Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007006

Physical Location & Seq

Genomic Coordinates Reverse (-)

20745009 .. 20749189

Gene Structure 4181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25670.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAGTAGCCGCGCAAGCAGAACTCTCTACGTCGGGAACCTCCCCGGTGACATACGCGAGAGAGAGGTCGAAGATTTGTTCTACAAGTATGGACGCATAGCTCATATCGACCTGAAGGTGCCGCCAAGGCCTCCCGGCTATGCGTTTGTTGAGTTTGAAGATGCTCGTGATGCCGAAGATGCAATCCGCGGCCGTGATGGCTATGATTTTGATGGCCATCGCTTGAGGGTCGAACTTGCACACGGTGGGCGTGGGCATTCTTCTGGTGGAGATCGGCATAGAGATAGCGGTGGTGGTGGTGGTGGTGGTCGAGGTGGACGTGGAATGTCTAGGCGCTCCGACTTTCGTGTGTTGGTCAGTGGACTACCTTCTTCAGCTTCATGGCAAGATCTTAAGGATCACATGCGCCGGGCTGGGGATGTCTGTTTCTCCCAAGTTTTCCGTGATGGTAGTGGCACAACAGGAGTAGTGGACTACACTAACTATGAAGACATGAAGTATGCCATAAAGAAACTTGACGGCTCTGACTTTAGGAATGCTTTTTCCCGGTCCGCTGTTCGGGTGAGGGAGTATGACGCGAAGCGGGATTCATCTATGAGCCCCGGTCGTGGTCGATCTCCTTCAAGAGGTAGAAGCTACAGTCGCAGTCGTAGTAGAAGTTATAGCCGGAGCAAAAGCAGGAGCAAGTCTCCTAAACCCAAATCTTCACGCCGCTCTCCTGGTAGATCTCGATCAAGGTCCAGGTCTCCACCTCGTTCACGATCAAAGTCTCGTTCTCTGTCGGGATCACGATCGAGAAGCAGATCTCCATTGCCTTCGAAGCGCATAAGTAAAAGCCCGAAGAAAGACGCTAGTAAAAGTCCGAAGAAGCGCAGTGGCAGTCGAAGTCCAAGCCGTAGCAGGAGCAGGAGCAAGAGTTTGTCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

Ndufs5 RRM_1

Protein Analysis

310

Amino Acids

34.39

Weight (kDa)

11.41

Isoelectric Point (pI)

