Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007006

Physical Location & Seq

Genomic Coordinates Reverse (-)

55483243 .. 55487890

Gene Structure 4648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG366600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAGTAGCCGTGCCAGCAGAACTCTTTATGTCGGGAACCTCCCCGGTGATATACGCGAGAGAGAGGTGGAAGATTTGTTTTACAAGTATGGACGCATTGCCCATATTGACCTCAAGGTGCCCCCAAGGCCTCCTGGTTATGCATTTGTTGAGTTTGAAGATGCTCGTGATGCTGAAGATGCAATCCGCGGCCGTGATGGCTATGATTTTGATGGCAATCGCTTGAGGGTTGAACTTGCGCATGGTGGCCGTGGACATTCTTCTGGGGGAGATCGTCATAGAGATAGTGGTGGTGGTGGTGGTGGTCGAGGTGGACGTGGAATGTCTAGGCGCTCCGATTATCGTGTGTTAGTCAGTGGACTACCCTCTTCAGCTTCATGGCAAGATCTTAAGGATCACATGCGACGGGCTGGGGATGTCTGTTTCTCCCAAGTTTTCCGTGATGGTAGTGGCACAACAGGAGTAGTGGACTACACTAACTATGAAGACATGAAGTATGCAATAAAAAAGCTTGATGGCTCTGACTTCAGGAATGCTTTTTCCCGGTCTTCTGTTCGGGTGAGAGAATATGATGCGAAGCGGGACTCGTCTATGAGCCCCGGTCGTGGTCGATCTCATTCAAGAGGTAGAAGCTACAGTCGCAGTCGTAGTAGAAGTTATAGCCGGAGCAGAAGCAGGAGCAAGTCTCCTAAACCTAAATCTTCACGCCGCTCGCCTGGTAGATCTCGATCAAGGTCTGGGTCTCCACCCCGCTCACGATCAAAGTCTCGCTCCCCGTCAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

Ndufs5 RRM_1

Protein Analysis

261

Amino Acids

29.07

Weight (kDa)

10.84

Isoelectric Point (pI)

