDI | GCAATG | 3 cut(s) | 987, 1298, 1376 |
| BsrFI | RCCGGY | 1 cut(s) | 1041 |
| BsrGI | TGTACA | 1 cut(s) | 218 |
| BsrI | ACTGG | 5 cut(s) | 1807, 2091, 2192, 2236, 2998 |
| BssAI | RCCGGY | 1 cut(s) | 1041 |
| BssECI | CCNNGG | 7 cut(s) | 227, 933, 1391, 2146, 2227, 2651, 2869 |
| BssMI | GATC | 9 cut(s) | 446, 460, 769, 956, 1063, 1109, 1318, 1747, 1930 |
| BssSI | CACGAG | 1 cut(s) | 1036 |
| BssT1I | CCWWGG | 5 cut(s) | 227, 933, 1391, 2146, 2869 |
| Bst2BI | CACGAG | 1 cut(s) | 1036 |
| Bst2UI | CCWGG | 4 cut(s) | 153, 708, 1172, 2515 |
| Bst4CI | ACNGT | 6 cut(s) | 183, 704, 1425, 1575, 2228, 2504 |
| Bst6I | CTCTTC | 8 cut(s) | 40, 158, 634, 806, 2262, 2407, 3024, 3039 |
| BstAFI | CTTAAG | 1 cut(s) | 1226 |
| BstAUI | TGTACA | 1 cut(s) | 218 |
| BstC8I | GCNNGC | 8 cut(s) | 149, 930, 1305, 1431, 1435, 2278, 2672, 2847 |
| BstDSI | CCRYGG | 3 cut(s) | 2146, 2227, 2651 |
| BstEII | GGTNACC | 1 cut(s) | 302 |
| BstF5I | GGATG | 9 cut(s) | 161, 382, 1362, 1552, 2309, 2453, 2602, 2980, 2994 |
| BstFNI | CGCG | 2 cut(s) | 129, 588 |
| BstKTI | GATC | 9 cut(s) | 449, 463, 772, 959, 1066, 1112, 1321, 1750, 1933 |
| BstMAI | GTCTC | 8 cut(s) | 549, 1050, 1074, 1108, 1234, 2540, 2600, 2953 |
| BstMBI | GATC | 9 cut(s) | 446, 460, 769, 956, 1063, 1109, 1318, 1747, 1930 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 203, 245, 938, 960, 1304, 1387, 2063 |
| BstNI | CCWGG | 4 cut(s) | 153, 708, 1172, 2515 |
| BstNSI | RCATGY | 3 cut(s) | 1152, 1941, 2479 |
| BstPI | GGTNACC | 1 cut(s) | 302 |
| BstSCI | CCNGG | 4 cut(s) | 151, 706, 1170, 2513 |
| BstSFI | CTRYAG | 1 cut(s) | 2732 |
| BstSLI | GKGCMC | 1 cut(s) | 2243 |
| BstUI | CGCG | 2 cut(s) | 129, 588 |
| BstV1I | GCAGC | 3 cut(s) | 865, 1250, 1620 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 2532 |
| BstX2I | RGATCY | 7 cut(s) | 446, 460, 956, 1063, 1109, 1318, 1747 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1601, 2652 |
| BstYI | RGATCY | 7 cut(s) | 446, 460, 956, 1063, 1109, 1318, 1747 |
| Bsu36I | CCTNAGG | 2 cut(s) | 509, 2163 |
| BsuI | GTATCC | 2 cut(s) | 1522, 2462 |
| BsuRI | GGCC | 4 cut(s) | 2090, 2145, 2189, 2235 |
| BtgI | CCRYGG | 3 cut(s) | 2146, 2227, 2651 |
| BtgZI | GCGATG | 3 cut(s) | 104, 2280, 2394 |
| BtsCI | GGATG | 9 cut(s) | 161, 382, 1362, 1552, 2309, 2453, 2602, 2980, 2994 |
| BtsIMutI | CAGTG | 3 cut(s) | 1571, 2040, 2243 |
| BveI | ACCTGC | 1 cut(s) | 649 |
| Cac8I | GCNNGC | 8 cut(s) | 149, 930, 1305, 1431, 1435, 2278, 2672, 2847 |
| CciI | TCATGA | 3 cut(s) | 492, 766, 787 |
| Cfr10I | RCCGGY | 1 cut(s) | 1041 |
| Cfr13I | GGNCC | 2 cut(s) | 710, 2188 |
| CseI | GACGC | 4 cut(s) | 118, 1091, 1298, 2557 |
| Csp6I | GTAC | 5 cut(s) | 219, 412, 550, 1088, 1643 |
| CviQI | GTAC | 5 cut(s) | 219, 412, 550, 1088, 1643 |
