Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007006

Physical Location & Seq

Genomic Coordinates Reverse (-)

22038473 .. 22042096

Gene Structure 3624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G260600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAGCAGCCGTAGTACAAGCAGAACTCTCTATGTTGGGAATCTGCCTGGTGATATACGCGAGAGAGAGGTCGAAGATTTGTTTTTGAAGTATGGACGCATAGCCCATATTGACTTGAAGGTTCCCCCAAGGCCTCCTGGTTATGCATTTGTTGAGTTTGAAGATGCTCGTGATGCTGAAGATGCACTTCGTGGTCGTGATGGCTATGATTTTGATGGTCATCGTTTACGGGTTGAACTTGCACATGGAGGGCGTGGACATTCATCTTCGTCAGATCGTCATAGTAATTATAGTGGTGGTCGAGGTGGGCGTGGGATGTCCAGGCGCTCAGATTTTCGTGTGTTAGTCAGTGGACTACCCTCTTCAGCTTCATGGCAAGATCTTAAGGATCACATGCGACGGGCTGGAGATGTCTGTTTCTCCCAAGTTTTTCGTGATGGTAGTGGCACAACAGGGATTGTGGATTACACTAACTTTGACGACATGAAGTATGCGATCAAAAAGCTTGATGGCTCTGAGTTCCGGAATGCCTTTTCTCGCTCTTCTGTTCGTGTGAGGGAGTATGATTCGAAGCGGGACTCATCTAGGAGCCCTAGTCGTGGTAGATCTCATTCAAGAGGCAGGAGCTACAGTCGTAGTCGTAGTCGAAGTTATAGCCGGAGCAGAAGCAGGAGCAAGTCTCCGAAAACCAAATCTTCACGCCGCTCACCTGCTAGATCTCGATCGAGGTCTGCTTCTCCGCTTCGCTCGCGATCAAGATCTCGCTCTCCGTTAGGATCACGATCAAGAAGCAGATCTCCACTGCCTTCGAAACACATAAGTAAAAGCCCGAAGAAACACATAAGTAAAAGTCCAAAGAAGCGTAGTGCTAGCCGGAGTCCAAGCCGGAGCCGGAGCAGGAGCAGGAGTAGGAGTTTGTCACGGTATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

Ndufs5 RRM_1

Protein Analysis

311

Amino Acids

35.05

Weight (kDa)

11.54

Isoelectric Point (pI)

