Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007006

Physical Location & Seq

Genomic Coordinates Forward (+)

13694327 .. 13698611

Gene Structure 4285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAGTAGCCGTGCCAGCAGAACTCTTTATGTCGGGAACCTCCCCGGTGATATACGCGAGAGAGAGGTGGAAGATTTGTTTTACAAGTATGGACGCATTGCCCACATTGACCTCAAGGTGCCCCCAAGGCCTCCTGGTTATGCATTTGTTGAGTTTGAAGATGCTCGTGATGCTGAAGATGCAATCCGCGGCCGTGATGGCTATGATTTTGATGGCAATCGCTTGAGGGTTGAACTTGCGCATGGTGGCCGTGGACATTCTTCTGGGGGAGATCGTCATAGAGATAGTGGTGGTGGTGGTGGTCGAGGTGGTCGTGGAATGTCTAGGCGCTCCGATTATCGTGTGTTAGTCAGTGGACTACCCTCTTCAGCTTCATGGCAAGATCTTAAGGATCACATGCGACGGGCTGGGGATGTCTGTTTCTCCCAAGTTTTCCGTGATGGTAGTGGCACAACAGGAGTAGTGGACTACACTAACTATGAAGACATGAAGTATGCAATAAAAAAGCTTGATGGCTCTGACTTCAGGAATGCTTTTTCCCGGTCTTCTGTTCGGGTGAGAGAATATGATGCGAAGCGGGACTCGTCTATGAGCCCCGGTCGTGGTCGATCTCATTCAAGAGGTAGAAGCTACAGTCGCAGTCGTAGTAGAAGTTACAGCCGGAGCAGAAGCAGGAGCAAGTCTCCTAAACCTAAATCTTCACGCCGCTCGCCTGGTAGATCTCGATCAAGGTCTGGGTCTCCACCCCGCTCACGATCAAAGTCTCGCTCCCCGTCAGGATATGGATGTATGCGGCAAACTGGGGGATGGATATTAGGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

Ndufs5 RRM_1

Protein Analysis

274

Amino Acids

30.53

Weight (kDa)

10.77

Isoelectric Point (pI)

