Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007006

Physical Location & Seq

Genomic Coordinates Forward (+)

42352185 .. 42356847

Gene Structure 4663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1310700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAATACAATGAGCAGTCGTAGTACGAGCAGAACTCTCTATGTTGGGAATCTGCCCGGTGATGTACGCGAGAGAGAGGTGGAAGACTTGTTTTTCAAGTATGGACGCATAGCCCATATTGACCTGAAGGTCCCTCCAAGGCCTCCTGGTTATGCATTTGTTGAGTTTGAAGACTCTCGTGATGCTGAAGATGCACTCCGTGGTCGTGATGGCTATGATTTTGATGGGCATCGTTTACGGGTTGAACTTGCACATGGAGGGCGTGGGCATTCATCTTCTTCAGATCGTCAGAGTAACTATAGTGGTGGTCGAGGTGGACGTGGGATGTCTAAGCGCTCAGATTATCGTGTGTTAGTCAGTGAACTTCCCCCTTCCGCTTCATGGCAAGATCTTAAGGATCACATGCGACGGGCAGGAGATGTCTGTTTCTCCCAAGTTTTTCGTGATGGTAGTGGCACAACTGGGATTGTGGATTACACGAACTTAGAAGATATGAAGTATGCGATCAAAAAGCTTGATGGCTCTGAGTTCCGGAATGCTTTTGACCGCCAATCTGTTCGTGTGAGGGAATATGATGCGAAGAGGGACTCATCTAGGAGCCCTAGTCGCGGTCGATCTCGTTCAAAAGGCAGGAGCTACAGTCGCAGTCGTAGTCCAAGTTATAGCCGGGACAGAAGCAGGAGCAAGTCTCCAAAAACCAAATCTTCACGCCGCTCACCCGCTAGATCTCGATCAAGATCGGCTTCTCTCCCCGGTTCACGATCAAGGTCTCGCTCTCCATCAGAGTATGGGTTATTTTTATATTTCCAAATAGTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

Ndufs5 RRM_1

Protein Analysis

274

Amino Acids

30.98

Weight (kDa)

10.41

Isoelectric Point (pI)

