Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005647.1

Orthogroup ID

OG0007006

Physical Location & Seq

Genomic Coordinates Forward (+)

35247 .. 42186

Gene Structure 6940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005647.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggcttccggctggggaatcaccgggaacaaagggcgctgctacgatttctgggtcgacttcagcgagtgcatgtctcgctgccgcgagcccaaggactgctctctcctccgcgaggactacctcgagtgcctccaccactccaaagagtttcaacggaggaatcgaatttacaaggaggagcagcgaaaactaagagcagctgcacgggccaaggagggtggagttcctttgatcccaatttcatctcatctcatctcatctcgcagcaaagcaggaggaggaggaggagacatgagtagccgtgccagcagaactctttatgtcgggaacctccccggtgatatacgcgagagagaggtggaagatttgttttacaagtatggacgcattgcccatattgacctcaaggtgcccccaaggcctcctggttatgcatttgttgagtttgaagatgctcgtgatgctgaagatgcaatccgcggccgtgatggctatgattttgatggcaatcgcttgagggttgaacttgcgcatggtggccgtggacattcttctgggggtgatcgtcatagagatagtggtggtggtggtggtggtcgtggtggacgtggaatgtctaggcgctccgattatcgtgtgttagtcagtggactaccctcttcagcttcatggcaagatcttaaggatcacatgcgacgggctggggatgtctgtttctcccaagttttccgtgatggtagtggcacaacaggagtagtggactacactaactatgaagacatgaagtatgcaataaaaaagcttgatggctctgacttcaggaatgctttttcccggtcttctgttcgggtgagagaatatgatgcgaagcgggactcgtctatgagccccggtcgtggtcgatctcattcaagaggtagaagctacagtcgcagtcgtagtagaagttatagccggagcagaagcaggagcaagtctcctaaacctaaatcttcacgccgctcgcctggtagatctcgatcaaggtctgggtctccaccccgctcacaatcaaagtctcgctccccgtcaggatcacgatcaagaagcagatctccactgccttcaaagcgcataagtaaaagcccgaagaaagacacaagtaaaagtccgaagaagcgcagtgccagccgaagtccaagcaggagcaggagcaagagtttgtcacggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

Ndufs5 RRM_1

Protein Analysis

404

Amino Acids

45.14

Weight (kDa)

10.74

Isoelectric Point (pI)

