Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007006

Physical Location & Seq

Genomic Coordinates Forward (+)

1068974 .. 1072263

Gene Structure 3290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAGCAGCCGTTCGAGTAGAACGATTTACGTCGGGAACCTTCCCGGCGATATCCGTGAAAGAGAAGTTGAAGACTTGTTCAGTAAGTATGGACCTGTTGTTCAAATCGATTTGAAGATTCCGCCGAGGCCTCCAGGCTATGCATTCGTCGAGTTTGAGGATGCTCGTGATGCTGATGATGCAATTTATGGCCGTGATGGTTATGACTTTGATGGGCATCATTTACGGGTGGAACTAGCTCATGGTGGGAGGCGTTCATCACATGATGCACGCGGTAGTTATAGTGGTCGTGGTCGTGGCGGTCGTGGTGGTGGTGACGGTGGTGGTCGTGAACGTGGACCATCTAGGAGATCAGAGTACCGCGTTGTAGTGTCAGGTTTGCCTTCATCTGCGTCCTGGCAAGACCTCAAGGATCACATGCGTAAAGGAGGAGAAGTTTGTTTTTCTCAAGTGTTTCGTGATGGTAGAGGTACAACTGGAATTGTAGATTATACCAGCTACGAGGACATGAAATATGCGATAAAAAAAGCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

Ndufs5 RRM_1

Protein Analysis

178

Amino Acids

19.75

Weight (kDa)