103.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	2.1e-18	RNA recognition motif
RRM_1	PF00076	117 - 179	3e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT4G02430 AT4G02430 AT4G02430 AT4G02430
fragaria_vesca	FvH4_2g25670 FvH4_2g25670 FvH4_2g25670
malus_domestica	MD03G1287500.v1.1 MD11G1310700.v1.1
prunus_persica	Prupe.8G260600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293931
rosa_laevigata	RLG00000011915
rosa_multiflora	Rmu_sc0005647.1_g000008
rosa_roxburghii	Rroxscaffold_7G00173830
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6AG352500 Rh6BG359300 Rh6CG366600 Rh6DG352900
rosa_wichuraiana	Rw6G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	118
AccBSI	CCGCTC	1 cut(s)	714
AccII	CGCG	4 cut(s)	12, 57, 189, 578
AciI	CCGC	8 cut(s)	10, 122, 187, 189, 288, 552, 583, 712
AclWI	GGATC	2 cut(s)	405, 793
AcoI	YGGCCR	2 cut(s)	190, 214
AcuI	CTGAAG	2 cut(s)	134, 357
AdeI	CACNNNGTG	1 cut(s)	245
AfiI	CCNNNNNNNGG	4 cut(s)	415, 558, 608, 626
AflII	CTTAAG	1 cut(s)	392
AgsI	TTSAA	2 cut(s)	158, 624
AjiI	CACGTC	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	718, 740
AluBI	AGCT	3 cut(s)	101, 377, 636
AluI	AGCT	3 cut(s)	101, 377, 636
Alw26I	GTCTC	3 cut(s)	693, 750, 774
AlwI	GGATC	2 cut(s)	405, 793
AoxI	GGCC	3 cut(s)	128, 190, 214
AspLEI	GCGC	5 cut(s)	14, 336, 408, 825, 873
AspS9I	GGNCC	2 cut(s)	549, 738
AsuC2I	CCSGG	5 cut(s)	45, 135, 410, 547, 603
AsuHPI	GGTGA	2 cut(s)	59, 574
AsuII	TTCGAA	1 cut(s)	818
AvaII	GGWCC	2 cut(s)	549, 738
BalI	TGGCCA	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	602
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	495
BccI	CCATC	4 cut(s)	191, 206, 225, 440
BceAI	ACGGC	3 cut(s)	177, 535, 879
BciT130I	CCWGG	2 cut(s)	720, 742
BcnI	CCSGG	5 cut(s)	45, 135, 410, 547, 603
BcoDI	GTCTC	3 cut(s)	693, 750, 774
BfaI	CTAG	2 cut(s)	330, 852
BfmI	CTRYAG	1 cut(s)	637
BfoI	RGCGCY	1 cut(s)	337
BfrI	CTTAAG	1 cut(s)	392
BglI	GCCNNNNNGGC	2 cut(s)	127, 198
BglII	AGATCT	3 cut(s)	388, 725, 803
BisI	GCNGC	4 cut(s)	10, 122, 190, 712
BlsI	GCNGC	4 cut(s)	11, 123, 191, 713
Bme1390I	CCNGG	7 cut(s)	45, 135, 410, 547, 603, 720, 742
Bme18I	GGWCC	2 cut(s)	549, 738
BmgBI	CACGTC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	549, 738
BmiI	GGNNCC	2 cut(s)	38, 120
BmrFI	CCNGG	7 cut(s)	45, 135, 410, 547, 603, 720, 742
BmsI	GCATC	3 cut(s)	151, 160, 169
BpiI	GAAGAC	1 cut(s)	495
BplI	GAGNNNNNCTC	2 cut(s)	673, 705
Bpu14I	TTCGAA	1 cut(s)	818
BpuEI	CTTGAG	1 cut(s)	244
BpuMI	CCSGG	5 cut(s)	45, 135, 410, 547, 603
BsaBI	GATNNNNATC	3 cut(s)	216, 730, 790
BsaI	GGTCTC	1 cut(s)	750
BsaJI	CCNNGG	4 cut(s)	43, 125, 187, 601
BsaXI	ACNNNNNCTCC	1 cut(s)	901
Bsc4I	CCNNNNNNNGG	4 cut(s)	415, 558, 608, 626
Bse3DI	GCAATG	1 cut(s)	809
Bse8I	GATNNNNATC	3 cut(s)	216, 730, 790
BseBI	CCWGG	2 cut(s)	720, 742
BseDI	CCNNGG	4 cut(s)	43, 125, 187, 601
BseGI	GGATG	1 cut(s)	424
BseJI	GATNNNNATC	3 cut(s)	216, 730, 790
BseLI	CCNNNNNNNGG	4 cut(s)	415, 558, 608, 626
BseMI	GCAATG	1 cut(s)	809
BseX3I	CGGCCG	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	413
Bsh1236I	CGCG	4 cut(s)	12, 57, 189, 578
Bsh1285I	CGRYCG	3 cut(s)	193, 607, 794
BshFI	GGCC	3 cut(s)	130, 192, 216
BshNI	GGYRCC	1 cut(s)	118
BsiEI	CGRYCG	3 cut(s)	193, 607, 794
BsiSI	CCGG	6 cut(s)	45, 135, 409, 547, 603, 667
BslI	CCNNNNNNNGG	4 cut(s)	415, 558, 608, 626
