Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007006

Physical Location & Seq

Genomic Coordinates Reverse (-)

36654446 .. 36659170

Gene Structure 4725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1287500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTTGGGAATCTGCCCGGTGATATACGCGAGAGAGAGGTGGAAGATTTGTTTTTCAAGGGCTGGTTATGGACGCATAGCCCATATTGACCTGAAGGTCCCCCCAAGGCCTCCTGGTTATGCATTTGTTGAGTTTGAAGATGCTCGTGATGCTGAAGATGCACTCCGTGGTCGTGATGGCTATGATTTTGATGGGCATCGTTTAAGAGTTGAACTTGCACATGGAGGGCGTGGGCATTCATCTTCTTCAGATCGTCATAGTAATTATAGTGGTGGTCGAGGTGGACGTGGGATGTCCAGGCGCTCAGATTATCGTGTGTTAGTCAGTGAACTTCCCCCTTCCGCTTCATGGCAAGATCTTAAGGATCATATGCGACGGGCGGGAGATGTCTGTTTCTCCCAAGTTTTTCGTGATGGTAGTGGTACAACAGGGATTGTAGACTACACAAACTTAGAAGATATGAAGTATGCGATCAAAAAGCTTGATGGCTCTGAGTTCCGAAATGCTTTTGACCGCCAATCTGTTCGCGTGAGGGAATATGATGCGAAGAGGGACTCGTCTAGGAGCCCTAGTCGTGGTCGATCTCATTCAAGAGGCAGGAGCTACAGTCGCAGTCGTAGTCCAAGTTATGGCCGGGGCAGAAGCAGGAGCAAGTCTCCAAAAACCAAATCTTCACGCCTCTCACCCGCTAGATCTCGATCAAGATCTGCTTCTCTCCCGCGTTCGCGATCAAGGTCTCGCTCTCCATCAGGATCACGATCAAGAAGCAGATCTCCAGTGCCTTCGAAACGCATTAGTAAAAGCCCGAAGAAGCACATTAGTAAAAGTCCAAAGAAGCGTAGTACCAGCAGGAGTCCAATCCGGAGCAGGAGCAGGAGCAAGAGTTTGTCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

Ndufs5 RRM_1

Protein Analysis

299

Amino Acids

33.63

Weight (kDa)

11.42

Isoelectric Point (pI)

