Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007006

Physical Location & Seq

Genomic Coordinates Reverse (-)

56467121 .. 56471616

Gene Structure 4496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26377

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAGTAGCCGTGCCAGCAGAACTCTTTATGTCGGGAACCTCCCCGGTGATATACGCGAGAGAGAGGTGGAAGATTTGTTTTACAAGTATGGACGCATTGCCCACATTGACCTCAAGGTGCCCCCAAGGCCTCCTGGTTATGCATTTGTTGAGTTTGAAGATGCTCGTGATGCTGAAGATGCAATCCGCGGCCGTGATGGCTATGATTTTGATGGCAATCGCTTGAGGGTTGAACTTGCGCATGGTGGCCGTGGACATTCTTCTGGGGGAGATCGTCATAGAGATAGTGGTGGTGGTGGTGGTGGTGGTCGAGGTGGACGTGGAATGTCTAGGCGCTCCGATTATCGTGTGTTAGTCAGTGGACTACCCTCTTCAGCTTCATGGCAAGATCTTAAGGATCACATGCGACGGGCTGGGGATGTCTGTTTCTCCCAAGTTTTCCGTGATGGTAGTGGCACAACAGGAGTAGTGGACTACACTAACTATGAAGACATGAAGTATGCAATAAAAAAGCTTGATGGCTCTGACTTCAGGAATGCTTTTTCCCGGTCTTCTGTTCGGGTGAGAGAATATGATGCGAAGCGGGACTCGTCTATGAGCCCCGGTCGTGGTCGATCTCATTCAAGAGGTAGAAGCTACAGTCGCAGTCGTAGTAGAAGTTATAGCCGGAGCAGAAGCAGGAGCAAGTCTCCTAAACCTAAATCTTCACGCCGCTCGCCTGGTAGATCTCGATCAAGGTCTGGGTCTCCACCCCGCTCACGATCAAAGTCTCGCTCCCCGTCAGGATCACGATCAAGAAGCAGATCTCCACTGCCTTCAAAGCGCATAAGTAAAAGCCCGAAGAAAGACACAAGTAAAAGTCCGAAGAAGCGCAGTGCCAGCCGAAGTCCAAGCAGGAGCAGGAGCAAGAGTTTGTCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

Ndufs5 RRM_1

Protein Analysis

307

Amino Acids

34.15

Weight (kDa)

11.32

Isoelectric Point (pI)