89.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	2.1e-18	RNA recognition motif
RRM_1	PF00076	116 - 178	2.2e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT4G02430 AT4G02430 AT4G02430 AT4G02430
fragaria_vesca	FvH4_2g25670 FvH4_2g25670 FvH4_2g25670
malus_domestica	MD03G1287500.v1.1 MD11G1310700.v1.1
prunus_persica	Prupe.8G260600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293931
rosa_laevigata	RLG00000011915
rosa_multiflora	Rmu_sc0005647.1_g000008
rosa_roxburghii	Rroxscaffold_7G00173830
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6AG352500 Rh6BG359300 Rh6CG366600 Rh6DG352900
rosa_wichuraiana	Rw6G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	118
AccBSI	CCGCTC	2 cut(s)	711, 753
AccII	CGCG	2 cut(s)	57, 189
AciI	CCGC	5 cut(s)	187, 189, 580, 709, 751
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	2 cut(s)	190, 247
AcuI	CTGAAG	3 cut(s)	195, 354, 511
AfiI	CCNNNNNNNGG	2 cut(s)	605, 780
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	3 cut(s)	158, 233, 621
AjiI	CACGTC	1 cut(s)	317
AjnI	CCWGG	2 cut(s)	133, 715
AluBI	AGCT	3 cut(s)	374, 511, 633
AluI	AGCT	3 cut(s)	374, 511, 633
Alw26I	GTCTC	3 cut(s)	690, 747, 771
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	3 cut(s)	128, 190, 247
AspLEI	GCGC	2 cut(s)	241, 333
AsuC2I	CCSGG	3 cut(s)	45, 544, 600
AsuHPI	GGTGA	2 cut(s)	59, 571
BaeGI	GKGCMC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	599
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	2 cut(s)	492, 540
BccI	CCATC	4 cut(s)	191, 206, 437, 509
BceAI	ACGGC	2 cut(s)	177, 234
BciT130I	CCWGG	2 cut(s)	135, 717
BcnI	CCSGG	3 cut(s)	45, 544, 600
BcoDI	GTCTC	3 cut(s)	690, 747, 771
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	634
BfoI	RGCGCY	1 cut(s)	334
BfrI	CTTAAG	1 cut(s)	389
BglI	GCCNNNNNGGC	2 cut(s)	127, 198
BglII	AGATCT	2 cut(s)	385, 722
BisI	GCNGC	2 cut(s)	190, 709
BlsI	GCNGC	2 cut(s)	191, 710
Bme1390I	CCNGG	5 cut(s)	45, 135, 544, 600, 717
BmgBI	CACGTC	1 cut(s)	317
BmiI	GGNNCC	2 cut(s)	38, 120
BmrFI	CCNGG	5 cut(s)	45, 135, 544, 600, 717
BmsI	GCATC	4 cut(s)	151, 160, 169, 562
BpiI	GAAGAC	2 cut(s)	492, 540
BplI	GAGNNNNNCTC	2 cut(s)	670, 702
BpuEI	CTTGAG	2 cut(s)	98, 244
BpuMI	CCSGG	3 cut(s)	45, 544, 600
BsaBI	GATNNNNATC	2 cut(s)	216, 727
BsaI	GGTCTC	1 cut(s)	747
BsaJI	CCNNGG	5 cut(s)	43, 125, 187, 250, 598
Bsc4I	CCNNNNNNNGG	2 cut(s)	605, 780
Bse3DI	GCAATG	1 cut(s)	96
Bse8I	GATNNNNATC	2 cut(s)	216, 727
BseBI	CCWGG	2 cut(s)	135, 717
BseDI	CCNNGG	5 cut(s)	43, 125, 187, 250, 598
BseGI	GGATG	1 cut(s)	421
BseJI	GATNNNNATC	2 cut(s)	216, 727
BseLI	CCNNNNNNNGG	2 cut(s)	605, 780
BseMI	GCAATG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	123
BseX3I	CGGCCG	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	410
Bsh1236I	CGCG	2 cut(s)	57, 189
Bsh1285I	CGRYCG	2 cut(s)	193, 604
BshFI	GGCC	3 cut(s)	130, 192, 249
BshNI	GGYRCC	1 cut(s)	118
BsiEI	CGRYCG	2 cut(s)	193, 604
BsiSI	CCGG	4 cut(s)	45, 544, 600, 664
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	2 cut(s)	605, 780
BsmAI	GTCTC	3 cut(s)	690, 747, 771
BsmFI	GGGAC	1 cut(s)	596
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	3 cut(s)	130, 192, 249
Bso31I	GGTCTC	1 cut(s)	747
Bsp1286I	GDGCHC	2 cut(s)	123, 599
Bsp143I	GATC	7 cut(s)	271, 385, 394, 611, 722, 728, 758
BspACI	CCGC	5 cut(s)	187, 189, 580, 709, 751
BspANI	GGCC	3 cut(s)	130, 192, 249
BspFNI	CGCG	2 cut(s)	57, 189
BspLI	GGNNCC	2 cut(s)	38, 120
BspPI	GGATC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	747
BsrBI	CCGCTC	2 cut(s)	711, 753
BsrDI	GCAATG	1 cut(s)	96
BssECI	CCNNGG	5 cut(s)	43, 125, 187, 250, 598
BssMI	GATC	7 cut(s)	271, 385, 394, 611, 722, 728, 758
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	135, 717
Bst4CI	ACNGT	1 cut(s)	638
Bst6I	CTCTTC	1 cut(s)	373
BstAFI	CTTAAG	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	16, 713
BstDSI	CCRYGG	2 cut(s)	187, 250
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	2 cut(s)	57, 189
BstH2I	RGCGCY	1 cut(s)	334
BstHHI	GCGC	2 cut(s)	241, 333
BstKTI	GATC	7 cut(s)	274, 388, 397, 614, 725, 731, 761
BstMAI	GTCTC	3 cut(s)	690, 747, 771
BstMBI	GATC	7 cut(s)	271, 385, 394, 611, 722, 728, 758
BstMCI	CGRYCG	2 cut(s)	193, 604
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 127, 170, 179, 198, 639
BstNI	CCWGG	2 cut(s)	135, 717
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	5 cut(s)	43, 133, 542, 598, 715
BstSFI	CTRYAG	1 cut(s)	634
BstSLI	GKGCMC	1 cut(s)	123
BstUI	CGCG	2 cut(s)	57, 189
BstV2I	GAAGAC	2 cut(s)	492, 540
BstX2I	RGATCY	2 cut(s)	385, 722
BstYI	RGATCY	2 cut(s)	385, 722
BstZI	CGGCCG	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	130, 192, 249