93.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT4G02430 AT4G02430 AT4G02430 AT4G02430
fragaria_vesca	FvH4_2g25670 FvH4_2g25670 FvH4_2g25670
malus_domestica	MD03G1287500.v1.1 MD11G1310700.v1.1
prunus_persica	Prupe.8G260600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293931
rosa_laevigata	RLG00000011915
rosa_multiflora	Rmu_sc0005647.1_g000008
rosa_roxburghii	Rroxscaffold_7G00173830
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6AG352500 Rh6BG359300 Rh6CG366600 Rh6DG352900
rosa_wichuraiana	Rw6G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	534
AccB1I	GGYRCC	1 cut(s)	412
AccBSI	CCGCTC	2 cut(s)	1005, 1047
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	4 cut(s)	87, 114, 351, 483
AciI	CCGC	7 cut(s)	85, 112, 481, 483, 874, 1003, 1045
AclWI	GGATC	3 cut(s)	229, 696, 1084
AcoI	YGGCCR	2 cut(s)	484, 541
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	4 cut(s)	46, 489, 648, 805
AfiI	CCNNNNNNNGG	2 cut(s)	115, 899
AflII	CTTAAG	1 cut(s)	683
AgsI	TTSAA	5 cut(s)	155, 452, 527, 915, 1110
AjiI	CACGTC	1 cut(s)	611
AjnI	CCWGG	2 cut(s)	427, 1009
AluBI	AGCT	4 cut(s)	203, 668, 805, 927
AluI	AGCT	4 cut(s)	203, 668, 805, 927
Alw26I	GTCTC	5 cut(s)	81, 285, 984, 1041, 1065
AlwI	GGATC	3 cut(s)	229, 696, 1084
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	4 cut(s)	210, 422, 484, 541
ApeKI	GCWGC	6 cut(s)	39, 81, 184, 200, 203, 267
ApoI	RAATTY	1 cut(s)	168
AspLEI	GCGC	5 cut(s)	39, 535, 627, 1116, 1164
AspS9I	GGNCC	1 cut(s)	210
AsuC2I	CCSGG	4 cut(s)	25, 339, 838, 894
AsuHPI	GGTGA	4 cut(s)	13, 353, 575, 865
AvaI	CYCGRG	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	412
BanII	GRGCYC	2 cut(s)	93, 893
BauI	CACGAG	1 cut(s)	459
BbsI	GAAGAC	2 cut(s)	786, 834
BbvI	GCAGC	6 cut(s)	26, 68, 190, 196, 212, 279
BccI	CCATC	4 cut(s)	485, 500, 731, 803
BceAI	ACGGC	3 cut(s)	288, 471, 528
BciT130I	CCWGG	2 cut(s)	429, 1011
BcnI	CCSGG	4 cut(s)	25, 339, 838, 894
BcoDI	GTCTC	5 cut(s)	81, 285, 984, 1041, 1065
BfaI	CTAG	1 cut(s)	621
BfmI	CTRYAG	1 cut(s)	928
BfoI	RGCGCY	2 cut(s)	40, 628
BfrI	CTTAAG	1 cut(s)	683
BglI	GCCNNNNNGGC	2 cut(s)	421, 492
BglII	AGATCT	3 cut(s)	679, 1016, 1094
BisI	GCNGC	9 cut(s)	40, 82, 85, 185, 201, 204, 268, 484, 1003
BlsI	GCNGC	9 cut(s)	41, 83, 86, 186, 202, 205, 269, 485, 1004
Bme1390I	CCNGG	6 cut(s)	25, 339, 429, 838, 894, 1011
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	332, 414
BmrFI	CCNGG	6 cut(s)	25, 339, 429, 838, 894, 1011
BmsI	GCATC	4 cut(s)	445, 454, 463, 856
BpiI	GAAGAC	2 cut(s)	786, 834
BplI	GAGNNNNNCTC	2 cut(s)	964, 996
BpuEI	CTTGAG	2 cut(s)	392, 538
BpuMI	CCSGG	4 cut(s)	25, 339, 838, 894
BsaBI	GATNNNNATC	3 cut(s)	510, 1021, 1081
BsaI	GGTCTC	1 cut(s)	1041
BsaJI	CCNNGG	7 cut(s)	93, 213, 337, 419, 481, 544, 892