113.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT4G02430 AT4G02430 AT4G02430 AT4G02430
fragaria_vesca	FvH4_2g25670 FvH4_2g25670 FvH4_2g25670
malus_domestica	MD03G1287500.v1.1 MD11G1310700.v1.1
prunus_persica	Prupe.8G260600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293931
rosa_laevigata	RLG00000011915
rosa_multiflora	Rmu_sc0005647.1_g000008
rosa_roxburghii	Rroxscaffold_7G00173830
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6AG352500 Rh6BG359300 Rh6CG366600 Rh6DG352900
rosa_wichuraiana	Rw6G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	718
Acc36I	ACCTGC	1 cut(s)	718
AccBSI	CCGCTC	1 cut(s)	705
AccII	CGCG	2 cut(s)	60, 751
AccIII	TCCGGA	1 cut(s)	522
AciI	CCGC	3 cut(s)	574, 703, 740
AclWI	GGATC	2 cut(s)	396, 784
AcuI	CTGAAG	2 cut(s)	198, 348
AdeI	CACNNNGTG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	599
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	5 cut(s)	88, 118, 161, 236, 615
AjnI	CCWGG	3 cut(s)	46, 136, 320
AluBI	AGCT	3 cut(s)	368, 505, 627
AluI	AGCT	3 cut(s)	368, 505, 627
Alw26I	GTCTC	1 cut(s)	684
AlwI	GGATC	2 cut(s)	396, 784
Aor13HI	TCCGGA	1 cut(s)	522
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	62, 699
AsuII	TTCGAA	2 cut(s)	569, 809
AsuNHI	GCTAGC	1 cut(s)	869
BanII	GRGCYC	1 cut(s)	593
BauI	CACGAG	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	4 cut(s)	194, 209, 431, 503
BciT130I	CCWGG	3 cut(s)	48, 138, 322
BcoDI	GTCTC	1 cut(s)	684
BfaI	CTAG	4 cut(s)	585, 594, 714, 870
BfmI	CTRYAG	1 cut(s)	628
BfoI	RGCGCY	1 cut(s)	328
BfrI	CTTAAG	1 cut(s)	383
BfuAI	ACCTGC	1 cut(s)	718
BglII	AGATCT	5 cut(s)	379, 605, 716, 758, 794
BisI	GCNGC	2 cut(s)	7, 703
BlsI	GCNGC	2 cut(s)	8, 704
Bme1390I	CCNGG	3 cut(s)	48, 138, 322
BmiI	GGNNCC	3 cut(s)	123, 590, 890
BmrFI	CCNGG	3 cut(s)	48, 138, 322
BmsI	GCATC	3 cut(s)	154, 163, 172
BmtI	GCTAGC	1 cut(s)	873
BplI	GAGNNNNNCTC	2 cut(s)	664, 696
BpmI	CTGGAG	1 cut(s)	426
Bpu14I	TTCGAA	2 cut(s)	569, 809
BsaBI	GATNNNNATC	4 cut(s)	219, 721, 757, 781
BsaJI	CCNNGG	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	522
BsaXI	ACNNNNNCTCC	8 cut(s)	580, 610, 616, 646, 892, 898, 922, 928
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse8I	GATNNNNATC	4 cut(s)	219, 721, 757, 781
BseAI	TCCGGA	1 cut(s)	522
BseBI	CCWGG	3 cut(s)	48, 138, 322
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	321
BseJI	GATNNNNATC	4 cut(s)	219, 721, 757, 781
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMII	CTCAG	2 cut(s)	342, 507
BseXI	GCAGC	1 cut(s)	18
Bsh1236I	CGCG	2 cut(s)	60, 751
Bsh1285I	CGRYCG	1 cut(s)	725
BshFI	GGCC	1 cut(s)	133
BsiEI	CGRYCG	1 cut(s)	725
BsiSI	CCGG	5 cut(s)	523, 658, 874, 886, 892
BslFI	GGGAC	1 cut(s)	590
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	1 cut(s)	684
BsmFI	GGGAC	1 cut(s)	590
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	1 cut(s)	133
Bsp119I	TTCGAA	2 cut(s)	569, 809
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp13I	TCCGGA	1 cut(s)	522
Bsp68I	TCGCGA	1 cut(s)	751
BspACI	CCGC	3 cut(s)	574, 703, 740
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	2 cut(s)	341, 508
BspEI	TCCGGA	1 cut(s)	522
BspFNI	CGCG	2 cut(s)	60, 751
BspLI	GGNNCC	3 cut(s)	123, 590, 890
BspMI	ACCTGC	1 cut(s)	718
BspOI	GCTAGC	1 cut(s)	873
BspPI	GGATC	2 cut(s)	396, 784
BspQI	GCTCTTC	1 cut(s)	547
BspT104I	TTCGAA	2 cut(s)	569, 809
BspTI	CTTAAG	1 cut(s)	383
BsrBI	CCGCTC	1 cut(s)	705
BssECI	CCNNGG	1 cut(s)	128
BssSI	CACGAG	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	128
Bst2BI	CACGAG	1 cut(s)	168
Bst2UI	CCWGG	3 cut(s)	48, 138, 322
Bst4CI	ACNGT	2 cut(s)	632, 924
Bst6I	CTCTTC	2 cut(s)	367, 547
BstAFI	CTTAAG	1 cut(s)	383
BstBI	TTCGAA	2 cut(s)	569, 809
BstC8I	GCNNGC	2 cut(s)	749, 871
BstDEI	CTNAG	2 cut(s)	328, 516
BstF5I	GGATG	1 cut(s)	321
BstFNI	CGCG	2 cut(s)	60, 751
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstMAI	GTCTC	1 cut(s)	684
BstMCI	CGRYCG	1 cut(s)	725
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 182, 748
BstNI	CCWGG	3 cut(s)	48, 138, 322
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	3 cut(s)	46, 136, 320
BstSFI	CTRYAG	1 cut(s)	628
BstUI	CGCG	2 cut(s)	60, 751
BstV1I	GCAGC	1 cut(s)	18
BstX2I	RGATCY	5 cut(s)	379, 605, 716, 758, 794
BstYI	RGATCY	5 cut(s)	379, 605, 716, 758, 794
BsuRI	GGCC	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	800
BtsIMutI	CAGTG	2 cut(s)	355, 800
BtuMI	TCGCGA	1 cut(s)	751
BveI	ACCTGC	1 cut(s)	718
Cac8I	GCNNGC	2 cut(s)	749, 871
CfoI	GCGC	1 cut(s)	327