103.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	22 - 69	7.9e-09	RNA recognition motif
RRM_1	PF00076	106 - 168	2.1e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT4G02430 AT4G02430 AT4G02430 AT4G02430
fragaria_vesca	FvH4_2g25670 FvH4_2g25670 FvH4_2g25670
malus_domestica	MD03G1287500.v1.1 MD11G1310700.v1.1
prunus_persica	Prupe.8G260600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293931
rosa_laevigata	RLG00000011915
rosa_multiflora	Rmu_sc0005647.1_g000008
rosa_roxburghii	Rroxscaffold_7G00173830
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6AG352500 Rh6BG359300 Rh6CG366600 Rh6DG352900
rosa_wichuraiana	Rw6G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccI	GTMKAC	1 cut(s)	438
AccII	CGCG	4 cut(s)	29, 528, 721, 727
AccIII	TCCGGA	1 cut(s)	861
AciI	CCGC	5 cut(s)	342, 380, 514, 687, 719
AclWI	GGATC	2 cut(s)	372, 760
AcoI	YGGCCR	1 cut(s)	631
AcuI	CTGAAG	3 cut(s)	113, 174, 231
AdeI	CACNNNGTG	1 cut(s)	167
AfaI	GTAC	2 cut(s)	424, 844
AfiI	CCNNNNNNNGG	3 cut(s)	348, 575, 629
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	4 cut(s)	57, 137, 212, 591
AjiI	CACGTC	1 cut(s)	287
AjnI	CCWGG	2 cut(s)	112, 296
AluBI	AGCT	2 cut(s)	481, 603
AluI	AGCT	2 cut(s)	481, 603
Alw26I	GTCTC	2 cut(s)	660, 741
AlwI	GGATC	2 cut(s)	372, 760
Aor13HI	TCCGGA	1 cut(s)	861
AoxI	GGCC	2 cut(s)	107, 631
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	2 cut(s)	17, 635
AsuHPI	GGTGA	2 cut(s)	31, 675
AsuII	TTCGAA	1 cut(s)	785
AvaII	GGWCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	569
BauI	CACGAG	1 cut(s)	144
BccI	CCATC	5 cut(s)	170, 185, 407, 479, 754
BciT130I	CCWGG	2 cut(s)	114, 298
BcnI	CCSGG	2 cut(s)	17, 635
BcoDI	GTCTC	2 cut(s)	660, 741
BfaI	CTAG	3 cut(s)	561, 570, 690
BfmI	CTRYAG	1 cut(s)	604
BfoI	RGCGCY	1 cut(s)	304
BfrI	CTTAAG	1 cut(s)	359
BglII	AGATCT	4 cut(s)	355, 692, 704, 770
Bme1390I	CCNGG	4 cut(s)	17, 114, 298, 635
Bme18I	GGWCC	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	99, 566
BmrFI	CCNGG	4 cut(s)	17, 114, 298, 635
BmsI	GCATC	5 cut(s)	130, 139, 148, 205, 532
BplI	GAGNNNNNCTC	2 cut(s)	640, 672
BpmI	CTGGAG	1 cut(s)	759
Bpu14I	TTCGAA	1 cut(s)	785
BpuMI	CCSGG	2 cut(s)	17, 635
BsaBI	GATNNNNATC	4 cut(s)	195, 697, 703, 757
BsaI	GGTCTC	1 cut(s)	741
BsaJI	CCNNGG	3 cut(s)	104, 166, 634
BsaWI	WCCGGW	1 cut(s)	861
BsaXI	ACNNNNNCTCC	5 cut(s)	556, 586, 592, 622, 868
Bsc4I	CCNNNNNNNGG	3 cut(s)	348, 575, 629
Bse1I	ACTGG	1 cut(s)	776
Bse8I	GATNNNNATC	4 cut(s)	195, 697, 703, 757
BseAI	TCCGGA	1 cut(s)	861
BseBI	CCWGG	2 cut(s)	114, 298
BseDI	CCNNGG	3 cut(s)	104, 166, 634
BseGI	GGATG	1 cut(s)	297
BseJI	GATNNNNATC	4 cut(s)	195, 697, 703, 757
BseLI	CCNNNNNNNGG	3 cut(s)	348, 575, 629
BseMII	CTCAG	2 cut(s)	318, 483
BseNI	ACTGG	1 cut(s)	776
Bsh1236I	CGCG	4 cut(s)	29, 528, 721, 727
BshFI	GGCC	2 cut(s)	109, 633
BsiSI	CCGG	3 cut(s)	17, 634, 862
BslFI	GGGAC	2 cut(s)	83, 566
BslI	CCNNNNNNNGG	3 cut(s)	348, 575, 629
BsmAI	GTCTC	2 cut(s)	660, 741
BsmFI	GGGAC	2 cut(s)	83, 566
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	109, 633
Bso31I	GGTCTC	1 cut(s)	741
Bsp119I	TTCGAA	1 cut(s)	785
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp13I	TCCGGA	1 cut(s)	861
Bsp68I	TCGCGA	1 cut(s)	727
BspACI	CCGC	5 cut(s)	342, 380, 514, 687, 719
BspANI	GGCC	2 cut(s)	109, 633
BspCNI	CTCAG	2 cut(s)	317, 484
BspEI	TCCGGA	1 cut(s)	861
BspFNI	CGCG	4 cut(s)	29, 528, 721, 727
BspLI	GGNNCC	2 cut(s)	99, 566
BspPI	GGATC	2 cut(s)	372, 760
BspT104I	TTCGAA	1 cut(s)	785
BspTI	CTTAAG	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	741
BsrI	ACTGG	1 cut(s)	776
BssECI	CCNNGG	3 cut(s)	104, 166, 634
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	114, 298
Bst4CI	ACNGT	2 cut(s)	608, 894
Bst6I	CTCTTC	1 cut(s)	542
BstAFI	CTTAAG	1 cut(s)	359
BstBI	TTCGAA	1 cut(s)	785
BstDEI	CTNAG	3 cut(s)	304, 451, 492
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	297
BstFNI	CGCG	4 cut(s)	29, 528, 721, 727
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	303
BstMAI	GTCTC	2 cut(s)	660, 741
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 158, 609
BstNI	CCWGG	2 cut(s)	114, 298
BstSCI	CCNGG	4 cut(s)	15, 112, 296, 633
BstSFI	CTRYAG	1 cut(s)	604
BstUI	CGCG	4 cut(s)	29, 528, 721, 727
BstX2I	RGATCY	4 cut(s)	355, 692, 704, 770
BstYI	RGATCY	4 cut(s)	355, 692, 704, 770
BsuRI	GGCC	2 cut(s)	109, 633
BtgI	CCRYGG	1 cut(s)	166
BtrI	CACGTC	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	2 cut(s)	331, 783
BtuMI	TCGCGA	1 cut(s)	727
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	97