BsaXI	ACNNNNNCTCC	1 cut(s)	1186
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 899
Bse3DI	GCAATG	1 cut(s)	390
Bse8I	GATNNNNATC	3 cut(s)	510, 1021, 1081
BseBI	CCWGG	2 cut(s)	429, 1011
BseDI	CCNNGG	7 cut(s)	93, 213, 337, 419, 481, 544, 892
BseGI	GGATG	1 cut(s)	715
BseJI	GATNNNNATC	3 cut(s)	510, 1021, 1081
BseLI	CCNNNNNNNGG	2 cut(s)	115, 899
BseMI	GCAATG	1 cut(s)	390
BseRI	GAGGAG	6 cut(s)	98, 194, 294, 297, 300, 303
BseSI	GKGCMC	1 cut(s)	417
BseX3I	CGGCCG	1 cut(s)	484
BseXI	GCAGC	6 cut(s)	26, 68, 190, 196, 212, 279
BseYI	CCCAGC	2 cut(s)	12, 704
BsgI	GTGCAG	1 cut(s)	189
Bsh1236I	CGCG	4 cut(s)	87, 114, 351, 483
Bsh1285I	CGRYCG	2 cut(s)	487, 898
BshFI	GGCC	4 cut(s)	212, 424, 486, 543
BshNI	GGYRCC	1 cut(s)	412
BsiEI	CGRYCG	2 cut(s)	487, 898
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	6 cut(s)	9, 24, 339, 838, 894, 958
BslFI	GGGAC	1 cut(s)	890
BslI	CCNNNNNNNGG	2 cut(s)	115, 899
BsmAI	GTCTC	5 cut(s)	81, 285, 984, 1041, 1065
BsmFI	GGGAC	1 cut(s)	890
BsmI	GAATGC	1 cut(s)	832
BsnI	GGCC	4 cut(s)	212, 424, 486, 543
Bso31I	GGTCTC	1 cut(s)	1041
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	3 cut(s)	93, 417, 893
BspACI	CCGC	7 cut(s)	85, 112, 481, 483, 874, 1003, 1045
BspANI	GGCC	4 cut(s)	212, 424, 486, 543
BspFNI	CGCG	4 cut(s)	87, 114, 351, 483
BspLI	GGNNCC	2 cut(s)	332, 414
BspPI	GGATC	3 cut(s)	229, 696, 1084
BspT107I	GGYRCC	1 cut(s)	412
BspTI	CTTAAG	1 cut(s)	683
BspTNI	GGTCTC	1 cut(s)	1041
BsrBI	CCGCTC	2 cut(s)	1005, 1047
BsrDI	GCAATG	1 cut(s)	390
BssECI	CCNNGG	7 cut(s)	93, 213, 337, 419, 481, 544, 892
BssSI	CACGAG	1 cut(s)	459
BssT1I	CCWWGG	3 cut(s)	93, 213, 419
Bst2BI	CACGAG	1 cut(s)	459
Bst2UI	CCWGG	2 cut(s)	429, 1011
Bst4CI	ACNGT	2 cut(s)	932, 1212
Bst6I	CTCTTC	1 cut(s)	667
BstAFI	CTTAAG	1 cut(s)	683
BstC8I	GCNNGC	4 cut(s)	89, 310, 1007, 1171
BstDEI	CTNAG	1 cut(s)	194
BstDSI	CCRYGG	2 cut(s)	481, 544
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	715
BstFNI	CGCG	4 cut(s)	87, 114, 351, 483
BstH2I	RGCGCY	2 cut(s)	40, 628
BstHHI	GCGC	5 cut(s)	39, 535, 627, 1116, 1164
BstMAI	GTCTC	5 cut(s)	81, 285, 984, 1041, 1065
BstMCI	CGRYCG	2 cut(s)	487, 898
BstNI	CCWGG	2 cut(s)	429, 1011
BstNSI	RCATGY	2 cut(s)	76, 697
BstSCI	CCNGG	6 cut(s)	23, 337, 427, 836, 892, 1009
BstSFI	CTRYAG	1 cut(s)	928
BstSLI	GKGCMC	1 cut(s)	417
BstUI	CGCG	4 cut(s)	87, 114, 351, 483
BstV1I	GCAGC	6 cut(s)	26, 68, 190, 196, 212, 279
BstV2I	GAAGAC	2 cut(s)	786, 834
BstX2I	RGATCY	3 cut(s)	679, 1016, 1094
BstYI	RGATCY	3 cut(s)	679, 1016, 1094
BstZI	CGGCCG	1 cut(s)	484
BsuRI	GGCC	4 cut(s)	212, 424, 486, 543
BtgI	CCRYGG	2 cut(s)	481, 544
BtrI	CACGTC	1 cut(s)	611
BtsCI	GGATG	1 cut(s)	715
BtsI	GCAGTG	2 cut(s)	1100, 1171
BtsIMutI	CAGTG	3 cut(s)	655, 1100, 1171
