Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007006

Physical Location & Seq

Genomic Coordinates Forward (+)

626639 .. 629993

Gene Structure 3355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAGCAGTCGTTCGAGTAGAACCGTGTACGTCGGAAACCTTCCTGGCGATATCCGTGAGAGAGAGGTCGAAGATTTGTTCAGTAAGTATGGACCTGTTGTTCAAATTGATTTGAAGGTTCCTCCAAGGCCTCCTGGTTATGCATTCGTTGAGTTTGATGATGCTCGGGATGCTGAAGATGCTATTCATGGTCGTGATGGCTATGACTTTGATGGGCATCGTTTGAGGGTGGAATTGGCGCATGGTGGGAGGCGTTCATCAGATGATACTCGGGGTAGTTTCAATGGTGGTGGCCGTGGTGGTGGTCGCGGCCGTGGTGATGGTGGTAGTCGTGGGCCATCTAGGAGATCAGAGTTTCGTGTTCTAGTCACAGGCTTGCCTTCATCTGCTTCTTGGCAAGATCTCAAGGATCACATGCGTAAAGGAGGCGATGTCTGTTTCTCGCAAGTGTACCGTGATGCTAGAGGGACAACTGGAGTTGTTGATTACACCTGCTATGAGGACATGAAGTATGCGCTGAAAAAGCTCGACGACACAGAGTTTCGAAATGCGTTTTCGAATGGATATGTCCGGGTTAGAGAATATGATTCAAGGAAGGATTCTAGGAGTCCTAGCCGGGGAAGATCCTATTCTAAGAGCCGCAGCCGCAGCCGTGGACGAAGCGTGAGCCGAAGCAGGAGCAGAAGCAGGAGCAGGAGCAGAAGTCCCAAGGCAAAGTCTTCACGTAGGTCCCCTGCAAAATCTACATCAAGATCTCCTGGCCCCCGCTCGAAGTCAAGGTCACCGTCTCCAAGAAGATCGCGTTCAAGATCAAGATCTCCTCTACCTTCTGTTCAGAAGGAAGGAAGCAAGAGCCCTAGCAAGCCAAGTCCAGCCAAGAGTCCTATCCACACTAGGAGTCCATCGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

Ndufs5 RRM_1

Protein Analysis

303

Amino Acids

33.73

Weight (kDa)

11.06

Isoelectric Point (pI)

