Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007006

Physical Location & Seq

Genomic Coordinates Reverse (-)

58992974 .. 58997489

Gene Structure 4516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG359300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGTAGCCGTGCCAGCAGAACTCTTTATGTCGGGAACCTCCCCGGTGATATACGCGAGAGAGAGGTGGAAGATTTGTTTTACAAGTATGGACGCATTGCCCATATTGACCTCAAGGTGCCCCCAAGGCCTCCTGGTTATGCATTTGTTGAGTTTGAAGATGCTCGTGATGCTGAAGATGCAATCCGCGGCCGTGATGGCTATGATTTTGATGGCAATCGCTTGAGGGTTGAACTTGCGCATGGTGGCCGTGGACATTCTTCTGGGGGAGATCGTCATAGAGATAGTGGTGGTGGTGGTCGAGGTGGACGTGGAATGTCTAGGCGCTCCGATTATCGTGTGTTAGTCAGTGGACTACCCTCTTCAGCTTCATGGCAAGATCTTAAGGATCACATGCGACGGGCTGGGGATGTCTGTTTCTCCCAAGTTTTCCGTGATGGTAGTGGCACAACAGGAGTAGTGGACTACACTAACTATGAAGACATGAAGTATGCAATAAAAAAGCTTGATGGCTCTGACTTCAGGAATGCTTTTTCCCGGTCTTCTGTTCGGGTGAGAGAATATGATGCGAAGCGGGACTCGTCTATGAGCCCCGGTCGTGGTCGATCTCATTCAGGAGGTAGAAGCTACAGTCGCAGTCGTAGTAGAAGTTATAGCCGGAGCAGAAGCAGGAGGTTTGGCCATTTTAAATTACACAACTTAGTAAAATGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

Ndufs5 RRM_1

Protein Analysis

238

Amino Acids

26.76

Weight (kDa)

10.1

Isoelectric Point (pI)