Cac8I	GCNNGC	4 cut(s)	89, 310, 1007, 1171
CfoI	GCGC	5 cut(s)	39, 535, 627, 1116, 1164
Cfr13I	GGNCC	1 cut(s)	210
Cfr42I	CCGCGG	1 cut(s)	484
CseI	GACGC	1 cut(s)	396
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	6 cut(s)	73, 295, 536, 672, 694, 784
DdeI	CTNAG	1 cut(s)	194
EaeI	YGGCCR	2 cut(s)	484, 541
EagI	CGGCCG	1 cut(s)	484
Eam1104I	CTCTTC	1 cut(s)	667
EarI	CTCTTC	1 cut(s)	667
EclXI	CGGCCG	1 cut(s)	484
Eco130I	CCWWGG	3 cut(s)	93, 213, 419
Eco147I	AGGCCT	1 cut(s)	424
Eco24I	GRGCYC	2 cut(s)	93, 893
Eco31I	GGTCTC	1 cut(s)	1041
Eco52I	CGGCCG	1 cut(s)	484
Eco57I	CTGAAG	4 cut(s)	46, 489, 648, 805
Eco88I	CYCGRG	1 cut(s)	125
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	427, 1009
EcoT14I	CCWWGG	3 cut(s)	93, 213, 419
EcoT22I	ATGCAT	1 cut(s)	439
EcoT38I	GRGCYC	2 cut(s)	93, 893
ErhI	CCWWGG	3 cut(s)	93, 213, 419
FaeI	CATG	6 cut(s)	76, 298, 539, 675, 697, 787
FaqI	GGGAC	1 cut(s)	890
FatI	CATG	6 cut(s)	72, 294, 535, 671, 693, 783
FauI	CCCGC	2 cut(s)	867, 1052
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	9 cut(s)	40, 82, 85, 185, 201, 204, 268, 484, 1003
FokI	GGATG	1 cut(s)	722
FriOI	GRGCYC	2 cut(s)	93, 893
Fsp4HI	GCNGC	9 cut(s)	40, 82, 85, 185, 201, 204, 268, 484, 1003
FspBI	CTAG	1 cut(s)	621
FspI	TGCGCA	1 cut(s)	534
GlaI	GCGC	5 cut(s)	38, 534, 626, 1115, 1163
GluI	GCNGC	9 cut(s)	40, 82, 85, 185, 201, 204, 268, 484, 1003
GsaI	CCCAGC	2 cut(s)	16, 708
HaeII	RGCGCY	2 cut(s)	40, 628
HaeIII	GGCC	4 cut(s)	212, 424, 486, 543
HapII	CCGG	6 cut(s)	9, 24, 339, 838, 894, 958
HgaI	GACGC	1 cut(s)	396
HhaI	GCGC	5 cut(s)	39, 535, 627, 1116, 1164
Hin1II	CATG	6 cut(s)	76, 298, 539, 675, 697, 787
Hin6I	GCGC	5 cut(s)	37, 533, 625, 1114, 1162
HinP1I	GCGC	5 cut(s)	37, 533, 625, 1114, 1162
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	803
HinfI	GANTC	3 cut(s)	18, 163, 878
HpaII	CCGG	6 cut(s)	9, 24, 339, 838, 894, 958
HphI	GGTGA	4 cut(s)	13, 353, 575, 865
Hpy166II	GTNNAC	5 cut(s)	58, 548, 608, 653, 763
Hpy188I	TCNGA	3 cut(s)	631, 817, 1155
Hpy188III	TCNNGA	8 cut(s)	328, 461, 823, 915, 1020, 1074, 1080, 1086
Hpy8I	GTNNAC	5 cut(s)	58, 548, 608, 653, 763
Hpy99I	CGWCG	1 cut(s)	702
HpyAV	CCTTC	1 cut(s)	1116
HpyCH4III	ACNGT	2 cut(s)	932, 1212
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	5 cut(s)	72, 206, 437, 476, 794
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	610
Hsp92II	CATG	6 cut(s)	76, 298, 539, 675, 697, 787
HspAI	GCGC	5 cut(s)	37, 533, 625, 1114, 1162
KspI	CCGCGG	1 cut(s)	484
LmnI	GCTCC	7 cut(s)	181, 632, 960, 972, 1070, 1188, 1194
Lsp1109I	GCAGC	6 cut(s)	26, 68, 190, 196, 212, 279
LweI	GCATC	4 cut(s)	445, 454, 463, 856
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	1 cut(s)	1206
MbiI	CCGCTC	2 cut(s)	1005, 1047
MflI	RGATCY	3 cut(s)	679, 1016, 1094