98.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	3.5e-19	RNA recognition motif
RRM_1	PF00076	121 - 183	9.7e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT1G02840 AT4G02430 AT4G02430 AT4G02430 AT4G02430
fragaria_vesca	FvH4_2g25670 FvH4_2g25670 FvH4_2g25670
malus_domestica	MD03G1287500.v1.1 MD11G1310700.v1.1
prunus_persica	Prupe.8G260600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293931
rosa_laevigata	RLG00000011915
rosa_multiflora	Rmu_sc0005647.1_g000008
rosa_roxburghii	Rroxscaffold_7G00173830
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6AG352500 Rh6BG359300 Rh6CG366600 Rh6DG352900
rosa_wichuraiana	Rw6G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	500
Acc36I	ACCTGC	1 cut(s)	500
AccBSI	CCGCTC	1 cut(s)	768
AccII	CGCG	2 cut(s)	309, 802
AciI	CCGC	4 cut(s)	309, 640, 646, 766
AclWI	GGATC	2 cut(s)	417, 618
AcoI	YGGCCR	2 cut(s)	292, 310
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	29, 452
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	5 cut(s)	104, 115, 283, 591, 807
AjnI	CCWGG	3 cut(s)	43, 133, 757
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	1 cut(s)	526
AluI	AGCT	1 cut(s)	526
Alw26I	GTCTC	1 cut(s)	792
AlwI	GGATC	2 cut(s)	417, 618
Ama87I	CYCGRG	2 cut(s)	165, 270
AoxI	GGCC	5 cut(s)	128, 292, 310, 335, 760
ApeKI	GCWGC	2 cut(s)	642, 648
ArsI	GACNNNNNNTTYG	2 cut(s)	764, 796
AspLEI	GCGC	2 cut(s)	241, 517
AspS9I	GGNCC	4 cut(s)	92, 335, 729, 761
AsuC2I	CCSGG	2 cut(s)	572, 617
AsuHPI	GGTGA	2 cut(s)	329, 774
AsuII	TTCGAA	2 cut(s)	544, 557
AvaI	CYCGRG	2 cut(s)	165, 270
AvaII	GGWCC	2 cut(s)	92, 729
BanII	GRGCYC	1 cut(s)	857
BbsI	GAAGAC	1 cut(s)	711
BbvI	GCAGC	2 cut(s)	654, 660
BccI	CCATC	5 cut(s)	191, 206, 314, 346, 910
BceAI	ACGGC	3 cut(s)	279, 297, 636
BciT130I	CCWGG	3 cut(s)	45, 135, 759
BcnI	CCSGG	2 cut(s)	572, 617
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	7 cut(s)	342, 365, 462, 603, 612, 858, 894
BfuAI	ACCTGC	1 cut(s)	500
BglII	AGATCT	3 cut(s)	400, 752, 815
BisI	GCNGC	5 cut(s)	310, 640, 643, 646, 649
BlsI	GCNGC	5 cut(s)	311, 641, 644, 647, 650
Bme1390I	CCNGG	5 cut(s)	45, 135, 572, 617, 759
Bme18I	GGWCC	2 cut(s)	92, 729
BmeT110I	CYCGRG	2 cut(s)	165, 270
BmgT120I	GGNCC	4 cut(s)	92, 335, 729, 761
BmiI	GGNNCC	3 cut(s)	120, 731, 763
BmrFI	CCNGG	5 cut(s)	45, 135, 572, 617, 759
BmsI	GCATC	5 cut(s)	151, 160, 169, 226, 448
BpiI	GAAGAC	1 cut(s)	711
BpmI	CTGGAG	1 cut(s)	495
Bpu14I	TTCGAA	2 cut(s)	544, 557
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	2 cut(s)	572, 617
BsaAI	YACGTR	1 cut(s)	725
BsaBI	GATNNNNATC	2 cut(s)	216, 814
BsaJI	CCNNGG	6 cut(s)	125, 295, 313, 616, 652, 708
BsaXI	ACNNNNNCTCC	4 cut(s)	417, 447, 688, 718
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse1I	ACTGG	1 cut(s)	478
Bse8I	GATNNNNATC	2 cut(s)	216, 814
BseBI	CCWGG	3 cut(s)	45, 135, 759
BseDI	CCNNGG	6 cut(s)	125, 295, 313, 616, 652, 708
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	2 cut(s)	216, 814
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	810
BseX3I	CGGCCG	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	654, 660
Bsh1236I	CGCG	2 cut(s)	309, 802