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	423, 843
CviAII	CATG	2 cut(s)	221, 348
CviQI	GTAC	2 cut(s)	423, 843
DdeI	CTNAG	3 cut(s)	304, 451, 492
DraIII	CACNNNGTG	1 cut(s)	167
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
EaeI	YGGCCR	1 cut(s)	631
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	104
Eco147I	AGGCCT	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	569
Eco31I	GGTCTC	1 cut(s)	741
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	3 cut(s)	113, 174, 231
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRII	CCWGG	2 cut(s)	112, 296
EcoT14I	CCWWGG	1 cut(s)	104
EcoT22I	ATGCAT	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	2 cut(s)	224, 351
FalI	AAGNNNNNCTT	2 cut(s)	694, 726
FaqI	GGGAC	2 cut(s)	83, 566
FatI	CATG	2 cut(s)	220, 347
FauI	CCCGC	3 cut(s)	373, 694, 726
FauNDI	CATATG	1 cut(s)	369
FblI	GTMKAC	1 cut(s)	438
FokI	GGATG	1 cut(s)	304
FriOI	GRGCYC	1 cut(s)	569
FspBI	CTAG	3 cut(s)	561, 570, 690
GlaI	GCGC	1 cut(s)	302
GsuI	CTGGAG	1 cut(s)	759
HaeII	RGCGCY	1 cut(s)	304
HaeIII	GGCC	2 cut(s)	109, 633
HapII	CCGG	3 cut(s)	17, 634, 862
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	2 cut(s)	224, 351
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	3 cut(s)	9, 554, 853
HpaII	CCGG	3 cut(s)	17, 634, 862
HphI	GGTGA	2 cut(s)	31, 675
Hpy166II	GTNNAC	3 cut(s)	284, 329, 439
Hpy188I	TCNGA	4 cut(s)	250, 307, 493, 500
Hpy8I	GTNNAC	3 cut(s)	284, 329, 439
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	3 cut(s)	88, 348, 792
HpyCH4III	ACNGT	2 cut(s)	608, 894
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	122, 161, 218
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 158, 609
HpyF3I	CTNAG	3 cut(s)	304, 451, 492
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	2 cut(s)	224, 351
HspAI	GCGC	1 cut(s)	301
Kpn2I	TCCGGA	1 cut(s)	861
LmnI	GCTCC	6 cut(s)	564, 600, 648, 864, 870, 876
LweI	GCATC	5 cut(s)	130, 139, 148, 205, 532
MaeI	CTAG	3 cut(s)	561, 570, 690
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	1 cut(s)	888
MboII	GAAGA	9 cut(s)	55, 149, 167, 234, 237, 467, 559, 663, 820
MflI	RGATCY	4 cut(s)	355, 692, 704, 770
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	1 cut(s)	262
MlyI	GAGTC	2 cut(s)	548, 862
MnlI	CCTC	8 cut(s)	30, 120, 218, 272, 525, 543, 587, 689
Mph1103I	ATGCAT	1 cut(s)	124
MroI	TCCGGA	1 cut(s)	861
MseI	TTAA	2 cut(s)	203, 360
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	3 cut(s)	17, 634, 862
MspR9I	CCNGG	4 cut(s)	17, 114, 298, 635
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	2 cut(s)	114, 298
MvnI	CGCG	4 cut(s)	29, 528, 721, 727
MwoI	GCNNNNNNNGC	3 cut(s)	149, 158, 609
NciI	CCSGG	2 cut(s)	17, 635
NdeI	CATATG	1 cut(s)	369
NlaIII	CATG	2 cut(s)	224, 351
NlaIV	GGNNCC	2 cut(s)	99, 566
NmuCI	GTSAC	1 cut(s)	888
NruI	TCGCGA	1 cut(s)	727
NsiI	ATGCAT	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	785
PceI	AGGCCT	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	9
PflMI	CCANNNNNTGG	1 cut(s)	629
PleI	GAGTC	2 cut(s)	548, 861
PpsI	GAGTC	2 cut(s)	548, 861
PpuMI	RGGWCCY	1 cut(s)	97
Psp5II	RGGWCCY	1 cut(s)	97
Psp6I	CCWGG	2 cut(s)	112, 296
PspGI	CCWGG	2 cut(s)	112, 296
PspN4I	GGNNCC	2 cut(s)	99, 566
PspPI	GGNCC	1 cut(s)	97
PspPPI	RGGWCCY	1 cut(s)	97
PsuI	RGATCY	4 cut(s)	355, 692, 704, 770
RruI	TCGCGA	1 cut(s)	727
RsaI	GTAC	2 cut(s)	424, 844
RsaNI	GTAC	2 cut(s)	423, 843
SaqAI	TTAA	2 cut(s)	203, 360
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	2 cut(s)	548, 862
ScrFI	CCNGG	4 cut(s)	17, 114, 298, 635
SduI	GDGCHC	1 cut(s)	569
SetI	ASST	8 cut(s)	41, 93, 99, 283, 289, 483, 605, 737
SfaNI	GCATC	5 cut(s)	130, 139, 148, 205, 532
SfcI	CTRYAG	1 cut(s)	604
SfuI	TTCGAA	1 cut(s)	785
SinI	GGWCC	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	1 cut(s)	262
SseBI	AGGCCT	1 cut(s)	109
SsiI	CCGC	5 cut(s)	342, 380, 514, 687, 719
SspMI	CTAG	3 cut(s)	561, 570, 690
StuI	AGGCCT	1 cut(s)	109
StyD4I	CCNGG	4 cut(s)	15, 112, 296, 633
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	2 cut(s)	608, 894
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	4 cut(s)	277, 580, 697, 785
TasI	AATT	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	2 cut(s)	203, 360
Tru9I	TTAA	2 cut(s)	203, 360
TscAI	CASTG	2 cut(s)	331, 783
TseFI	GTSAC	1 cut(s)	888
Tsp45I	GTSAC	1 cut(s)	888
TspDTI	ATGAA	3 cut(s)	228, 336, 476
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	331, 783
Van91I	CCANNNNNTGG	1 cut(s)	629
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	3 cut(s)	561, 570, 690
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.