87.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	2.3e-18	RNA recognition motif
RRM_1	PF00076	115 - 177	2.4e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT4G02430 AT4G02430 AT4G02430 AT4G02430
fragaria_vesca	FvH4_2g25670 FvH4_2g25670 FvH4_2g25670
malus_domestica	MD03G1287500.v1.1 MD11G1310700.v1.1
prunus_persica	Prupe.8G260600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293931
rosa_laevigata	RLG00000011915
rosa_multiflora	Rmu_sc0005647.1_g000008
rosa_roxburghii	Rroxscaffold_7G00173830
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6AG352500 Rh6BG359300 Rh6CG366600 Rh6DG352900
rosa_wichuraiana	Rw6G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	118
AccBSI	CCGCTC	2 cut(s)	708, 750
AccII	CGCG	2 cut(s)	57, 189
AciI	CCGC	6 cut(s)	187, 189, 577, 706, 748, 793
AclWI	GGATC	1 cut(s)	399
AcoI	YGGCCR	2 cut(s)	190, 247
AcuI	CTGAAG	3 cut(s)	195, 351, 508
AfiI	CCNNNNNNNGG	1 cut(s)	602
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	158, 233, 618
AjnI	CCWGG	2 cut(s)	133, 712
AluBI	AGCT	3 cut(s)	371, 508, 630
AluI	AGCT	3 cut(s)	371, 508, 630
Alw26I	GTCTC	3 cut(s)	687, 744, 768
AlwI	GGATC	1 cut(s)	399
AoxI	GGCC	3 cut(s)	128, 190, 247
AspLEI	GCGC	2 cut(s)	241, 330
AsuC2I	CCSGG	3 cut(s)	45, 541, 597
AsuHPI	GGTGA	2 cut(s)	59, 568
BaeGI	GKGCMC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	596
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	2 cut(s)	489, 537
BccI	CCATC	5 cut(s)	191, 206, 434, 506, 801
BceAI	ACGGC	2 cut(s)	177, 234
BciT130I	CCWGG	2 cut(s)	135, 714
BcnI	CCSGG	3 cut(s)	45, 541, 597
BcoDI	GTCTC	3 cut(s)	687, 744, 768
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	631
BfoI	RGCGCY	1 cut(s)	331
BfrI	CTTAAG	1 cut(s)	386
BglI	GCCNNNNNGGC	2 cut(s)	127, 198
BglII	AGATCT	2 cut(s)	382, 719
BisI	GCNGC	3 cut(s)	190, 706, 794
BlsI	GCNGC	3 cut(s)	191, 707, 795
Bme1390I	CCNGG	5 cut(s)	45, 135, 541, 597, 714
BmiI	GGNNCC	2 cut(s)	38, 120
BmrFI	CCNGG	5 cut(s)	45, 135, 541, 597, 714
BmrI	ACTGGG	1 cut(s)	810
BmsI	GCATC	4 cut(s)	151, 160, 169, 559
BmuI	ACTGGG	1 cut(s)	810
BpiI	GAAGAC	2 cut(s)	489, 537
BplI	GAGNNNNNCTC	2 cut(s)	667, 699
BpuEI	CTTGAG	2 cut(s)	98, 244
BpuMI	CCSGG	3 cut(s)	45, 541, 597
BsaBI	GATNNNNATC	2 cut(s)	216, 724
BsaI	GGTCTC	1 cut(s)	744
BsaJI	CCNNGG	5 cut(s)	43, 125, 187, 250, 595
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse1I	ACTGG	1 cut(s)	805
Bse3DI	GCAATG	1 cut(s)	96
Bse8I	GATNNNNATC	2 cut(s)	216, 724
BseBI	CCWGG	2 cut(s)	135, 714
BseDI	CCNNGG	5 cut(s)	43, 125, 187, 250, 595
BseGI	GGATG	3 cut(s)	418, 791, 812
BseJI	GATNNNNATC	2 cut(s)	216, 724
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	805
BseSI	GKGCMC	1 cut(s)	123
BseX3I	CGGCCG	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	407
Bsh1236I	CGCG	2 cut(s)	57, 189
Bsh1285I	CGRYCG	2 cut(s)	193, 601
BshFI	GGCC	3 cut(s)	130, 192, 249
BshNI	GGYRCC	1 cut(s)	118
BsiEI	CGRYCG	2 cut(s)	193, 601
BsiSI	CCGG	4 cut(s)	45, 541, 597, 661
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	3 cut(s)	687, 744, 768
BsmFI	GGGAC	1 cut(s)	593
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	3 cut(s)	130, 192, 249
Bso31I	GGTCTC	1 cut(s)	744
Bsp1286I	GDGCHC	2 cut(s)	123, 596
Bsp143I	GATC	8 cut(s)	271, 382, 391, 608, 719, 725, 755, 818
BspACI	CCGC	6 cut(s)	187, 189, 577, 706, 748, 793
BspANI	GGCC	3 cut(s)	130, 192, 249
BspFNI	CGCG	2 cut(s)	57, 189
BspLI	GGNNCC	2 cut(s)	38, 120
BspPI	GGATC	1 cut(s)	399
BspT107I	GGYRCC	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	744
BsrBI	CCGCTC	2 cut(s)	708, 750
BsrDI	GCAATG	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	805
BssECI	CCNNGG	5 cut(s)	43, 125, 187, 250, 595
BssMI	GATC	8 cut(s)	271, 382, 391, 608, 719, 725, 755, 818
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	135, 714
Bst4CI	ACNGT	1 cut(s)	635
Bst6I	CTCTTC	1 cut(s)	370
BstAFI	CTTAAG	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	16, 710
BstDSI	CCRYGG	2 cut(s)	187, 250
BstF5I	GGATG	3 cut(s)	418, 791, 812
BstFNI	CGCG	2 cut(s)	57, 189
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	241, 330
BstKTI	GATC	8 cut(s)	274, 385, 394, 611, 722, 728, 758, 821
BstMAI	GTCTC	3 cut(s)	687, 744, 768
BstMBI	GATC	8 cut(s)	271, 382, 391, 608, 719, 725, 755, 818
BstMCI	CGRYCG	2 cut(s)	193, 601
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 127, 170, 179, 198, 636
BstNI	CCWGG	2 cut(s)	135, 714
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	5 cut(s)	43, 133, 539, 595, 712
BstSFI	CTRYAG	1 cut(s)	631
BstSLI	GKGCMC	1 cut(s)	123
BstUI	CGCG	2 cut(s)	57, 189
BstV2I	GAAGAC	2 cut(s)	489, 537
BstX2I	RGATCY	3 cut(s)	382, 719, 818
