Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007006

Physical Location & Seq

Genomic Coordinates Reverse (-)

38146624 .. 38149845

Gene Structure 3222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0239500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGGAGAAGTGGTTATTGAAACAAACTACATGGGAGATTTACATTTAGCACGGGTCCATTCCTTTAACACCGCCATGGGTACAAGCTCACGGTCTGCTGCTCTAGTCATTCCCATGACAATTAGTTCCAGTGCAAACGAAGATGGTACAAATCCGGGAGGCGTAGGTGGTGAACTCGATAAGCAGGATGCTTGGCTGCCTCTCACAGAATCCAGGAATGGCAGTACCTATTCCGTGACGTTTCATCTACTTTGTTCAGGAATTGGGACTCAAGCTCTTTCACTCCCTGTTGCATTCGCCGCTCTTGGATGGGCATGGGGATGTATATGCTTGTTACTAGCGTTTGCATGGCAGCTCTACACTATACGGCTCCTTGTACTATCCCACGAATCTGATACCGGAACTCGTTATAGTAGATACCTCCAACTTGCTATTAGAGCCTTCGGTCAAAAGCTAGGGAAGTTGCTAGTAATGTTCCCGATGATCTATCTATCAAATGGTGCTTGTGTCCAACTTATTATCGCAGGAGGTCTAACAATGGAGCTTTTCTTCAAAACCGTGTGTAACGATGGGGCTACTACTTATTGTCATCCAATGACTGGTACAGAGTGCTTCTTGGTGTTCATGATCATGGCTATTATTGTGGCTCAGTTTCCCAACTTGAACTCCATAGCTTGGGTCTCTTTGATTGGTTCTATCACAGCAATTGTATATTGCACTATCATCTGGTCTATTTCAATTGCCAAGGGCAGACCTAATGGTATATCATACAATCCACCAGAAATGGAGTCTAATATGGATAGATTTGGTCGGATACTGAATGCGATTGGCATTGTGTTTTTGGCATTCAGAGGTCACAACGTCATTCTTGAAATACAGGGAACATTGCCATCAGAGCCAAAACACCCAATTCATAAGCGAATGTGGAGAGGGGTGATTATATCGTATGCTATCATTGCCATATGCTTGCTTCCTCTAGCCATAGCTGGATTTTGGGCACATGGAAACAAGGTGCCCTCCTCATCAGTTTTAGCAATAACTGCAATACTAAGCTCAGCTGCACAACTACCTGGACACAATAACACCTCAAGGTATGTTCTGGGAGTAATCTGCATTCTTGTAATAATACACTGCTTAAGCACATTTCAAATCTATGGCATGGTAGCCTTTGACAACTTGGAGATGAAGTACACTATGAGGAAGAACAAGCCGTGTGCAAGATGGCTTCGAGTAGCTTTCCGTTTTTTGTTTGGAGGATTGGCATTCTTTATAGCGGTGACCTTTCCGTTCTTCGTAAGCCTGGCACCTCTAATTGGAGGTTTGACATTGCCTATGGCTTATGCTTATCCGTGTTTCATGTGGATCACACTCAAGAAACCGAAGCCGAAAGGTTTAATGTGGTGTATTAACGTGGGACTTGGATGCTTGGGACTGGTTTTGAGTGTTGTTTTAGTGGTTGCAGCAGCATGGAATTTAGCTCAGAAAGGTCTAAATGCCAATTTCTTCAAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C zf-CCCH

Protein Analysis

504

Amino Acids

55.06

Weight (kDa)