| DpnI | GATC | 9 cut(s) | 448, 462, 771, 958, 1065, 1111, 1320, 1749, 1932 |
| DpnII | GATC | 9 cut(s) | 446, 460, 769, 956, 1063, 1109, 1318, 1747, 1930 |
| DraI | TTTAAA | 1 cut(s) | 565 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 337, 1334 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 337, 1334 |
| EaeI | YGGCCR | 3 cut(s) | 2088, 2143, 2233 |
| Eam1104I | CTCTTC | 8 cut(s) | 40, 158, 634, 806, 2262, 2407, 3024, 3039 |
| EarI | CTCTTC | 8 cut(s) | 40, 158, 634, 806, 2262, 2407, 3024, 3039 |
| EciI | GGCGGA | 2 cut(s) | 1645, 2973 |
| Eco130I | CCWWGG | 5 cut(s) | 227, 933, 1391, 2146, 2869 |
| Eco24I | GRGCYC | 2 cut(s) | 1215, 1410 |
| Eco31I | GGTCTC | 3 cut(s) | 1050, 1108, 2600 |
| Eco47I | GGWCC | 1 cut(s) | 710 |
| Eco57I | CTGAAG | 5 cut(s) | 708, 1983, 2034, 2243, 2526 |
| Eco81I | CCTNAGG | 2 cut(s) | 509, 2163 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 302 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2188 |
| EcoO65I | GGTNACC | 1 cut(s) | 302 |
| EcoRII | CCWGG | 4 cut(s) | 151, 706, 1170, 2513 |
| EcoT14I | CCWWGG | 5 cut(s) | 227, 933, 1391, 2146, 2869 |
| EcoT22I | ATGCAT | 4 cut(s) | 1300, 1351, 1459, 2481 |
| EcoT38I | GRGCYC | 2 cut(s) | 1215, 1410 |
| ErhI | CCWWGG | 5 cut(s) | 227, 933, 1391, 2146, 2869 |
| Esp3I | CGTCTC | 2 cut(s) | 1074, 2540 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 706, 738, 1833, 1865 |
| FaqI | GGGAC | 1 cut(s) | 1410 |
| FauI | CCCGC | 2 cut(s) | 152, 968 |
| FauNDI | CATATG | 2 cut(s) | 1024, 1921 |
| FbaI | TGATCA | 1 cut(s) | 1930 |
| Fnu4HI | GCNGC | 5 cut(s) | 854, 939, 964, 1264, 1609 |
| FokI | GGATG | 9 cut(s) | 168, 389, 1369, 1539, 2316, 2460, 2589, 2967, 2981 |
| FriOI | GRGCYC | 2 cut(s) | 1215, 1410 |
| Fsp4HI | GCNGC | 5 cut(s) | 854, 939, 964, 1264, 1609 |
| GluI | GCNGC | 5 cut(s) | 854, 939, 964, 1264, 1609 |
| GsuI | CTGGAG | 3 cut(s) | 384, 2536, 2935 |
| HaeIII | GGCC | 4 cut(s) | 2090, 2145, 2189, 2235 |
| HapII | CCGG | 1 cut(s) | 1042 |
| HgaI | GACGC | 4 cut(s) | 118, 1091, 1298, 2557 |
| HincII | GTYRAC | 3 cut(s) | 1342, 1591, 2265 |
| HindII | GTYRAC | 3 cut(s) | 1342, 1591, 2265 |
| HindIII | AAGCTT | 4 cut(s) | 1196, 2777, 2857, 2899 |
| HpaII | CCGG | 1 cut(s) | 1042 |
| HphI | GGTGA | 4 cut(s) | 593, 1169, 1493, 2476 |
| Hpy99I | CGWCG | 3 cut(s) | 146, 2349, 2352 |
| HpyAV | CCTTC | 9 cut(s) | 197, 329, 729, 839, 2375, 2393, 2426, 2628, 2997 |
| HpyCH4III | ACNGT | 6 cut(s) | 183, 704, 1425, 1575, 2228, 2504 |
| HpyCH4IV | ACGT | 7 cut(s) | 1126, 1399, 1681, 1989, 2172, 2243, 2814 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 203, 245, 938, 960, 1304, 1387, 2063 |
| HpySE526I | ACGT | 7 cut(s) | 1126, 1399, 1681, 1989, 2172, 2243, 2814 |
| Ksp22I | TGATCA | 1 cut(s) | 1930 |