BsmAI	GTCTC	3 cut(s)	693, 750, 774
BsmI	GAATGC	2 cut(s)	256, 541
BsnI	GGCC	3 cut(s)	130, 192, 216
Bso31I	GGTCTC	1 cut(s)	750
Bsp119I	TTCGAA	1 cut(s)	818
Bsp1286I	GDGCHC	1 cut(s)	602
BspACI	CCGC	8 cut(s)	10, 122, 187, 189, 288, 552, 583, 712
BspANI	GGCC	3 cut(s)	130, 192, 216
BspFNI	CGCG	4 cut(s)	12, 57, 189, 578
BspLI	GGNNCC	2 cut(s)	38, 120
BspPI	GGATC	2 cut(s)	405, 793
BspT104I	TTCGAA	1 cut(s)	818
BspT107I	GGYRCC	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	750
BsrBI	CCGCTC	1 cut(s)	714
BsrDI	GCAATG	1 cut(s)	809
BssECI	CCNNGG	4 cut(s)	43, 125, 187, 601
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	720, 742
Bst4CI	ACNGT	3 cut(s)	245, 641, 927
BstAFI	CTTAAG	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	818
BstC8I	GCNNGC	1 cut(s)	16
BstDSI	CCRYGG	1 cut(s)	187
BstENI	CCTNNNNNAGG	1 cut(s)	624
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	4 cut(s)	12, 57, 189, 578
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	5 cut(s)	14, 336, 408, 825, 873
BstMAI	GTCTC	3 cut(s)	693, 750, 774
BstMCI	CGRYCG	3 cut(s)	193, 607, 794
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 127, 170, 179, 198, 642, 820
BstNI	CCWGG	2 cut(s)	720, 742
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	7 cut(s)	43, 133, 408, 545, 601, 718, 740
BstSFI	CTRYAG	1 cut(s)	637
BstUI	CGCG	4 cut(s)	12, 57, 189, 578
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	3 cut(s)	388, 725, 803
BstYI	RGATCY	3 cut(s)	388, 725, 803
BstZI	CGGCCG	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	130, 192, 216
BtgI	CCRYGG	1 cut(s)	187
BtgZI	GCGATG	1 cut(s)	203
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	1 cut(s)	880
BtsIMutI	CAGTG	2 cut(s)	364, 880
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	5 cut(s)	14, 336, 408, 825, 873
Cfr13I	GGNCC	2 cut(s)	549, 738
Cfr42I	CCGCGG	1 cut(s)	190
CpoI	CGGWCCG	1 cut(s)	549
CseI	GACGC	3 cut(s)	102, 584, 857
CspI	CGGWCCG	1 cut(s)	549
CviAII	CATG	3 cut(s)	381, 403, 493
DraIII	CACNNNGTG	1 cut(s)	245
EaeI	YGGCCR	2 cut(s)	190, 214
EagI	CGGCCG	1 cut(s)	190
EclXI	CGGCCG	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	125
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	602
Eco31I	GGTCTC	1 cut(s)	750
Eco47I	GGWCC	2 cut(s)	549, 738
Eco52I	CGGCCG	1 cut(s)	190
Eco57I	CTGAAG	2 cut(s)	134, 357
EcoNI	CCTNNNNNAGG	1 cut(s)	624
EcoRII	CCWGG	2 cut(s)	718, 740
EcoT14I	CCWWGG	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	3 cut(s)	384, 406, 496
FatI	CATG	3 cut(s)	380, 402, 492
FauI	CCCGC	1 cut(s)	576
Fnu4HI	GCNGC	4 cut(s)	10, 122, 190, 712
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	4 cut(s)	10, 122, 190, 712
FspBI	CTAG	2 cut(s)	330, 852
GlaI	GCGC	5 cut(s)	13, 335, 407, 824, 872
GluI	GCNGC	4 cut(s)	10, 122, 190, 712
GsaI	CCCAGC	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	3 cut(s)	130, 192, 216
HapII	CCGG	6 cut(s)	45, 135, 409, 547, 603, 667
HgaI	GACGC	3 cut(s)	102, 584, 857
HhaI	GCGC	5 cut(s)	14, 336, 408, 825, 873
Hin1II	CATG	3 cut(s)	384, 406, 496
Hin6I	GCGC	5 cut(s)	12, 334, 406, 823, 871
HinP1I	GCGC	5 cut(s)	12, 334, 406, 823, 871
HinfI	GANTC	1 cut(s)	587
HpaII	CCGG	6 cut(s)	45, 135, 409, 547, 603, 667
HphI	GGTGA	2 cut(s)	59, 574
Hpy166II	GTNNAC	4 cut(s)	317, 362, 472, 758
Hpy188I	TCNGA	3 cut(s)	340, 526, 864
Hpy188III	TCNNGA	8 cut(s)	34, 167, 624, 729, 759, 783, 789, 795