101.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	2.9e-18	RNA recognition motif
RRM_1	PF00076	117 - 179	3e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT4G02430 AT4G02430 AT4G02430 AT4G02430
fragaria_vesca	FvH4_2g25670 FvH4_2g25670 FvH4_2g25670
malus_domestica	MD03G1287500.v1.1 MD11G1310700.v1.1
prunus_persica	Prupe.8G260600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293931
rosa_laevigata	RLG00000011915
rosa_multiflora	Rmu_sc0005647.1_g000008
rosa_roxburghii	Rroxscaffold_7G00173830
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6AG352500 Rh6BG359300 Rh6CG366600 Rh6DG352900
rosa_wichuraiana	Rw6G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	118
AccBSI	CCGCTC	2 cut(s)	714, 756
AccII	CGCG	2 cut(s)	57, 189
AciI	CCGC	5 cut(s)	187, 189, 583, 712, 754
AclWI	GGATC	2 cut(s)	405, 793
AcoI	YGGCCR	2 cut(s)	190, 247
AcuI	CTGAAG	3 cut(s)	195, 357, 514
AfiI	CCNNNNNNNGG	1 cut(s)	608
AflII	CTTAAG	1 cut(s)	392
AgsI	TTSAA	4 cut(s)	158, 233, 624, 819
AjiI	CACGTC	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	133, 718
AluBI	AGCT	3 cut(s)	377, 514, 636
AluI	AGCT	3 cut(s)	377, 514, 636
Alw26I	GTCTC	3 cut(s)	693, 750, 774
AlwI	GGATC	2 cut(s)	405, 793
AoxI	GGCC	3 cut(s)	128, 190, 247
AspLEI	GCGC	4 cut(s)	241, 336, 825, 873
AsuC2I	CCSGG	3 cut(s)	45, 547, 603
AsuHPI	GGTGA	2 cut(s)	59, 574
BaeGI	GKGCMC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	602
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	2 cut(s)	495, 543
BccI	CCATC	4 cut(s)	191, 206, 440, 512
BceAI	ACGGC	2 cut(s)	177, 234
BciT130I	CCWGG	2 cut(s)	135, 720
BcnI	CCSGG	3 cut(s)	45, 547, 603
BcoDI	GTCTC	3 cut(s)	693, 750, 774
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	637
BfoI	RGCGCY	1 cut(s)	337
BfrI	CTTAAG	1 cut(s)	392
BglI	GCCNNNNNGGC	2 cut(s)	127, 198
BglII	AGATCT	3 cut(s)	388, 725, 803
BisI	GCNGC	2 cut(s)	190, 712
BlsI	GCNGC	2 cut(s)	191, 713
Bme1390I	CCNGG	5 cut(s)	45, 135, 547, 603, 720
BmgBI	CACGTC	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	38, 120
BmrFI	CCNGG	5 cut(s)	45, 135, 547, 603, 720
BmsI	GCATC	4 cut(s)	151, 160, 169, 565
BpiI	GAAGAC	2 cut(s)	495, 543
BplI	GAGNNNNNCTC	2 cut(s)	673, 705
BpuEI	CTTGAG	2 cut(s)	98, 244
BpuMI	CCSGG	3 cut(s)	45, 547, 603
BsaBI	GATNNNNATC	3 cut(s)	216, 730, 790
BsaI	GGTCTC	1 cut(s)	750
BsaJI	CCNNGG	5 cut(s)	43, 125, 187, 250, 601
BsaXI	ACNNNNNCTCC	1 cut(s)	895
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse3DI	GCAATG	1 cut(s)	96
Bse8I	GATNNNNATC	3 cut(s)	216, 730, 790
BseBI	CCWGG	2 cut(s)	135, 720
BseDI	CCNNGG	5 cut(s)	43, 125, 187, 250, 601
BseGI	GGATG	1 cut(s)	424
BseJI	GATNNNNATC	3 cut(s)	216, 730, 790
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMI	GCAATG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	123
BseX3I	CGGCCG	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	413
Bsh1236I	CGCG	2 cut(s)	57, 189
Bsh1285I	CGRYCG	2 cut(s)	193, 607
BshFI	GGCC	3 cut(s)	130, 192, 249
BshNI	GGYRCC	1 cut(s)	118
BsiEI	CGRYCG	2 cut(s)	193, 607
BsiSI	CCGG	4 cut(s)	45, 547, 603, 667
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmAI	GTCTC	3 cut(s)	693, 750, 774
BsmFI	GGGAC	1 cut(s)	599
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	3 cut(s)	130, 192, 249
Bso31I	GGTCTC	1 cut(s)	750
Bsp1286I	GDGCHC	2 cut(s)	123, 602
BspACI	CCGC	5 cut(s)	187, 189, 583, 712, 754
BspANI	GGCC	3 cut(s)	130, 192, 249
BspFNI	CGCG	2 cut(s)	57, 189
BspLI	GGNNCC	2 cut(s)	38, 120
BspPI	GGATC	2 cut(s)	405, 793
BspT107I	GGYRCC	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	750
BsrBI	CCGCTC	2 cut(s)	714, 756
BsrDI	GCAATG	1 cut(s)	96
BssECI	CCNNGG	5 cut(s)	43, 125, 187, 250, 601
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	135, 720
Bst4CI	ACNGT	2 cut(s)	641, 921
Bst6I	CTCTTC	1 cut(s)	376
BstAFI	CTTAAG	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	16, 716, 880
BstDSI	CCRYGG	2 cut(s)	187, 250
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	2 cut(s)	57, 189
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	4 cut(s)	241, 336, 825, 873
BstMAI	GTCTC	3 cut(s)	693, 750, 774
BstMCI	CGRYCG	2 cut(s)	193, 607
BstMWI	GCNNNNNNNGC	8 cut(s)	15, 127, 170, 179, 198, 642, 820, 879
BstNI	CCWGG	2 cut(s)	135, 720
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	5 cut(s)	43, 133, 545, 601, 718
BstSFI	CTRYAG	1 cut(s)	637
BstSLI	GKGCMC	1 cut(s)	123
BstUI	CGCG	2 cut(s)	57, 189
BstV2I	GAAGAC	2 cut(s)	495, 543
BstX2I	RGATCY	3 cut(s)	388, 725, 803
BstYI	RGATCY	3 cut(s)	388, 725, 803
BstZI	CGGCCG	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	130, 192, 249