8.99

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	24 - 73	1.4e-09	RNA recognition motif
RRM_1	PF00076	120 - 174	1e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT4G02430 AT4G02430 AT4G02430 AT4G02430
fragaria_vesca	FvH4_2g25670 FvH4_2g25670 FvH4_2g25670
malus_domestica	MD03G1287500.v1.1 MD11G1310700.v1.1
prunus_persica	Prupe.8G260600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293931
rosa_laevigata	RLG00000011915
rosa_multiflora	Rmu_sc0005647.1_g000008
rosa_roxburghii	Rroxscaffold_7G00173830
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6AG352500 Rh6BG359300 Rh6CG366600 Rh6DG352900
rosa_wichuraiana	Rw6G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	273, 363
AciI	CCGC	4 cut(s)	122, 273, 300, 361
AclWI	GGATC	1 cut(s)	420
AcoI	YGGCCR	1 cut(s)	190
AfaI	GTAC	2 cut(s)	359, 472
AgsI	TTSAA	3 cut(s)	71, 104, 115
AjnI	CCWGG	2 cut(s)	133, 395
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	3 cut(s)	239, 498, 530
AluI	AGCT	3 cut(s)	239, 498, 530
AlwI	GGATC	1 cut(s)	420
AoxI	GGCC	2 cut(s)	128, 190
ApeKI	GCWGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	92, 338
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	92, 338
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	4 cut(s)	191, 206, 349, 455
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	2 cut(s)	135, 397
BcnI	CCSGG	1 cut(s)	45
BfaI	CTAG	2 cut(s)	236, 345
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	3 cut(s)	45, 135, 397
Bme18I	GGWCC	2 cut(s)	92, 338
BmgT120I	GGNCC	2 cut(s)	92, 338
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	3 cut(s)	45, 135, 397
BmsI	GCATC	5 cut(s)	151, 160, 169, 226, 256
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	117
BpuEI	CTTGAG	2 cut(s)	392, 432
BpuMI	CCSGG	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bse1I	ACTGG	1 cut(s)	481
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	135, 397
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	1 cut(s)	166
BseJI	GATNNNNATC	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	18
Bsh1236I	CGCG	2 cut(s)	273, 363
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	130, 192
BshVI	ATCGAT	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	130, 192
Bsp143I	GATC	2 cut(s)	350, 412
BspACI	CCGC	4 cut(s)	122, 273, 300, 361
BspANI	GGCC	2 cut(s)	130, 192
BspDI	ATCGAT	1 cut(s)	108
BspFNI	CGCG	2 cut(s)	273, 363
BspLI	GGNNCC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	2 cut(s)	350, 412
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	135, 397
Bst4CI	ACNGT	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	2 cut(s)	273, 363
BstKTI	GATC	2 cut(s)	353, 415
BstMBI	GATC	2 cut(s)	350, 412
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 179
BstNI	CCWGG	2 cut(s)	135, 397
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	3 cut(s)	43, 133, 395
BstUI	CGCG	2 cut(s)	273, 363
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	130, 192
BsuTUI	ATCGAT	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	92, 338
ClaI	ATCGAT	1 cut(s)	108
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	2 cut(s)	358, 471
CviAII	CATG	4 cut(s)	242, 263, 418, 508
CviJI	RGCY	7 cut(s)	9, 130, 138, 192, 239, 498, 530
CviKI_1	RGCY	7 cut(s)	9, 130, 138, 192, 239, 498, 530
CviQI	GTAC	2 cut(s)	358, 471
DpnI	GATC	2 cut(s)	352, 414
DpnII	GATC	2 cut(s)	350, 412
EaeI	YGGCCR	1 cut(s)	190
EciI	GGCGGA	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	2 cut(s)	92, 338
EcoRII	CCWGG	2 cut(s)	133, 395
EcoRV	GATATC	1 cut(s)	52
EcoT22I	ATGCAT	1 cut(s)	145
FaeI	CATG	4 cut(s)	245, 266, 421, 511
FatI	CATG	4 cut(s)	241, 262, 417, 507
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	2 cut(s)	236, 345
GluI	GCNGC	1 cut(s)	7
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	130, 192
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	381
Hin1II	CATG	4 cut(s)	245, 266, 421, 511
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	332, 338
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	4 cut(s)	34, 167, 329, 458
Hpy8I	GTNNAC	2 cut(s)	332, 338
Hpy99I	CGWCG	2 cut(s)	35, 152
HpyAV	CCTTC	2 cut(s)	50, 393
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	2 cut(s)	30, 334
HpyCH4V	TGCA	3 cut(s)	143, 182, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 179
HpySE526I	ACGT	2 cut(s)	30, 334
Hsp92II	CATG	4 cut(s)	245, 266, 421, 511
Kzo9I	GATC	2 cut(s)	350, 412
LpnPI	CCDG	9 cut(s)	58, 108, 120, 147, 360, 382, 409, 462, 508
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	5 cut(s)	151, 160, 169, 226, 256
MaeI	CTAG	2 cut(s)	236, 345
MaeII	ACGT	2 cut(s)	30, 334
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	2 cut(s)	352, 414
MboI	GATC	2 cut(s)	350, 412
MboII	GAAGA	2 cut(s)	83, 127
MluCI	AATT	2 cut(s)	183, 480
MnlI	CCTC	8 cut(s)	120, 141, 151, 243, 416, 422, 461, 496
Mph1103I	ATGCAT	1 cut(s)	145
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	3 cut(s)	45, 135, 397
Mva1269I	GAATGC	1 cut(s)	143
MvaI	CCWGG	2 cut(s)	135, 397
MvnI	CGCG	2 cut(s)	273, 363
MwoI	GCNNNNNNNGC	2 cut(s)	170, 179
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	350, 412
NlaIII	CATG	4 cut(s)	245, 266, 421, 511
NlaIV	GGNNCC	1 cut(s)	38
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	314
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	1 cut(s)	421
PceI	AGGCCT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 301
PctI	GAATGC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	133, 395
PspGI	CCWGG	2 cut(s)	133, 395
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	2 cut(s)	92, 338
RsaI	GTAC	2 cut(s)	359, 472
RsaNI	GTAC	2 cut(s)	358, 471
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	2 cut(s)	350, 412
Sau96I	GGNCC	2 cut(s)	92, 338
ScrFI	CCNGG	3 cut(s)	45, 135, 397
SfaNI	GCATC	5 cut(s)	151, 160, 169, 226, 256
SinI	GGWCC	2 cut(s)	92, 338
SmlI	CTYRAG	2 cut(s)	407, 447
SmoI	CTYRAG	2 cut(s)	407, 447
Sse9I	AATT	2 cut(s)	183, 480
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	4 cut(s)	122, 273, 300, 361
SspMI	CTAG	2 cut(s)	236, 345
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	3 cut(s)	43, 133, 395
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	2 cut(s)	33, 337
TaqI	TCGA	4 cut(s)	14, 108, 150, 532
TasI	AATT	2 cut(s)	183, 480
TfiI	GAWTC	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	3 cut(s)	246, 375, 524
TspGWI	ACGGA	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	92, 338
XceI	RCATGY	1 cut(s)	421
XspI	CTAG	2 cut(s)	236, 345
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.