| Kzo9I | GATC | 9 cut(s) | 446, 460, 769, 956, 1063, 1109, 1318, 1747, 1930 |
| LguI | GCTCTTC | 2 cut(s) | 40, 2407 |
| LmnI | GCTCC | 2 cut(s) | 211, 2150 |
| Lsp1109I | GCAGC | 3 cut(s) | 865, 1250, 1620 |
| LweI | GCATC | 8 cut(s) | 146, 893, 1336, 1347, 1444, 1466, 1708, 2300 |
| MaeII | ACGT | 7 cut(s) | 1126, 1399, 1681, 1989, 2172, 2243, 2814 |
| MaeIII | GTNAC | 7 cut(s) | 45, 130, 302, 1003, 1400, 2222, 3005 |
| MalI | GATC | 9 cut(s) | 448, 462, 771, 958, 1065, 1111, 1320, 1749, 1932 |
| MboI | GATC | 9 cut(s) | 446, 460, 769, 956, 1063, 1109, 1318, 1747, 1930 |
| MfeI | CAATTG | 1 cut(s) | 866 |
| MflI | RGATCY | 7 cut(s) | 446, 460, 956, 1063, 1109, 1318, 1747 |
| MhlI | GDGCHC | 5 cut(s) | 1215, 1410, 2155, 2243, 2751 |
| MlsI | TGGCCA | 3 cut(s) | 2090, 2145, 2235 |
| MluCI | AATT | 8 cut(s) | 297, 345, 627, 866, 1877, 1925, 2282, 2737 |
| MluI | ACGCGT | 1 cut(s) | 586 |
| MluNI | TGGCCA | 3 cut(s) | 2090, 2145, 2235 |
| MlyI | GAGTC | 4 cut(s) | 464, 1028, 2462, 2885 |
| MmeI | TCCRAC | 3 cut(s) | 87, 354, 857 |
| Mox20I | TGGCCA | 3 cut(s) | 2090, 2145, 2235 |
| Mph1103I | ATGCAT | 4 cut(s) | 1300, 1351, 1459, 2481 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2741 |
| MscI | TGGCCA | 3 cut(s) | 2090, 2145, 2235 |
| Msp20I | TGGCCA | 3 cut(s) | 2090, 2145, 2235 |
| MspA1I | CMGCKG | 1 cut(s) | 728 |
| MspCI | CTTAAG | 1 cut(s) | 1226 |
| MspI | CCGG | 1 cut(s) | 1042 |
| MspR9I | CCNGG | 4 cut(s) | 153, 708, 1172, 2515 |
| MunI | CAATTG | 1 cut(s) | 866 |
| Mva1269I | GAATGC | 5 cut(s) | 316, 406, 1497, 2057, 2909 |
| MvaI | CCWGG | 4 cut(s) | 153, 708, 1172, 2515 |
| MvnI | CGCG | 2 cut(s) | 129, 588 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 203, 245, 938, 960, 1304, 1387, 2063 |
| NcoI | CCATGG | 1 cut(s) | 2146 |
| NdeI | CATATG | 2 cut(s) | 1024, 1921 |
| NdeII | GATC | 9 cut(s) | 446, 460, 769, 956, 1063, 1109, 1318, 1747, 1930 |
| NheI | GCTAGC | 2 cut(s) | 1433, 2845 |
| NlaIV | GGNNCC | 7 cut(s) | 207, 873, 1065, 1176, 1320, 2190, 2681 |
| NmeAIII | GCCGAG | 2 cut(s) | 1203, 2748 |
| NmuCI | GTSAC | 1 cut(s) | 130 |
| NsiI | ATGCAT | 4 cut(s) | 1300, 1351, 1459, 2481 |
| NspI | RCATGY | 3 cut(s) | 1152, 1941, 2479 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 3 cut(s) | 492, 766, 787 |
| PciI | ACATGT | 1 cut(s) | 1148 |
| PciSI | GCTCTTC | 2 cut(s) | 40, 2407 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 20, 126 |
| PctI | GAATGC | 5 cut(s) | 316, 406, 1497, 2057, 2909 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2741 |
| PflFI | GACNNNGTC | 1 cut(s) | 22 |
| PfoI | TCCNGGA | 1 cut(s) | 2513 |
| PkrI | GCNGC | 5 cut(s) | 855, 940, 965, 1265, 1610 |
| PleI | GAGTC | 4 cut(s) | 463, 1028, 2462, 2884 |
| PpsI | GAGTC | 4 cut(s) | 463, 1028, 2462, 2884 |
| PscI | ACATGT | 1 cut(s) | 1148 |