9.16

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	73 - 487	8.5e-55	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT4G02430 AT4G02430 AT4G02430 AT4G02430
fragaria_vesca	FvH4_2g25670 FvH4_2g25670 FvH4_2g25670
malus_domestica	MD03G1287500.v1.1 MD11G1310700.v1.1
prunus_persica	Prupe.8G260600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293931
rosa_laevigata	RLG00000011915
rosa_multiflora	Rmu_sc0005647.1_g000008
rosa_roxburghii	Rroxscaffold_7G00173830
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6AG352500 Rh6BG359300 Rh6CG366600 Rh6DG352900
rosa_wichuraiana	Rw6G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1012, 1303
AccB7I	CCANNNNNTGG	2 cut(s)	599, 675
AccBSI	CCGCTC	1 cut(s)	302
AciI	CCGC	3 cut(s)	72, 300, 1274
AclWI	GGATC	1 cut(s)	1370
AcsI	RAATTY	1 cut(s)	1471
AfaI	GTAC	6 cut(s)	82, 148, 226, 378, 604, 1190
AfiI	CCNNNNNNNGG	3 cut(s)	599, 675, 1313
AflII	CTTAAG	1 cut(s)	1135
AgsI	TTSAA	7 cut(s)	20, 553, 664, 738, 872, 1148, 1507
AjnI	CCWGG	3 cut(s)	212, 1069, 1299
Alw26I	GTCTC	1 cut(s)	685
AlwI	GGATC	1 cut(s)	1370
ApeKI	GCWGC	6 cut(s)	98, 196, 352, 1058, 1460, 1463
ApoI	RAATTY	1 cut(s)	1471
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	3 cut(s)	182, 946, 1288
AvaII	GGWCC	1 cut(s)	55
BaeGI	GKGCMC	2 cut(s)	1000, 1017
BanI	GGYRCC	2 cut(s)	1012, 1303
BbvI	GCAGC	6 cut(s)	85, 183, 364, 1045, 1472, 1475
BccI	CCATC	5 cut(s)	137, 303, 563, 898, 1215
BceAI	ACGGC	2 cut(s)	383, 1195
BciT130I	CCWGG	3 cut(s)	214, 1071, 1301
BciVI	GTATCC	1 cut(s)	807
BclI	TGATCA	1 cut(s)	627
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	685
BfaI	CTAG	6 cut(s)	104, 338, 455, 467, 977, 1513
BfrI	CTTAAG	1 cut(s)	1135
BfuI	GTATCC	1 cut(s)	807
BisI	GCNGC	7 cut(s)	99, 197, 300, 353, 1059, 1461, 1464
BlpI	GCTNAGC	1 cut(s)	1054
BlsI	GCNGC	7 cut(s)	100, 198, 301, 354, 1060, 1462, 1465
Bme1390I	CCNGG	4 cut(s)	156, 214, 1071, 1301
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	4 cut(s)	56, 371, 1014, 1305
BmrFI	CCNGG	4 cut(s)	156, 214, 1071, 1301
BmsI	GCATC	2 cut(s)	178, 1412
Bpu1102I	GCTNAGC	1 cut(s)	1054
BpuEI	CTTGAG	3 cut(s)	255, 1072, 1355
BpuMI	CCSGG	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	685
BsaJI	CCNNGG	2 cut(s)	75, 744
BsaWI	WCCGGW	1 cut(s)	398
BsaXI	ACNNNNNCTCC	5 cut(s)	27, 650, 680, 1172, 1202
Bsc4I	CCNNNNNNNGG	3 cut(s)	599, 675, 1313
Bse1I	ACTGG	3 cut(s)	129, 604, 1437