BtgI	CCRYGG	2 cut(s)	187, 250
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	2 cut(s)	809, 880
BtsIMutI	CAGTG	3 cut(s)	364, 809, 880
Cac8I	GCNNGC	3 cut(s)	16, 716, 880
CfoI	GCGC	4 cut(s)	241, 336, 825, 873
Cfr42I	CCGCGG	1 cut(s)	190
CseI	GACGC	1 cut(s)	102
CviAII	CATG	4 cut(s)	242, 381, 403, 493
EaeI	YGGCCR	2 cut(s)	190, 247
EagI	CGGCCG	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
EclXI	CGGCCG	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	125
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	602
Eco31I	GGTCTC	1 cut(s)	750
Eco52I	CGGCCG	1 cut(s)	190
Eco57I	CTGAAG	3 cut(s)	195, 357, 514
EcoRII	CCWGG	2 cut(s)	133, 718
EcoT14I	CCWWGG	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	4 cut(s)	245, 384, 406, 496
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	4 cut(s)	241, 380, 402, 492
FauI	CCCGC	2 cut(s)	576, 761
Fnu4HI	GCNGC	2 cut(s)	190, 712
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	2 cut(s)	190, 712
FspBI	CTAG	1 cut(s)	330
FspI	TGCGCA	1 cut(s)	240
GlaI	GCGC	4 cut(s)	240, 335, 824, 872
GluI	GCNGC	2 cut(s)	190, 712
GsaI	CCCAGC	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	3 cut(s)	130, 192, 249
HapII	CCGG	4 cut(s)	45, 547, 603, 667
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	4 cut(s)	241, 336, 825, 873
Hin1II	CATG	4 cut(s)	245, 384, 406, 496
Hin6I	GCGC	4 cut(s)	239, 334, 823, 871
HinP1I	GCGC	4 cut(s)	239, 334, 823, 871
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	1 cut(s)	587
HpaII	CCGG	4 cut(s)	45, 547, 603, 667
HphI	GGTGA	2 cut(s)	59, 574
Hpy166II	GTNNAC	4 cut(s)	254, 317, 362, 472
Hpy188I	TCNGA	3 cut(s)	340, 526, 864
Hpy188III	TCNNGA	9 cut(s)	34, 167, 532, 624, 729, 759, 783, 789, 795
Hpy8I	GTNNAC	4 cut(s)	254, 317, 362, 472
Hpy99I	CGWCG	1 cut(s)	411
HpyAV	CCTTC	1 cut(s)	825
HpyCH4III	ACNGT	2 cut(s)	641, 921
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	3 cut(s)	143, 182, 503
HpyF10VI	GCNNNNNNNGC	8 cut(s)	15, 127, 170, 179, 198, 642, 820, 879
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	4 cut(s)	245, 384, 406, 496
HspAI	GCGC	4 cut(s)	239, 334, 823, 871
KspI	CCGCGG	1 cut(s)	190
LmnI	GCTCC	6 cut(s)	341, 669, 681, 779, 897, 903
LweI	GCATC	4 cut(s)	151, 160, 169, 565
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	915
MbiI	CCGCTC	2 cut(s)	714, 756
MflI	RGATCY	3 cut(s)	388, 725, 803
MhlI	GDGCHC	2 cut(s)	123, 602
MlyI	GAGTC	1 cut(s)	581
MnlI	CCTC	8 cut(s)	50, 58, 122, 141, 219, 305, 379, 620
Mph1103I	ATGCAT	1 cut(s)	145
MseI	TTAA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	4 cut(s)	45, 547, 603, 667
MspR9I	CCNGG	5 cut(s)	45, 135, 547, 603, 720
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	2 cut(s)	135, 720
MvnI	CGCG	2 cut(s)	57, 189
MwoI	GCNNNNNNNGC	8 cut(s)	15, 127, 170, 179, 198, 642, 820, 879
NciI	CCSGG	3 cut(s)	45, 547, 603
NlaIII	CATG	4 cut(s)	245, 384, 406, 496
NlaIV	GGNNCC	2 cut(s)	38, 120
NmuCI	GTSAC	1 cut(s)	915
NsbI	TGCGCA	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	1 cut(s)	406
PceI	AGGCCT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	316
PctI	GAATGC	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	191, 713
PleI	GAGTC	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	581
Psp6I	CCWGG	2 cut(s)	133, 718
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	2 cut(s)	133, 718
PspN4I	GGNNCC	2 cut(s)	38, 120
PsuI	RGATCY	3 cut(s)	388, 725, 803
SacII	CCGCGG	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	2 cut(s)	190, 712
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	5 cut(s)	45, 135, 547, 603, 720
SduI	GDGCHC	2 cut(s)	123, 602
SfaNI	GCATC	4 cut(s)	151, 160, 169, 565
SfcI	CTRYAG	1 cut(s)	637
Sfr303I	CCGCGG	1 cut(s)	190
SgrBI	CCGCGG	1 cut(s)	190
SmlI	CTYRAG	3 cut(s)	113, 223, 392
SmoI	CTYRAG	3 cut(s)	113, 223, 392
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	5 cut(s)	187, 189, 583, 712, 754
SspMI	CTAG	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	5 cut(s)	43, 133, 545, 601, 718
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	641, 921
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	3 cut(s)	310, 613, 730
TauI	GCSGC	2 cut(s)	192, 714
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	3 cut(s)	364, 816, 880
TseFI	GTSAC	1 cut(s)	915
Tsp45I	GTSAC	1 cut(s)	915
TspDTI	ATGAA	3 cut(s)	369, 501, 509
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	3 cut(s)	364, 816, 880
Vha464I	CTTAAG	1 cut(s)	392
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	1 cut(s)	330
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.