Hpy8I	GTNNAC	4 cut(s)	317, 362, 472, 758
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	4 cut(s)	109, 378, 630, 825
HpyCH4III	ACNGT	3 cut(s)	245, 641, 927
HpyCH4IV	ACGT	2 cut(s)	30, 319
HpyCH4V	TGCA	2 cut(s)	182, 239
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 127, 170, 179, 198, 642, 820
HpySE526I	ACGT	2 cut(s)	30, 319
Hsp92II	CATG	3 cut(s)	384, 406, 496
HspAI	GCGC	5 cut(s)	12, 334, 406, 823, 871
KspI	CCGCGG	1 cut(s)	190
LmnI	GCTCC	5 cut(s)	341, 669, 681, 903, 909
LweI	GCATC	3 cut(s)	151, 160, 169
MaeI	CTAG	2 cut(s)	330, 852
MaeII	ACGT	2 cut(s)	30, 319
MaeIII	GTNAC	2 cut(s)	47, 921
MbiI	CCGCTC	1 cut(s)	714
MboII	GAAGA	9 cut(s)	83, 170, 188, 252, 363, 500, 696, 853, 877
MflI	RGATCY	3 cut(s)	388, 725, 803
MhlI	GDGCHC	1 cut(s)	602
MlsI	TGGCCA	1 cut(s)	216
MluNI	TGGCCA	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	8 cut(s)	50, 58, 141, 219, 305, 558, 620, 762
Mox20I	TGGCCA	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	216
MspA1I	CMGCKG	2 cut(s)	189, 554
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	6 cut(s)	45, 135, 409, 547, 603, 667
MspR9I	CCNGG	7 cut(s)	45, 135, 410, 547, 603, 720, 742
Mva1269I	GAATGC	2 cut(s)	256, 541
MvaI	CCWGG	2 cut(s)	720, 742
MvnI	CGCG	4 cut(s)	12, 57, 189, 578
MwoI	GCNNNNNNNGC	7 cut(s)	15, 127, 170, 179, 198, 642, 820
NciI	CCSGG	5 cut(s)	45, 135, 410, 547, 603
NlaIII	CATG	3 cut(s)	384, 406, 496
NlaIV	GGNNCC	2 cut(s)	38, 120
NmuCI	GTSAC	2 cut(s)	47, 921
NspI	RCATGY	1 cut(s)	406
NspV	TTCGAA	1 cut(s)	818
PceI	AGGCCT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	316
PctI	GAATGC	2 cut(s)	256, 541
PfeI	GAWTC	1 cut(s)	587
PkrI	GCNGC	4 cut(s)	11, 123, 191, 713
Ple19I	CGATCG	1 cut(s)	794
Psp6I	CCWGG	2 cut(s)	718, 740
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	2 cut(s)	718, 740
PspN4I	GGNNCC	2 cut(s)	38, 120
PspPI	GGNCC	2 cut(s)	549, 738
PsuI	RGATCY	3 cut(s)	388, 725, 803
PvuI	CGATCG	1 cut(s)	794
Rsr2I	CGGWCCG	1 cut(s)	549
RsrII	CGGWCCG	1 cut(s)	549
SacII	CCGCGG	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	4 cut(s)	10, 122, 190, 712
Sau96I	GGNCC	2 cut(s)	549, 738
ScrFI	CCNGG	7 cut(s)	45, 135, 410, 547, 603, 720, 742
SduI	GDGCHC	1 cut(s)	602
SfaNI	GCATC	3 cut(s)	151, 160, 169
SfcI	CTRYAG	1 cut(s)	637
Sfr303I	CCGCGG	1 cut(s)	190
SfuI	TTCGAA	1 cut(s)	818
SgrBI	CCGCGG	1 cut(s)	190
SinI	GGWCC	2 cut(s)	549, 738
SmlI	CTYRAG	2 cut(s)	223, 392
SmoI	CTYRAG	2 cut(s)	223, 392
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	8 cut(s)	10, 122, 187, 189, 288, 552, 583, 712
SspMI	CTAG	2 cut(s)	330, 852
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	7 cut(s)	43, 133, 408, 545, 601, 718, 740
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	3 cut(s)	245, 641, 927
TaiI	ACGT	2 cut(s)	33, 322
TaqI	TCGA	9 cut(s)	69, 108, 231, 310, 613, 730, 794, 818, 883
TauI	GCSGC	4 cut(s)	12, 124, 192, 714
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	2 cut(s)	364, 880
TseFI	GTSAC	2 cut(s)	47, 921
Tsp45I	GTSAC	2 cut(s)	47, 921
TspDTI	ATGAA	4 cut(s)	369, 501, 509, 579
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	2 cut(s)	364, 880
Vha464I	CTTAAG	1 cut(s)	392
VpaK11BI	GGWCC	2 cut(s)	549, 738
XagI	CCTNNNNNAGG	1 cut(s)	624
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	2 cut(s)	330, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.