BstYI	RGATCY	3 cut(s)	382, 719, 818
BstZI	CGGCCG	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	130, 192, 249
BtgI	CCRYGG	2 cut(s)	187, 250
BtsCI	GGATG	3 cut(s)	418, 791, 812
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	16, 710
CfoI	GCGC	2 cut(s)	241, 330
Cfr42I	CCGCGG	1 cut(s)	190
CseI	GACGC	1 cut(s)	102
CviAII	CATG	4 cut(s)	242, 375, 397, 487
DpnI	GATC	8 cut(s)	273, 384, 393, 610, 721, 727, 757, 820
DpnII	GATC	8 cut(s)	271, 382, 391, 608, 719, 725, 755, 818
EaeI	YGGCCR	2 cut(s)	190, 247
EagI	CGGCCG	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
EclXI	CGGCCG	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	125
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	596
Eco31I	GGTCTC	1 cut(s)	744
Eco52I	CGGCCG	1 cut(s)	190
Eco57I	CTGAAG	3 cut(s)	195, 351, 508
EcoRII	CCWGG	2 cut(s)	133, 712
EcoT14I	CCWWGG	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	4 cut(s)	245, 378, 400, 490
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	4 cut(s)	241, 374, 396, 486
FauI	CCCGC	2 cut(s)	570, 755
Fnu4HI	GCNGC	3 cut(s)	190, 706, 794
FokI	GGATG	3 cut(s)	425, 798, 819
FriOI	GRGCYC	1 cut(s)	596
Fsp4HI	GCNGC	3 cut(s)	190, 706, 794
FspBI	CTAG	1 cut(s)	324
FspI	TGCGCA	1 cut(s)	240
GlaI	GCGC	2 cut(s)	240, 329
GluI	GCNGC	3 cut(s)	190, 706, 794
GsaI	CCCAGC	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	3 cut(s)	130, 192, 249
HapII	CCGG	4 cut(s)	45, 541, 597, 661
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	2 cut(s)	241, 330
Hin1II	CATG	4 cut(s)	245, 378, 400, 490
Hin6I	GCGC	2 cut(s)	239, 328
HinP1I	GCGC	2 cut(s)	239, 328
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	1 cut(s)	581
HpaII	CCGG	4 cut(s)	45, 541, 597, 661
HphI	GGTGA	2 cut(s)	59, 568
Hpy166II	GTNNAC	3 cut(s)	254, 356, 466
Hpy188I	TCNGA	2 cut(s)	334, 520
Hpy188III	TCNNGA	8 cut(s)	34, 167, 526, 618, 723, 753, 777, 822
Hpy8I	GTNNAC	3 cut(s)	254, 356, 466
Hpy99I	CGWCG	1 cut(s)	405
HpyCH4III	ACNGT	1 cut(s)	635
HpyCH4V	TGCA	3 cut(s)	143, 182, 497
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 127, 170, 179, 198, 636
Hsp92II	CATG	4 cut(s)	245, 378, 400, 490
HspAI	GCGC	2 cut(s)	239, 328
KspI	CCGCGG	1 cut(s)	190
Kzo9I	GATC	8 cut(s)	271, 382, 391, 608, 719, 725, 755, 818
LmnI	GCTCC	4 cut(s)	335, 663, 675, 773
LweI	GCATC	4 cut(s)	151, 160, 169, 559
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	653
MalI	GATC	8 cut(s)	273, 384, 393, 610, 721, 727, 757, 820
MbiI	CCGCTC	2 cut(s)	708, 750
MboI	GATC	8 cut(s)	271, 382, 391, 608, 719, 725, 755, 818
MboII	GAAGA	8 cut(s)	83, 170, 188, 252, 357, 494, 537, 690
MflI	RGATCY	3 cut(s)	382, 719, 818
MhlI	GDGCHC	2 cut(s)	123, 596
MlyI	GAGTC	1 cut(s)	575
MnlI	CCTC	8 cut(s)	50, 58, 122, 141, 219, 299, 373, 614
Mph1103I	ATGCAT	1 cut(s)	145
MseI	TTAA	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	4 cut(s)	45, 541, 597, 661
MspR9I	CCNGG	5 cut(s)	45, 135, 541, 597, 714
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	2 cut(s)	135, 714
MvnI	CGCG	2 cut(s)	57, 189
MwoI	GCNNNNNNNGC	6 cut(s)	15, 127, 170, 179, 198, 636
NciI	CCSGG	3 cut(s)	45, 541, 597
NdeII	GATC	8 cut(s)	271, 382, 391, 608, 719, 725, 755, 818
NlaIII	CATG	4 cut(s)	245, 378, 400, 490
NlaIV	GGNNCC	2 cut(s)	38, 120
NsbI	TGCGCA	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PctI	GAATGC	1 cut(s)	535
PkrI	GCNGC	3 cut(s)	191, 707, 795
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
Psp6I	CCWGG	2 cut(s)	133, 712
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	133, 712
PspN4I	GGNNCC	2 cut(s)	38, 120
PsuI	RGATCY	3 cut(s)	382, 719, 818
SacII	CCGCGG	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	3 cut(s)	190, 706, 794
Sau3AI	GATC	8 cut(s)	271, 382, 391, 608, 719, 725, 755, 818
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	5 cut(s)	45, 135, 541, 597, 714
SduI	GDGCHC	2 cut(s)	123, 596
SfaNI	GCATC	4 cut(s)	151, 160, 169, 559
SfcI	CTRYAG	1 cut(s)	631
Sfr303I	CCGCGG	1 cut(s)	190
SgrBI	CCGCGG	1 cut(s)	190
SmlI	CTYRAG	3 cut(s)	113, 223, 386
SmoI	CTYRAG	3 cut(s)	113, 223, 386
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	6 cut(s)	187, 189, 577, 706, 748, 793
SspMI	CTAG	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	5 cut(s)	43, 133, 539, 595, 712
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	635
TaqI	TCGA	3 cut(s)	304, 607, 724
TauI	GCSGC	3 cut(s)	192, 708, 796
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	358
TspDTI	ATGAA	3 cut(s)	363, 495, 503
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	1 cut(s)	358
Vha464I	CTTAAG	1 cut(s)	386
XceI	RCATGY	1 cut(s)	400
XspI	CTAG	1 cut(s)	324
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.