Bsh1285I	CGRYCG	1 cut(s)	313
BshFI	GGCC	5 cut(s)	130, 294, 312, 337, 762
BsiEI	CGRYCG	1 cut(s)	313
BsiHKCI	CYCGRG	2 cut(s)	165, 270
BsiSI	CCGG	2 cut(s)	571, 616
BslFI	GGGAC	3 cut(s)	481, 690, 715
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	1 cut(s)	792
BsmBI	CGTCTC	1 cut(s)	792
BsmFI	GGGAC	3 cut(s)	481, 690, 715
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	5 cut(s)	130, 294, 312, 337, 762
BsoBI	CYCGRG	2 cut(s)	165, 270
Bsp119I	TTCGAA	2 cut(s)	544, 557
Bsp1286I	GDGCHC	1 cut(s)	857
Bsp143I	GATC	8 cut(s)	347, 400, 409, 623, 752, 797, 809, 815
BspACI	CCGC	4 cut(s)	309, 640, 646, 766
BspANI	GGCC	5 cut(s)	130, 294, 312, 337, 762
BspFNI	CGCG	2 cut(s)	309, 802
BspLI	GGNNCC	3 cut(s)	120, 731, 763
BspMI	ACCTGC	1 cut(s)	500
BspPI	GGATC	2 cut(s)	417, 618
BspT104I	TTCGAA	2 cut(s)	544, 557
BsrBI	CCGCTC	1 cut(s)	768
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	6 cut(s)	125, 295, 313, 616, 652, 708
BssMI	GATC	8 cut(s)	347, 400, 409, 623, 752, 797, 809, 815
BssT1I	CCWWGG	2 cut(s)	125, 708
Bst2UI	CCWGG	3 cut(s)	45, 135, 759
Bst4CI	ACNGT	3 cut(s)	25, 455, 786
BstBAI	YACGTR	1 cut(s)	725
BstBI	TTCGAA	2 cut(s)	544, 557
BstC8I	GCNNGC	2 cut(s)	377, 863
BstDEI	CTNAG	1 cut(s)	633
BstDSI	CCRYGG	3 cut(s)	295, 313, 652
BstEII	GGTNACC	1 cut(s)	780
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	2 cut(s)	309, 802
BstHHI	GCGC	2 cut(s)	241, 517
BstKTI	GATC	8 cut(s)	350, 403, 412, 626, 755, 800, 812, 818
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	8 cut(s)	347, 400, 409, 623, 752, 797, 809, 815
BstMCI	CGRYCG	1 cut(s)	313
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 179, 523, 645, 648
BstNI	CCWGG	3 cut(s)	45, 135, 759
BstNSI	RCATGY	1 cut(s)	418
BstPI	GGTNACC	1 cut(s)	780
BstSCI	CCNGG	5 cut(s)	43, 133, 570, 615, 757
BstUI	CGCG	2 cut(s)	309, 802
BstV1I	GCAGC	2 cut(s)	654, 660
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	4 cut(s)	400, 623, 752, 815
BstYI	RGATCY	4 cut(s)	400, 623, 752, 815
BstZI	CGGCCG	1 cut(s)	310
BsuRI	GGCC	5 cut(s)	130, 294, 312, 337, 762
BtgI	CCRYGG	3 cut(s)	295, 313, 652
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	175
BveI	ACCTGC	1 cut(s)	500
Cac8I	GCNNGC	2 cut(s)	377, 863
CfoI	GCGC	2 cut(s)	241, 517
Cfr13I	GGNCC	4 cut(s)	92, 335, 729, 761
Csp6I	GTAC	2 cut(s)	28, 451
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviAII	CATG	4 cut(s)	188, 242, 415, 505
CviQI	GTAC	2 cut(s)	28, 451
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	8 cut(s)	349, 402, 411, 625, 754, 799, 811, 817
DpnII	GATC	8 cut(s)	347, 400, 409, 623, 752, 797, 809, 815
EaeI	YGGCCR	2 cut(s)	292, 310
EagI	CGGCCG	1 cut(s)	310
EclXI	CGGCCG	1 cut(s)	310
Eco130I	CCWWGG	2 cut(s)	125, 708
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	857
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	2 cut(s)	92, 729
Eco52I	CGGCCG	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	195
Eco88I	CYCGRG	2 cut(s)	165, 270
Eco91I	GGTNACC	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	729
EcoO65I	GGTNACC	1 cut(s)	780
EcoRII	CCWGG	3 cut(s)	43, 133, 757
EcoRV	GATATC	1 cut(s)	52
EcoT14I	CCWWGG	2 cut(s)	125, 708