88.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	13 - 80	4.3e-18	RNA recognition motif
RRM_1	PF00076	117 - 179	1.8e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT4G02430 AT4G02430 AT4G02430 AT4G02430
fragaria_vesca	FvH4_2g25670 FvH4_2g25670 FvH4_2g25670
malus_domestica	MD03G1287500.v1.1 MD11G1310700.v1.1
prunus_persica	Prupe.8G260600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293931
rosa_laevigata	RLG00000011915
rosa_multiflora	Rmu_sc0005647.1_g000008
rosa_roxburghii	Rroxscaffold_7G00173830
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6AG352500 Rh6BG359300 Rh6CG366600 Rh6DG352900
rosa_wichuraiana	Rw6G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccBSI	CCGCTC	1 cut(s)	714
AccII	CGCG	2 cut(s)	69, 609
AccIII	TCCGGA	1 cut(s)	531
AciI	CCGC	5 cut(s)	375, 547, 609, 712, 720
AclWI	GGATC	1 cut(s)	405
AcuI	CTGAAG	3 cut(s)	146, 207, 264
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	2 cut(s)	25, 66
AfeI	AGCGCT	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	381, 608
AflII	CTTAAG	1 cut(s)	392
AgsI	TTSAA	4 cut(s)	97, 170, 245, 624
AjiI	CACGTC	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	2 cut(s)	514, 636
AluI	AGCT	2 cut(s)	514, 636
Alw26I	GTCTC	2 cut(s)	693, 774
AlwI	GGATC	1 cut(s)	405
Aor13HI	TCCGGA	1 cut(s)	531
Aor51HI	AGCGCT	1 cut(s)	335
AoxI	GGCC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	130
AsuC2I	CCSGG	3 cut(s)	57, 668, 753
AsuHPI	GGTGA	2 cut(s)	71, 708
AvaII	GGWCC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	602
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	2 cut(s)	90, 177
BccI	CCATC	5 cut(s)	203, 218, 440, 512, 787
BciT130I	CCWGG	1 cut(s)	147
BcnI	CCSGG	3 cut(s)	57, 668, 753
BcoDI	GTCTC	2 cut(s)	693, 774
BfaI	CTAG	3 cut(s)	594, 603, 723
BfmI	CTRYAG	2 cut(s)	298, 637
BfoI	RGCGCY	1 cut(s)	337
BfrI	CTTAAG	1 cut(s)	392
BglII	AGATCT	2 cut(s)	388, 725
BisI	GCNGC	1 cut(s)	712
BlsI	GCNGC	1 cut(s)	713
Bme1390I	CCNGG	4 cut(s)	57, 147, 668, 753
Bme18I	GGWCC	1 cut(s)	130
BmgBI	CACGTC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	132, 599
BmrFI	CCNGG	4 cut(s)	57, 147, 668, 753
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	4 cut(s)	172, 181, 238, 565
BmuI	ACTGGG	1 cut(s)	471
BpiI	GAAGAC	2 cut(s)	90, 177
BplI	GAGNNNNNCTC	4 cut(s)	19, 51, 673, 705
BpuMI	CCSGG	3 cut(s)	57, 668, 753
BsaBI	GATNNNNATC	3 cut(s)	228, 730, 736
BsaI	GGTCTC	1 cut(s)	774
BsaJI	CCNNGG	3 cut(s)	137, 199, 751
BsaWI	WCCGGW	1 cut(s)	531
BsaXI	ACNNNNNCTCC	4 cut(s)	589, 619, 625, 655
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 608
Bse1I	ACTGG	1 cut(s)	466
Bse8I	GATNNNNATC	3 cut(s)	228, 730, 736
BseAI	TCCGGA	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	3 cut(s)	137, 199, 751
BseGI	GGATG	1 cut(s)	330
BseJI	GATNNNNATC	3 cut(s)	228, 730, 736
BseLI	CCNNNNNNNGG	2 cut(s)	381, 608
BseMII	CTCAG	2 cut(s)	351, 516
BseNI	ACTGG	1 cut(s)	466
Bsh1236I	CGCG	2 cut(s)	69, 609
Bsh1285I	CGRYCG	1 cut(s)	613
BshFI	GGCC	1 cut(s)	142
BsiEI	CGRYCG	1 cut(s)	613
BsiSI	CCGG	4 cut(s)	57, 532, 667, 753
BslFI	GGGAC	3 cut(s)	116, 599, 683
BslI	CCNNNNNNNGG	2 cut(s)	381, 608
BsmAI	GTCTC	2 cut(s)	693, 774
BsmFI	GGGAC	3 cut(s)	116, 599, 683
BsmI	GAATGC	2 cut(s)	268, 541
BsnI	GGCC	1 cut(s)	142
Bso31I	GGTCTC	1 cut(s)	774
Bsp1286I	GDGCHC	1 cut(s)	602
Bsp13I	TCCGGA	1 cut(s)	531
Bsp143I	GATC	9 cut(s)	283, 388, 397, 504, 614, 725, 731, 737, 761
BspACI	CCGC	5 cut(s)	375, 547, 609, 712, 720
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	2 cut(s)	350, 517
BspEI	TCCGGA	1 cut(s)	531
BspFNI	CGCG	2 cut(s)	69, 609
BspLI	GGNNCC	2 cut(s)	132, 599
BspPI	GGATC	1 cut(s)	405
BspTI	CTTAAG	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	774
BsrBI	CCGCTC	1 cut(s)	714
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	3 cut(s)	137, 199, 751
BssMI	GATC	9 cut(s)	283, 388, 397, 504, 614, 725, 731, 737, 761
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	641
Bst6I	CTCTTC	1 cut(s)	575
BstAFI	CTTAAG	1 cut(s)	392
BstDEI	CTNAG	4 cut(s)	330, 337, 484, 525
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	2 cut(s)	69, 609
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	9 cut(s)	286, 391, 400, 507, 617, 728, 734, 740, 764
BstMAI	GTCTC	2 cut(s)	693, 774
BstMBI	GATC	9 cut(s)	283, 388, 397, 504, 614, 725, 731, 737, 761
BstMCI	CGRYCG	1 cut(s)	613
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 606, 642
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	4 cut(s)	55, 145, 666, 751
BstSFI	CTRYAG	2 cut(s)	298, 637
BstUI	CGCG	2 cut(s)	69, 609
BstV2I	GAAGAC	2 cut(s)	90, 177
BstX2I	RGATCY	2 cut(s)	388, 725
BstYI	RGATCY	2 cut(s)	388, 725
BsuRI	GGCC	1 cut(s)	142
BtgI	CCRYGG	1 cut(s)	199
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	364
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	130