Bse3DI	GCAATG	3 cut(s)	884, 954, 1325
BseBI	CCWGG	3 cut(s)	214, 1071, 1301
BseDI	CCNNGG	2 cut(s)	75, 744
BseGI	GGATG	5 cut(s)	193, 314, 326, 589, 1427
BseLI	CCNNNNNNNGG	3 cut(s)	599, 675, 1313
BseMI	GCAATG	3 cut(s)	884, 954, 1325
BseMII	CTCAG	3 cut(s)	662, 1068, 1493
BseNI	ACTGG	3 cut(s)	129, 604, 1437
BseRI	GAGGAG	1 cut(s)	1009
BseSI	GKGCMC	2 cut(s)	1000, 1017
BseXI	GCAGC	6 cut(s)	85, 183, 364, 1045, 1472, 1475
BsgI	GTGCAG	1 cut(s)	1044
BshNI	GGYRCC	2 cut(s)	1012, 1303
BsiSI	CCGG	2 cut(s)	155, 399
BslFI	GGGAC	3 cut(s)	280, 1428, 1443
BslI	CCNNNNNNNGG	3 cut(s)	599, 675, 1313
BsmAI	GTCTC	1 cut(s)	685
BsmFI	GGGAC	3 cut(s)	280, 1428, 1443
BsmI	GAATGC	5 cut(s)	293, 826, 845, 1113, 1262
Bso31I	GGTCTC	1 cut(s)	685
Bsp1286I	GDGCHC	2 cut(s)	1000, 1017
Bsp143I	GATC	3 cut(s)	483, 627, 1362
Bsp1720I	GCTNAGC	1 cut(s)	1054
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	3 cut(s)	72, 300, 1274
BspCNI	CTCAG	3 cut(s)	661, 1067, 1492
BspHI	TCATGA	1 cut(s)	624
BspLI	GGNNCC	4 cut(s)	56, 371, 1014, 1305
BspPI	GGATC	1 cut(s)	1370
BspT107I	GGYRCC	2 cut(s)	1012, 1303
BspTI	CTTAAG	1 cut(s)	1135
BspTNI	GGTCTC	1 cut(s)	685
BsrBI	CCGCTC	1 cut(s)	302
BsrDI	GCAATG	3 cut(s)	884, 954, 1325
BsrI	ACTGG	3 cut(s)	129, 604, 1437
BssECI	CCNNGG	2 cut(s)	75, 744
BssMI	GATC	3 cut(s)	483, 627, 1362
BssT1I	CCWWGG	2 cut(s)	75, 744
Bst2UI	CCWGG	3 cut(s)	214, 1071, 1301
Bst4CI	ACNGT	2 cut(s)	93, 559
BstAFI	CTTAAG	1 cut(s)	1135
BstAPI	GCANNNNNTGC	1 cut(s)	1040
BstC8I	GCNNGC	1 cut(s)	968
BstDEI	CTNAG	4 cut(s)	648, 1049, 1054, 1479
BstDSI	CCRYGG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	1276
BstF5I	GGATG	5 cut(s)	193, 314, 326, 589, 1427
BstKTI	GATC	3 cut(s)	486, 630, 1365
BstMAI	GTCTC	1 cut(s)	685
BstMBI	GATC	3 cut(s)	483, 627, 1362
BstMWI	GCNNNNNNNGC	5 cut(s)	299, 437, 895, 956, 1040
BstNI	CCWGG	3 cut(s)	214, 1071, 1301
BstPI	GGTNACC	1 cut(s)	1276
BstSCI	CCNGG	4 cut(s)	154, 212, 1069, 1299
BstSLI	GKGCMC	2 cut(s)	1000, 1017
BstV1I	GCAGC	6 cut(s)	85, 183, 364, 1045, 1472, 1475
BsuI	GTATCC	1 cut(s)	807
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	5 cut(s)	193, 314, 326, 589, 1427
BtsI	GCAGTG	1 cut(s)	1129
BtsIMutI	CAGTG	2 cut(s)	136, 1129
Cac8I	GCNNGC	1 cut(s)	968
CciI	TCATGA	1 cut(s)	624
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	6 cut(s)	81, 147, 225, 377, 603, 1189
CviQI	GTAC	6 cut(s)	81, 147, 225, 377, 603, 1189
DdeI	CTNAG	4 cut(s)	648, 1049, 1054, 1479