MhlI	GDGCHC	3 cut(s)	93, 417, 893
MluCI	AATT	2 cut(s)	168, 240
MlyI	GAGTC	1 cut(s)	872
Mph1103I	ATGCAT	1 cut(s)	439
MseI	TTAA	1 cut(s)	684
MspA1I	CMGCKG	2 cut(s)	203, 483
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	6 cut(s)	9, 24, 339, 838, 894, 958
MspR9I	CCNGG	6 cut(s)	25, 339, 429, 838, 894, 1011
Mva1269I	GAATGC	1 cut(s)	832
MvaI	CCWGG	2 cut(s)	429, 1011
MvnI	CGCG	4 cut(s)	87, 114, 351, 483
NciI	CCSGG	4 cut(s)	25, 339, 838, 894
NlaIII	CATG	6 cut(s)	76, 298, 539, 675, 697, 787
NlaIV	GGNNCC	2 cut(s)	332, 414
NmuCI	GTSAC	1 cut(s)	1206
NsbI	TGCGCA	1 cut(s)	534
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	2 cut(s)	76, 697
PaeR7I	CTCGAG	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	424
PcsI	WCGNNNNNNNCGW	3 cut(s)	63, 163, 607
PctI	GAATGC	1 cut(s)	832
PfeI	GAWTC	2 cut(s)	18, 163
PkrI	GCNGC	9 cut(s)	41, 83, 86, 186, 202, 205, 269, 485, 1004
PleI	GAGTC	1 cut(s)	872
PpsI	GAGTC	1 cut(s)	872
Psp6I	CCWGG	2 cut(s)	427, 1009
PspFI	CCCAGC	2 cut(s)	12, 704
PspGI	CCWGG	2 cut(s)	427, 1009
PspN4I	GGNNCC	2 cut(s)	332, 414
PspPI	GGNCC	1 cut(s)	210
PspXI	VCTCGAGB	1 cut(s)	125
PsuI	RGATCY	3 cut(s)	679, 1016, 1094
PvuII	CAGCTG	1 cut(s)	203
SacII	CCGCGG	1 cut(s)	484
SalI	GTCGAC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	9 cut(s)	40, 82, 85, 185, 201, 204, 268, 484, 1003
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	872
ScrFI	CCNGG	6 cut(s)	25, 339, 429, 838, 894, 1011
SduI	GDGCHC	3 cut(s)	93, 417, 893
SfaNI	GCATC	4 cut(s)	445, 454, 463, 856
SfcI	CTRYAG	1 cut(s)	928
Sfr274I	CTCGAG	1 cut(s)	125
Sfr303I	CCGCGG	1 cut(s)	484
SgrBI	CCGCGG	1 cut(s)	484
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	4 cut(s)	125, 407, 517, 683
SmoI	CTYRAG	4 cut(s)	125, 407, 517, 683
Sse9I	AATT	2 cut(s)	168, 240
SseBI	AGGCCT	1 cut(s)	424
SsiI	CCGC	7 cut(s)	85, 112, 481, 483, 874, 1003, 1045
SspMI	CTAG	1 cut(s)	621
StuI	AGGCCT	1 cut(s)	424
StyD4I	CCNGG	6 cut(s)	23, 337, 427, 836, 892, 1009
StyI	CCWWGG	3 cut(s)	93, 213, 419
TaaI	ACNGT	2 cut(s)	932, 1212
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	5 cut(s)	57, 126, 166, 904, 1021
TasI	AATT	2 cut(s)	168, 240
TauI	GCSGC	3 cut(s)	87, 486, 1005
TfiI	GAWTC	2 cut(s)	18, 163
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	3 cut(s)	655, 1107, 1171
TseFI	GTSAC	1 cut(s)	1206
TseI	GCWGC	6 cut(s)	39, 81, 184, 200, 203, 267
Tsp45I	GTSAC	1 cut(s)	1206
TspDTI	ATGAA	4 cut(s)	234, 660, 792, 800
TspGWI	ACGGA	2 cut(s)	172, 722
TspRI	CASTG	3 cut(s)	655, 1107, 1171
Vha464I	CTTAAG	1 cut(s)	683
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	2 cut(s)	76, 697
XhoI	CTCGAG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	57
XspI	CTAG	1 cut(s)	621
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.