67.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	1.8e-18	RNA recognition motif
RRM_1	PF00076	114 - 176	1.9e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT4G02430 AT4G02430 AT4G02430 AT4G02430
fragaria_vesca	FvH4_2g25670 FvH4_2g25670 FvH4_2g25670
malus_domestica	MD03G1287500.v1.1 MD11G1310700.v1.1
prunus_persica	Prupe.8G260600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293931
rosa_laevigata	RLG00000011915
rosa_multiflora	Rmu_sc0005647.1_g000008
rosa_roxburghii	Rroxscaffold_7G00173830
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6AG352500 Rh6BG359300 Rh6CG366600 Rh6DG352900
rosa_wichuraiana	Rw6G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	118
AccII	CGCG	2 cut(s)	57, 189
AciI	CCGC	3 cut(s)	187, 189, 574
AclWI	GGATC	1 cut(s)	396
AcoI	YGGCCR	3 cut(s)	190, 247, 679
AcuI	CTGAAG	3 cut(s)	195, 348, 505
AfiI	CCNNNNNNNGG	1 cut(s)	599
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	158, 233
AjiI	CACGTC	1 cut(s)	311
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	3 cut(s)	368, 505, 627
AluI	AGCT	3 cut(s)	368, 505, 627
AlwI	GGATC	1 cut(s)	396
AoxI	GGCC	4 cut(s)	128, 190, 247, 679
AspLEI	GCGC	2 cut(s)	241, 327
AsuC2I	CCSGG	3 cut(s)	45, 538, 594
AsuHPI	GGTGA	2 cut(s)	59, 565
BaeGI	GKGCMC	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	593
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	2 cut(s)	486, 534
BccI	CCATC	4 cut(s)	191, 206, 431, 503
BceAI	ACGGC	2 cut(s)	177, 234
BciT130I	CCWGG	1 cut(s)	135
BcnI	CCSGG	3 cut(s)	45, 538, 594
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	628
BfoI	RGCGCY	1 cut(s)	328
BfrI	CTTAAG	1 cut(s)	383
BglI	GCCNNNNNGGC	2 cut(s)	127, 198
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	4 cut(s)	45, 135, 538, 594
BmgBI	CACGTC	1 cut(s)	311
BmiI	GGNNCC	2 cut(s)	38, 120
BmrFI	CCNGG	4 cut(s)	45, 135, 538, 594
BmsI	GCATC	4 cut(s)	151, 160, 169, 556
BpiI	GAAGAC	2 cut(s)	486, 534
BpuEI	CTTGAG	2 cut(s)	98, 244
BpuMI	CCSGG	3 cut(s)	45, 538, 594
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	5 cut(s)	43, 125, 187, 250, 592
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse3DI	GCAATG	1 cut(s)	96
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	5 cut(s)	43, 125, 187, 250, 592
BseGI	GGATG	1 cut(s)	415
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMI	GCAATG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	123
BseX3I	CGGCCG	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	404
Bsh1236I	CGCG	2 cut(s)	57, 189
Bsh1285I	CGRYCG	2 cut(s)	193, 598
BshFI	GGCC	4 cut(s)	130, 192, 249, 681
BshNI	GGYRCC	1 cut(s)	118
BsiEI	CGRYCG	2 cut(s)	193, 598
BsiSI	CCGG	4 cut(s)	45, 538, 594, 658
BslFI	GGGAC	1 cut(s)	590
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmFI	GGGAC	1 cut(s)	590
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	4 cut(s)	130, 192, 249, 681
Bsp1286I	GDGCHC	2 cut(s)	123, 593
Bsp143I	GATC	4 cut(s)	271, 379, 388, 605
BspACI	CCGC	3 cut(s)	187, 189, 574
BspANI	GGCC	4 cut(s)	130, 192, 249, 681
BspFNI	CGCG	2 cut(s)	57, 189
BspLI	GGNNCC	2 cut(s)	38, 120
BspPI	GGATC	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	96
BssECI	CCNNGG	5 cut(s)	43, 125, 187, 250, 592
BssMI	GATC	4 cut(s)	271, 379, 388, 605
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	632
Bst6I	CTCTTC	1 cut(s)	367
BstAFI	CTTAAG	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	700
BstDSI	CCRYGG	2 cut(s)	187, 250
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	2 cut(s)	57, 189
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	2 cut(s)	241, 327
BstKTI	GATC	4 cut(s)	274, 382, 391, 608
BstMBI	GATC	4 cut(s)	271, 379, 388, 605
BstMCI	CGRYCG	2 cut(s)	193, 598
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 127, 170, 179, 198, 633
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	4 cut(s)	43, 133, 536, 592
BstSFI	CTRYAG	1 cut(s)	628
BstSLI	GKGCMC	1 cut(s)	123
BstUI	CGCG	2 cut(s)	57, 189
BstV2I	GAAGAC	2 cut(s)	486, 534
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BstZI	CGGCCG	1 cut(s)	190
BsuRI	GGCC	4 cut(s)	130, 192, 249, 681
BtgI	CCRYGG	2 cut(s)	187, 250
BtrI	CACGTC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	2 cut(s)	241, 327
Cfr42I	CCGCGG	1 cut(s)	190
CseI	GACGC	1 cut(s)	102
CviAII	CATG	4 cut(s)	242, 372, 394, 484
DdeI	CTNAG	1 cut(s)	700