DpnI	GATC	3 cut(s)	485, 629, 1364
DpnII	GATC	3 cut(s)	483, 627, 1362
Eco130I	CCWWGG	2 cut(s)	75, 744
Eco31I	GGTCTC	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	55
Eco91I	GGTNACC	1 cut(s)	1276
EcoO65I	GGTNACC	1 cut(s)	1276
EcoRII	CCWGG	3 cut(s)	212, 1069, 1299
EcoT14I	CCWWGG	2 cut(s)	75, 744
ErhI	CCWWGG	2 cut(s)	75, 744
FaqI	GGGAC	3 cut(s)	280, 1428, 1443
FauNDI	CATATG	1 cut(s)	962
FbaI	TGATCA	1 cut(s)	627
Fnu4HI	GCNGC	7 cut(s)	99, 197, 300, 353, 1059, 1461, 1464
FokI	GGATG	5 cut(s)	200, 321, 333, 576, 1434
Fsp4HI	GCNGC	7 cut(s)	99, 197, 300, 353, 1059, 1461, 1464
FspBI	CTAG	6 cut(s)	104, 338, 455, 467, 977, 1513
GluI	GCNGC	7 cut(s)	99, 197, 300, 353, 1059, 1461, 1464
HapII	CCGG	2 cut(s)	155, 399
HinfI	GANTC	4 cut(s)	209, 268, 389, 788
HpaII	CCGG	2 cut(s)	155, 399
HphI	GGTGA	3 cut(s)	182, 946, 1288
Hpy166II	GTNNAC	2 cut(s)	173, 1191
Hpy188I	TCNGA	5 cut(s)	394, 813, 851, 895, 1482
Hpy188III	TCNNGA	5 cut(s)	258, 478, 625, 869, 1372
Hpy8I	GTNNAC	2 cut(s)	173, 1191
HpyAV	CCTTC	1 cut(s)	451
HpyCH4III	ACNGT	2 cut(s)	93, 559
HpyCH4IV	ACGT	3 cut(s)	239, 861, 1410
HpyCH4V	TGCA	9 cut(s)	134, 293, 347, 717, 1043, 1061, 1113, 1217, 1460
HpyF10VI	GCNNNNNNNGC	5 cut(s)	299, 437, 895, 956, 1040
HpyF3I	CTNAG	4 cut(s)	648, 1049, 1054, 1479
HpySE526I	ACGT	3 cut(s)	239, 861, 1410
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	3 cut(s)	483, 627, 1362
LmnI	GCTCC	2 cut(s)	375, 541
Lsp1109I	GCAGC	6 cut(s)	85, 183, 364, 1045, 1472, 1475
LweI	GCATC	2 cut(s)	178, 1412
MaeI	CTAG	6 cut(s)	104, 338, 455, 467, 977, 1513
MaeII	ACGT	3 cut(s)	239, 861, 1410
MaeIII	GTNAC	5 cut(s)	235, 333, 563, 854, 1276
MalI	GATC	3 cut(s)	485, 629, 1364
MbiI	CCGCTC	1 cut(s)	302
MboI	GATC	3 cut(s)	483, 627, 1362
MboII	GAAGA	5 cut(s)	152, 541, 1213, 1282, 1495
MfeI	CAATTG	2 cut(s)	705, 738
MhlI	GDGCHC	2 cut(s)	1000, 1017
MluCI	AATT	8 cut(s)	120, 261, 705, 738, 909, 1311, 1471, 1498
MlyI	GAGTC	2 cut(s)	262, 797
MmeI	TCCRAC	3 cut(s)	448, 535, 791
MseI	TTAA	4 cut(s)	66, 1136, 1394, 1407
MslI	CAYNNNNRTG	4 cut(s)	74, 113, 319, 629
MspA1I	CMGCKG	1 cut(s)	1058
MspCI	CTTAAG	1 cut(s)	1135
MspI	CCGG	2 cut(s)	155, 399
MspR9I	CCNGG	4 cut(s)	156, 214, 1071, 1301
MunI	CAATTG	2 cut(s)	705, 738
Mva1269I	GAATGC	5 cut(s)	293, 826, 845, 1113, 1262
MvaI	CCWGG	3 cut(s)	214, 1071, 1301
MwoI	GCNNNNNNNGC	5 cut(s)	299, 437, 895, 956, 1040
NciI	CCSGG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	962