| PshBI | ATTAAT | 1 cut(s) | 1284 |
| Psp6I | CCWGG | 4 cut(s) | 151, 706, 1170, 2513 |
| PspEI | GGTNACC | 1 cut(s) | 302 |
| PspGI | CCWGG | 4 cut(s) | 151, 706, 1170, 2513 |
| PspN4I | GGNNCC | 7 cut(s) | 207, 873, 1065, 1176, 1320, 2190, 2681 |
| PspPI | GGNCC | 2 cut(s) | 710, 2188 |
| PstI | CTGCAG | 1 cut(s) | 2736 |
| PsuI | RGATCY | 7 cut(s) | 446, 460, 956, 1063, 1109, 1318, 1747 |
| PsyI | GACNNNGTC | 1 cut(s) | 22 |
| PvuII | CAGCTG | 1 cut(s) | 728 |
| RsaI | GTAC | 5 cut(s) | 220, 413, 551, 1089, 1644 |
| RsaNI | GTAC | 5 cut(s) | 219, 412, 550, 1088, 1643 |
| SapI | GCTCTTC | 2 cut(s) | 40, 2407 |
| SatI | GCNGC | 5 cut(s) | 854, 939, 964, 1264, 1609 |
| Sau3AI | GATC | 9 cut(s) | 446, 460, 769, 956, 1063, 1109, 1318, 1747, 1930 |
| Sau96I | GGNCC | 2 cut(s) | 710, 2188 |
| SchI | GAGTC | 4 cut(s) | 464, 1028, 2462, 2885 |
| ScrFI | CCNGG | 4 cut(s) | 153, 708, 1172, 2515 |
| SduI | GDGCHC | 5 cut(s) | 1215, 1410, 2155, 2243, 2751 |
| SfaNI | GCATC | 8 cut(s) | 146, 893, 1336, 1347, 1444, 1466, 1708, 2300 |
| SfcI | CTRYAG | 1 cut(s) | 2732 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 710 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmlI | CTYRAG | 6 cut(s) | 119, 653, 848, 1226, 1751, 2488 |
| SmoI | CTYRAG | 6 cut(s) | 119, 653, 848, 1226, 1751, 2488 |
| Sse9I | AATT | 8 cut(s) | 297, 345, 627, 866, 1877, 1925, 2282, 2737 |
| SspI | AATATT | 2 cut(s) | 975, 1801 |
| StyD4I | CCNGG | 4 cut(s) | 151, 706, 1170, 2513 |
| StyI | CCWWGG | 5 cut(s) | 227, 933, 1391, 2146, 2869 |
| TaaI | ACNGT | 6 cut(s) | 183, 704, 1425, 1575, 2228, 2504 |
| TaiI | ACGT | 7 cut(s) | 1129, 1402, 1684, 1992, 2175, 2246, 2817 |
| TaqI | TCGA | 8 cut(s) | 108, 120, 341, 1144, 2157, 2308, 2463, 2745 |
| TaqII | GACCGA | 1 cut(s) | 347 |
| TasI | AATT | 8 cut(s) | 297, 345, 627, 866, 1877, 1925, 2282, 2737 |
| TatI | WGTACW | 3 cut(s) | 218, 411, 1087 |
| TauI | GCSGC | 2 cut(s) | 941, 966 |
| TscAI | CASTG | 3 cut(s) | 1578, 2040, 2243 |
| TseFI | GTSAC | 1 cut(s) | 130 |
| TseI | GCWGC | 3 cut(s) | 853, 1263, 1608 |
| Tsp45I | GTSAC | 1 cut(s) | 130 |
| TspGWI | ACGGA | 4 cut(s) | 1056, 1283, 2365, 2499 |
| TspRI | CASTG | 3 cut(s) | 1578, 2040, 2243 |
| Tth111I | GACNNNGTC | 1 cut(s) | 22 |
| Vha464I | CTTAAG | 1 cut(s) | 1226 |
| VneI | GTGCAC | 1 cut(s) | 2239 |
| VpaK11BI | GGWCC | 1 cut(s) | 710 |
| VspI | ATTAAT | 1 cut(s) | 1284 |
| XapI | RAATTY | 4 cut(s) | 345, 1925, 2282, 2737 |
| XbaI | TCTAGA | 2 cut(s) | 1106, 1579 |
| XceI | RCATGY | 3 cut(s) | 1152, 1941, 2479 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1556, 1601 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 2 cut(s) | 227, 1391 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2741 |
| Zsp2I | ATGCAT | 4 cut(s) | 1300, 1351, 1459, 2481 |