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	24, 65
CviAII	CATG	3 cut(s)	254, 381, 403
CviJI	RGCY	9 cut(s)	113, 142, 213, 514, 522, 600, 636, 666, 743
CviKI_1	RGCY	9 cut(s)	113, 142, 213, 514, 522, 600, 636, 666, 743
CviQI	GTAC	2 cut(s)	24, 65
DdeI	CTNAG	4 cut(s)	330, 337, 484, 525
DpnI	GATC	9 cut(s)	285, 390, 399, 506, 616, 727, 733, 739, 763
DpnII	GATC	9 cut(s)	283, 388, 397, 504, 614, 725, 731, 737, 761
DraIII	CACNNNGTG	1 cut(s)	200
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	575
EarI	CTCTTC	1 cut(s)	575
Eco130I	CCWWGG	1 cut(s)	137
Eco147I	AGGCCT	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	602
Eco31I	GGTCTC	1 cut(s)	774
Eco47I	GGWCC	1 cut(s)	130
Eco47III	AGCGCT	1 cut(s)	335
Eco57I	CTGAAG	3 cut(s)	146, 207, 264
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	3 cut(s)	257, 384, 406
FalI	AAGNNNNNCTT	2 cut(s)	727, 759
FaqI	GGGAC	3 cut(s)	116, 599, 683
FatI	CATG	3 cut(s)	253, 380, 402
FauI	CCCGC	1 cut(s)	727
Fnu4HI	GCNGC	1 cut(s)	712
FokI	GGATG	1 cut(s)	337
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	1 cut(s)	712
FspBI	CTAG	3 cut(s)	594, 603, 723
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	1 cut(s)	712
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	4 cut(s)	57, 532, 667, 753
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	3 cut(s)	257, 384, 406
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	3 cut(s)	49, 173, 587
HpaII	CCGG	4 cut(s)	57, 532, 667, 753
HphI	GGTGA	2 cut(s)	71, 708
Hpy166II	GTNNAC	4 cut(s)	236, 317, 362, 758
Hpy188I	TCNGA	5 cut(s)	283, 291, 340, 526, 784
Hpy188III	TCNNGA	7 cut(s)	179, 206, 443, 532, 729, 735, 759
Hpy8I	GTNNAC	4 cut(s)	236, 317, 362, 758
Hpy99I	CGWCG	1 cut(s)	411
HpyAV	CCTTC	2 cut(s)	121, 381
HpyCH4III	ACNGT	1 cut(s)	641
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	3 cut(s)	155, 194, 251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 606, 642
HpyF3I	CTNAG	4 cut(s)	330, 337, 484, 525
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	3 cut(s)	257, 384, 406
HspAI	GCGC	1 cut(s)	334
Kpn2I	TCCGGA	1 cut(s)	531
Kzo9I	GATC	9 cut(s)	283, 388, 397, 504, 614, 725, 731, 737, 761
LmnI	GCTCC	3 cut(s)	597, 633, 681
LweI	GCATC	4 cut(s)	172, 181, 238, 565
MaeI	CTAG	3 cut(s)	594, 603, 723
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	9 cut(s)	285, 390, 399, 506, 616, 727, 733, 739, 763
MbiI	CCGCTC	1 cut(s)	714
MboI	GATC	9 cut(s)	283, 388, 397, 504, 614, 725, 731, 737, 761
MboII	GAAGA	8 cut(s)	95, 182, 200, 267, 270, 500, 592, 696
MflI	RGATCY	2 cut(s)	388, 725
MhlI	GDGCHC	1 cut(s)	602
MlyI	GAGTC	2 cut(s)	167, 581
MnlI	CCTC	7 cut(s)	70, 144, 153, 251, 305, 558, 576
Mph1103I	ATGCAT	1 cut(s)	157
MroI	TCCGGA	1 cut(s)	531
MseI	TTAA	1 cut(s)	393
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	4 cut(s)	57, 532, 667, 753
MspR9I	CCNGG	4 cut(s)	57, 147, 668, 753
Mva1269I	GAATGC	2 cut(s)	268, 541
MvaI	CCWGG	1 cut(s)	147
MvnI	CGCG	2 cut(s)	69, 609
MwoI	GCNNNNNNNGC	3 cut(s)	191, 606, 642
NciI	CCSGG	3 cut(s)	57, 668, 753
NdeII	GATC	9 cut(s)	283, 388, 397, 504, 614, 725, 731, 737, 761
NlaIII	CATG	3 cut(s)	257, 384, 406
NlaIV	GGNNCC	2 cut(s)	132, 599
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	1 cut(s)	406
PceI	AGGCCT	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	316
PctI	GAATGC	2 cut(s)	268, 541
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	713
PleI	GAGTC	2 cut(s)	167, 581
PpsI	GAGTC	2 cut(s)	167, 581
PpuMI	RGGWCCY	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	132, 599
PspPI	GGNCC	1 cut(s)	130
PspPPI	RGGWCCY	1 cut(s)	130
PsuI	RGATCY	2 cut(s)	388, 725
RsaI	GTAC	2 cut(s)	25, 66
RsaNI	GTAC	2 cut(s)	24, 65
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	1 cut(s)	712
Sau3AI	GATC	9 cut(s)	283, 388, 397, 504, 614, 725, 731, 737, 761
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	2 cut(s)	167, 581
ScrFI	CCNGG	4 cut(s)	57, 147, 668, 753
SduI	GDGCHC	1 cut(s)	602
SetI	ASST	8 cut(s)	81, 126, 132, 316, 322, 516, 638, 770
SfaNI	GCATC	4 cut(s)	172, 181, 238, 565
SfcI	CTRYAG	2 cut(s)	298, 637
SinI	GGWCC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
SseBI	AGGCCT	1 cut(s)	142
SsiI	CCGC	5 cut(s)	375, 547, 609, 712, 720
SspMI	CTAG	3 cut(s)	594, 603, 723
StuI	AGGCCT	1 cut(s)	142
StyD4I	CCNGG	4 cut(s)	55, 145, 666, 751
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	641
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	3 cut(s)	310, 613, 730
TauI	GCSGC	1 cut(s)	714
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	1 cut(s)	364
TspDTI	ATGAA	4 cut(s)	17, 261, 369, 509
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	364
Vha464I	CTTAAG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	130
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	3 cut(s)	594, 603, 723
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.