BtgI	CCRYGG	2 cut(s)	187, 250
BtrI	CACGTC	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	2 cut(s)	16, 713
CfoI	GCGC	2 cut(s)	241, 333
Cfr42I	CCGCGG	1 cut(s)	190
CseI	GACGC	1 cut(s)	102
CviAII	CATG	4 cut(s)	242, 378, 400, 490
DpnI	GATC	7 cut(s)	273, 387, 396, 613, 724, 730, 760
DpnII	GATC	7 cut(s)	271, 385, 394, 611, 722, 728, 758
EaeI	YGGCCR	2 cut(s)	190, 247
EagI	CGGCCG	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
EclXI	CGGCCG	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	125
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	747
Eco52I	CGGCCG	1 cut(s)	190
Eco57I	CTGAAG	3 cut(s)	195, 354, 511
EcoRII	CCWGG	2 cut(s)	133, 715
EcoT14I	CCWWGG	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	4 cut(s)	245, 381, 403, 493
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	4 cut(s)	241, 377, 399, 489
FauI	CCCGC	2 cut(s)	573, 758
Fnu4HI	GCNGC	2 cut(s)	190, 709
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	599
Fsp4HI	GCNGC	2 cut(s)	190, 709
FspBI	CTAG	1 cut(s)	327
FspI	TGCGCA	1 cut(s)	240
GlaI	GCGC	2 cut(s)	240, 332
GluI	GCNGC	2 cut(s)	190, 709
GsaI	CCCAGC	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	334
HaeIII	GGCC	3 cut(s)	130, 192, 249
HapII	CCGG	4 cut(s)	45, 544, 600, 664
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	2 cut(s)	241, 333
Hin1II	CATG	4 cut(s)	245, 381, 403, 493
Hin6I	GCGC	2 cut(s)	239, 331
HinP1I	GCGC	2 cut(s)	239, 331
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	1 cut(s)	584
HpaII	CCGG	4 cut(s)	45, 544, 600, 664
HphI	GGTGA	2 cut(s)	59, 571
Hpy166II	GTNNAC	4 cut(s)	254, 314, 359, 469
Hpy188I	TCNGA	2 cut(s)	337, 523
Hpy188III	TCNNGA	6 cut(s)	34, 167, 529, 621, 726, 756
Hpy8I	GTNNAC	4 cut(s)	254, 314, 359, 469
Hpy99I	CGWCG	1 cut(s)	408
HpyCH4III	ACNGT	1 cut(s)	638
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	3 cut(s)	143, 182, 500
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 127, 170, 179, 198, 639
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	4 cut(s)	245, 381, 403, 493
HspAI	GCGC	2 cut(s)	239, 331
KspI	CCGCGG	1 cut(s)	190
Kzo9I	GATC	7 cut(s)	271, 385, 394, 611, 722, 728, 758
LmnI	GCTCC	4 cut(s)	338, 666, 678, 776
LweI	GCATC	4 cut(s)	151, 160, 169, 562
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	316
MalI	GATC	7 cut(s)	273, 387, 396, 613, 724, 730, 760
MbiI	CCGCTC	2 cut(s)	711, 753
MboI	GATC	7 cut(s)	271, 385, 394, 611, 722, 728, 758
MboII	GAAGA	8 cut(s)	83, 170, 188, 252, 360, 497, 540, 693
MflI	RGATCY	2 cut(s)	385, 722
MhlI	GDGCHC	2 cut(s)	123, 599
MlyI	GAGTC	1 cut(s)	578
MnlI	CCTC	8 cut(s)	50, 58, 122, 141, 219, 302, 376, 617
Mph1103I	ATGCAT	1 cut(s)	145
MseI	TTAA	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	389
MspI	CCGG	4 cut(s)	45, 544, 600, 664
MspR9I	CCNGG	5 cut(s)	45, 135, 544, 600, 717
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	2 cut(s)	135, 717
MvnI	CGCG	2 cut(s)	57, 189
MwoI	GCNNNNNNNGC	6 cut(s)	15, 127, 170, 179, 198, 639
NciI	CCSGG	3 cut(s)	45, 544, 600
NdeII	GATC	7 cut(s)	271, 385, 394, 611, 722, 728, 758
NlaIII	CATG	4 cut(s)	245, 381, 403, 493
NlaIV	GGNNCC	2 cut(s)	38, 120
NsbI	TGCGCA	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	1 cut(s)	403
PceI	AGGCCT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PctI	GAATGC	1 cut(s)	538
PkrI	GCNGC	2 cut(s)	191, 710
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
Psp6I	CCWGG	2 cut(s)	133, 715
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	2 cut(s)	133, 715
PspN4I	GGNNCC	2 cut(s)	38, 120
PsuI	RGATCY	2 cut(s)	385, 722
SacII	CCGCGG	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	2 cut(s)	190, 709
Sau3AI	GATC	7 cut(s)	271, 385, 394, 611, 722, 728, 758
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	5 cut(s)	45, 135, 544, 600, 717
SduI	GDGCHC	2 cut(s)	123, 599
SfaNI	GCATC	4 cut(s)	151, 160, 169, 562
SfcI	CTRYAG	1 cut(s)	634
Sfr303I	CCGCGG	1 cut(s)	190
SgrBI	CCGCGG	1 cut(s)	190
SmlI	CTYRAG	3 cut(s)	113, 223, 389
SmoI	CTYRAG	3 cut(s)	113, 223, 389
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	5 cut(s)	187, 189, 580, 709, 751
SspMI	CTAG	1 cut(s)	327
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	5 cut(s)	43, 133, 542, 598, 715
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	638
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	3 cut(s)	307, 610, 727
TauI	GCSGC	2 cut(s)	192, 711
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	361
TspDTI	ATGAA	3 cut(s)	366, 498, 506
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	361
Vha464I	CTTAAG	1 cut(s)	389
XceI	RCATGY	1 cut(s)	403
XspI	CTAG	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.