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	4 cut(s)	245, 372, 394, 484
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	2 cut(s)	328, 516
DraIII	CACNNNGTG	1 cut(s)	191
Eam1104I	CTCTTC	2 cut(s)	367, 547
EarI	CTCTTC	2 cut(s)	367, 547
Eco130I	CCWWGG	1 cut(s)	128
Eco147I	AGGCCT	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	593
Eco57I	CTGAAG	2 cut(s)	198, 348
EcoRII	CCWGG	3 cut(s)	46, 136, 320
EcoT14I	CCWWGG	1 cut(s)	128
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	4 cut(s)	248, 375, 397, 487
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	4 cut(s)	244, 371, 393, 483
FauI	CCCGC	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	7, 703
FokI	GGATG	1 cut(s)	328
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	2 cut(s)	7, 703
FspBI	CTAG	4 cut(s)	585, 594, 714, 870
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	2 cut(s)	7, 703
GsuI	CTGGAG	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	5 cut(s)	523, 658, 874, 886, 892
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	4 cut(s)	248, 375, 397, 487
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	4 cut(s)	40, 566, 578, 877
HpaII	CCGG	5 cut(s)	523, 658, 874, 886, 892
HphI	GGTGA	2 cut(s)	62, 699
Hpy166II	GTNNAC	3 cut(s)	227, 257, 353
Hpy188I	TCNGA	4 cut(s)	274, 331, 517, 684
Hpy8I	GTNNAC	3 cut(s)	227, 257, 353
Hpy99I	CGWCG	1 cut(s)	402
HpyAV	CCTTC	2 cut(s)	112, 816
HpyCH4III	ACNGT	2 cut(s)	632, 924
HpyCH4V	TGCA	3 cut(s)	146, 185, 242
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 182, 748
HpyF3I	CTNAG	2 cut(s)	328, 516
Hsp92II	CATG	4 cut(s)	248, 375, 397, 487
HspAI	GCGC	1 cut(s)	325
Kpn2I	TCCGGA	1 cut(s)	522
LguI	GCTCTTC	1 cut(s)	547
LmnI	GCTCC	7 cut(s)	588, 624, 660, 672, 888, 894, 900
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	3 cut(s)	154, 163, 172
MaeI	CTAG	4 cut(s)	585, 594, 714, 870
MaeIII	GTNAC	1 cut(s)	918
MbiI	CCGCTC	1 cut(s)	705
MboII	GAAGA	8 cut(s)	86, 173, 191, 258, 354, 534, 687, 844
MflI	RGATCY	5 cut(s)	379, 605, 716, 758, 794
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	1 cut(s)	286
MlyI	GAGTC	2 cut(s)	572, 886
MnlI	CCTC	8 cut(s)	61, 144, 242, 296, 370, 549, 611, 720
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	522
MseI	TTAA	1 cut(s)	384
MspCI	CTTAAG	1 cut(s)	383
MspI	CCGG	5 cut(s)	523, 658, 874, 886, 892
MspR9I	CCNGG	3 cut(s)	48, 138, 322
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	3 cut(s)	48, 138, 322
MvnI	CGCG	2 cut(s)	60, 751
MwoI	GCNNNNNNNGC	3 cut(s)	173, 182, 748
NheI	GCTAGC	1 cut(s)	869
NlaIII	CATG	4 cut(s)	248, 375, 397, 487
NlaIV	GGNNCC	3 cut(s)	123, 590, 890
NmuCI	GTSAC	1 cut(s)	918
NruI	TCGCGA	1 cut(s)	751
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	1 cut(s)	397
NspV	TTCGAA	2 cut(s)	569, 809
PaqCI	CACCTGC	1 cut(s)	718
PceI	AGGCCT	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	307
PctI	GAATGC	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	40, 566
PkrI	GCNGC	2 cut(s)	8, 704
Ple19I	CGATCG	1 cut(s)	725
PleI	GAGTC	2 cut(s)	572, 885
PpsI	GAGTC	2 cut(s)	572, 885
Psp6I	CCWGG	3 cut(s)	46, 136, 320
PspGI	CCWGG	3 cut(s)	46, 136, 320
PspN4I	GGNNCC	3 cut(s)	123, 590, 890
PsuI	RGATCY	5 cut(s)	379, 605, 716, 758, 794
PvuI	CGATCG	1 cut(s)	725
RruI	TCGCGA	1 cut(s)	751
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SapI	GCTCTTC	1 cut(s)	547
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	2 cut(s)	7, 703
SchI	GAGTC	2 cut(s)	572, 886
ScrFI	CCNGG	3 cut(s)	48, 138, 322
SduI	GDGCHC	1 cut(s)	593
SetI	ASST	8 cut(s)	72, 123, 307, 370, 507, 629, 712, 731
SfaNI	GCATC	3 cut(s)	154, 163, 172
SfcI	CTRYAG	1 cut(s)	628
SfuI	TTCGAA	2 cut(s)	569, 809
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	1 cut(s)	286
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	3 cut(s)	574, 703, 740
SspMI	CTAG	4 cut(s)	585, 594, 714, 870
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	3 cut(s)	46, 136, 320
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	632, 924
TaqI	TCGA	7 cut(s)	72, 301, 569, 646, 721, 725, 809
TasI	AATT	1 cut(s)	286
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	705
TfiI	GAWTC	2 cut(s)	40, 566
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	2 cut(s)	355, 807
TseFI	GTSAC	1 cut(s)	918
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	918
TspDTI	ATGAA	3 cut(s)	252, 360, 500
TspGWI	ACGGA	1 cut(s)	759
TspRI	CASTG	2 cut(s)	355, 807
Vha464I	CTTAAG	1 cut(s)	383
XceI	RCATGY	1 cut(s)	397
XspI	CTAG	4 cut(s)	585, 594, 714, 870
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.