DpnI	GATC	4 cut(s)	273, 381, 390, 607
DpnII	GATC	4 cut(s)	271, 379, 388, 605
DraI	TTTAAA	1 cut(s)	688
EaeI	YGGCCR	3 cut(s)	190, 247, 679
EagI	CGGCCG	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
EclXI	CGGCCG	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	125
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	593
Eco52I	CGGCCG	1 cut(s)	190
Eco57I	CTGAAG	3 cut(s)	195, 348, 505
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	4 cut(s)	245, 375, 397, 487
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	4 cut(s)	241, 371, 393, 483
FauI	CCCGC	1 cut(s)	567
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	1 cut(s)	190
FspBI	CTAG	1 cut(s)	321
FspI	TGCGCA	1 cut(s)	240
GlaI	GCGC	2 cut(s)	240, 326
GluI	GCNGC	1 cut(s)	190
GsaI	CCCAGC	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	4 cut(s)	130, 192, 249, 681
HapII	CCGG	4 cut(s)	45, 538, 594, 658
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	2 cut(s)	241, 327
Hin1II	CATG	4 cut(s)	245, 375, 397, 487
Hin6I	GCGC	2 cut(s)	239, 325
HinP1I	GCGC	2 cut(s)	239, 325
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	1 cut(s)	578
HpaII	CCGG	4 cut(s)	45, 538, 594, 658
HphI	GGTGA	2 cut(s)	59, 565
Hpy166II	GTNNAC	4 cut(s)	254, 308, 353, 463
Hpy188I	TCNGA	2 cut(s)	331, 517
Hpy188III	TCNNGA	4 cut(s)	34, 167, 523, 615
Hpy8I	GTNNAC	4 cut(s)	254, 308, 353, 463
Hpy99I	CGWCG	1 cut(s)	402
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	3 cut(s)	143, 182, 494
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 127, 170, 179, 198, 633
HpyF3I	CTNAG	1 cut(s)	700
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	4 cut(s)	245, 375, 397, 487
HspAI	GCGC	2 cut(s)	239, 325
KspI	CCGCGG	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	271, 379, 388, 605
LmnI	GCTCC	2 cut(s)	332, 660
LweI	GCATC	4 cut(s)	151, 160, 169, 556
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	310
MalI	GATC	4 cut(s)	273, 381, 390, 607
MboI	GATC	4 cut(s)	271, 379, 388, 605
MboII	GAAGA	7 cut(s)	83, 170, 188, 252, 354, 491, 534
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	123, 593
MlsI	TGGCCA	1 cut(s)	681
MluCI	AATT	1 cut(s)	689
MluNI	TGGCCA	1 cut(s)	681
MlyI	GAGTC	1 cut(s)	572
MnlI	CCTC	9 cut(s)	50, 58, 122, 141, 219, 296, 370, 611, 666
Mox20I	TGGCCA	1 cut(s)	681
Mph1103I	ATGCAT	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	2 cut(s)	384, 687
Msp20I	TGGCCA	1 cut(s)	681
MspA1I	CMGCKG	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	383
MspI	CCGG	4 cut(s)	45, 538, 594, 658
MspR9I	CCNGG	4 cut(s)	45, 135, 538, 594
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	135
MvnI	CGCG	2 cut(s)	57, 189
MwoI	GCNNNNNNNGC	6 cut(s)	15, 127, 170, 179, 198, 633
NciI	CCSGG	3 cut(s)	45, 538, 594
NdeII	GATC	4 cut(s)	271, 379, 388, 605
NlaIII	CATG	4 cut(s)	245, 375, 397, 487
NlaIV	GGNNCC	2 cut(s)	38, 120
NsbI	TGCGCA	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	1 cut(s)	397
PceI	AGGCCT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	307
PctI	GAATGC	1 cut(s)	532
PkrI	GCNGC	1 cut(s)	191
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	38, 120
PsuI	RGATCY	1 cut(s)	379
SacII	CCGCGG	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	384, 687
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	4 cut(s)	271, 379, 388, 605
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	4 cut(s)	45, 135, 538, 594
SduI	GDGCHC	2 cut(s)	123, 593
SfaNI	GCATC	4 cut(s)	151, 160, 169, 556
SfcI	CTRYAG	1 cut(s)	628
Sfr303I	CCGCGG	1 cut(s)	190
SgrBI	CCGCGG	1 cut(s)	190
SmlI	CTYRAG	3 cut(s)	113, 223, 383
SmoI	CTYRAG	3 cut(s)	113, 223, 383
Sse9I	AATT	1 cut(s)	689
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	3 cut(s)	187, 189, 574
SspMI	CTAG	1 cut(s)	321
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	4 cut(s)	43, 133, 536, 592
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	632
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	301, 604
TasI	AATT	1 cut(s)	689
TauI	GCSGC	1 cut(s)	192
Tru1I	TTAA	2 cut(s)	384, 687
Tru9I	TTAA	2 cut(s)	384, 687
TscAI	CASTG	1 cut(s)	355
TspDTI	ATGAA	3 cut(s)	360, 492, 500
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	355
Vha464I	CTTAAG	1 cut(s)	383
XceI	RCATGY	1 cut(s)	397
XspI	CTAG	1 cut(s)	321
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.