NdeII	GATC	3 cut(s)	483, 627, 1362
NlaIV	GGNNCC	4 cut(s)	56, 371, 1014, 1305
NmuCI	GTSAC	3 cut(s)	235, 854, 1276
PagI	TCATGA	1 cut(s)	624
PctI	GAATGC	5 cut(s)	293, 826, 845, 1113, 1262
PfeI	GAWTC	2 cut(s)	209, 389
PflMI	CCANNNNNTGG	2 cut(s)	599, 675
PfoI	TCCNGGA	2 cut(s)	154, 212
PkrI	GCNGC	7 cut(s)	100, 198, 301, 354, 1060, 1462, 1465
PleI	GAGTC	2 cut(s)	262, 796
PpsI	GAGTC	2 cut(s)	262, 796
Psp6I	CCWGG	3 cut(s)	212, 1069, 1299
PspEI	GGTNACC	1 cut(s)	1276
PspGI	CCWGG	3 cut(s)	212, 1069, 1299
PspN4I	GGNNCC	4 cut(s)	56, 371, 1014, 1305
PspPI	GGNCC	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	1058
RsaI	GTAC	6 cut(s)	82, 148, 226, 378, 604, 1190
RsaNI	GTAC	6 cut(s)	81, 147, 225, 377, 603, 1189
RseI	CAYNNNNRTG	4 cut(s)	74, 113, 319, 629
SaqAI	TTAA	4 cut(s)	66, 1136, 1394, 1407
SatI	GCNGC	7 cut(s)	99, 197, 300, 353, 1059, 1461, 1464
Sau3AI	GATC	3 cut(s)	483, 627, 1362
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	2 cut(s)	262, 797
ScrFI	CCNGG	4 cut(s)	156, 214, 1071, 1301
SduI	GDGCHC	2 cut(s)	1000, 1017
SfaNI	GCATC	2 cut(s)	178, 1412
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	4 cut(s)	74, 113, 319, 629
SmlI	CTYRAG	4 cut(s)	270, 1087, 1135, 1370
SmoI	CTYRAG	4 cut(s)	270, 1087, 1135, 1370
Sse9I	AATT	8 cut(s)	120, 261, 705, 738, 909, 1311, 1471, 1498
SsiI	CCGC	3 cut(s)	72, 300, 1274
SspMI	CTAG	6 cut(s)	104, 338, 455, 467, 977, 1513
StyD4I	CCNGG	4 cut(s)	154, 212, 1069, 1299
StyI	CCWWGG	2 cut(s)	75, 744
TaaI	ACNGT	2 cut(s)	93, 559
TaiI	ACGT	3 cut(s)	242, 864, 1413
TaqI	TCGA	2 cut(s)	177, 1228
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	8 cut(s)	120, 261, 705, 738, 909, 1311, 1471, 1498
TatI	WGTACW	2 cut(s)	376, 1188
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	2 cut(s)	209, 389
Tru1I	TTAA	4 cut(s)	66, 1136, 1394, 1407
Tru9I	TTAA	4 cut(s)	66, 1136, 1394, 1407
TscAI	CASTG	2 cut(s)	136, 1136
TseFI	GTSAC	3 cut(s)	235, 854, 1276
TseI	GCWGC	6 cut(s)	98, 196, 352, 1058, 1460, 1463
Tsp45I	GTSAC	3 cut(s)	235, 854, 1276
TspDTI	ATGAA	5 cut(s)	233, 613, 902, 1199, 1345
TspGWI	ACGGA	4 cut(s)	223, 1229, 1275, 1338
TspRI	CASTG	2 cut(s)	136, 1136
Van91I	CCANNNNNTGG	2 cut(s)	599, 675
Vha464I	CTTAAG	1 cut(s)	1135
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	1 cut(s)	1471
XspI	CTAG	6 cut(s)	104, 338, 455, 467, 977, 1513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.