EcoT22I	ATGCAT	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	857
ErhI	CCWWGG	2 cut(s)	125, 708
Esp3I	CGTCTC	1 cut(s)	792
FaeI	CATG	4 cut(s)	191, 245, 418, 508
FaqI	GGGAC	3 cut(s)	481, 690, 715
FatI	CATG	4 cut(s)	187, 241, 414, 504
FauI	CCCGC	1 cut(s)	773
Fnu4HI	GCNGC	5 cut(s)	310, 640, 643, 646, 649
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	857
Fsp4HI	GCNGC	5 cut(s)	310, 640, 643, 646, 649
FspBI	CTAG	7 cut(s)	342, 365, 462, 603, 612, 858, 894
GlaI	GCGC	2 cut(s)	240, 516
GluI	GCNGC	5 cut(s)	310, 640, 643, 646, 649
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	5 cut(s)	130, 294, 312, 337, 762
HapII	CCGG	2 cut(s)	571, 616
HhaI	GCGC	2 cut(s)	241, 517
Hin1II	CATG	4 cut(s)	191, 245, 418, 508
Hin6I	GCGC	2 cut(s)	239, 515
HinP1I	GCGC	2 cut(s)	239, 515
HinfI	GANTC	5 cut(s)	587, 599, 607, 880, 898
HpaII	CCGG	2 cut(s)	571, 616
HphI	GGTGA	2 cut(s)	329, 774
Hpy166II	GTNNAC	3 cut(s)	28, 451, 656
Hpy188I	TCNGA	4 cut(s)	35, 262, 352, 837
Hpy188III	TCNNGA	5 cut(s)	167, 194, 750, 807, 813
Hpy8I	GTNNAC	3 cut(s)	28, 451, 656
Hpy99I	CGWCG	2 cut(s)	35, 533
HpyAV	CCTTC	7 cut(s)	50, 109, 390, 589, 832, 836, 837
HpyCH4III	ACNGT	3 cut(s)	25, 455, 786
HpyCH4IV	ACGT	2 cut(s)	30, 724
HpyCH4V	TGCA	2 cut(s)	143, 737
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 179, 523, 645, 648
HpyF3I	CTNAG	1 cut(s)	633
HpySE526I	ACGT	2 cut(s)	30, 724
Hsp92II	CATG	4 cut(s)	191, 245, 418, 508
HspAI	GCGC	2 cut(s)	239, 515
Kzo9I	GATC	8 cut(s)	347, 400, 409, 623, 752, 797, 809, 815
LmnI	GCTCC	3 cut(s)	678, 690, 696
Lsp1109I	GCAGC	2 cut(s)	654, 660
LweI	GCATC	5 cut(s)	151, 160, 169, 226, 448
MaeI	CTAG	7 cut(s)	342, 365, 462, 603, 612, 858, 894
MaeII	ACGT	2 cut(s)	30, 724
MaeIII	GTNAC	2 cut(s)	367, 780
MalI	GATC	8 cut(s)	349, 402, 411, 625, 754, 799, 811, 817
MbiI	CCGCTC	1 cut(s)	768
MboI	GATC	8 cut(s)	347, 400, 409, 623, 752, 797, 809, 815
MboII	GAAGA	5 cut(s)	83, 188, 633, 711, 807
MflI	RGATCY	4 cut(s)	400, 623, 752, 815
MhlI	GDGCHC	1 cut(s)	857
MluCI	AATT	2 cut(s)	105, 233
MlyI	GAGTC	3 cut(s)	616, 889, 907
MmeI	TCCRAC	1 cut(s)	13
Mph1103I	ATGCAT	1 cut(s)	145
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	2 cut(s)	571, 616
MspR9I	CCNGG	5 cut(s)	45, 135, 572, 617, 759
Mva1269I	GAATGC	1 cut(s)	143
MvaI	CCWGG	3 cut(s)	45, 135, 759
MvnI	CGCG	2 cut(s)	309, 802
MwoI	GCNNNNNNNGC	5 cut(s)	170, 179, 523, 645, 648
NciI	CCSGG	2 cut(s)	572, 617
NdeII	GATC	8 cut(s)	347, 400, 409, 623, 752, 797, 809, 815
NlaIII	CATG	4 cut(s)	191, 245, 418, 508
NlaIV	GGNNCC	3 cut(s)	120, 731, 763
NmuCI	GTSAC	2 cut(s)	367, 780
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	1 cut(s)	418
NspV	TTCGAA	2 cut(s)	544, 557
PaqCI	CACCTGC	1 cut(s)	500
PceI	AGGCCT	1 cut(s)	130
PctI	GAATGC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	587, 599
PkrI	GCNGC	5 cut(s)	311, 641, 644, 647, 650
PleI	GAGTC	3 cut(s)	615, 888, 906
PpsI	GAGTC	3 cut(s)	615, 888, 906
Ppu21I	YACGTR	1 cut(s)	725
PpuMI	RGGWCCY	1 cut(s)	729
Psp5II	RGGWCCY	1 cut(s)	729
Psp6I	CCWGG	3 cut(s)	43, 133, 757
PspEI	GGTNACC	1 cut(s)	780
PspGI	CCWGG	3 cut(s)	43, 133, 757
PspN4I	GGNNCC	3 cut(s)	120, 731, 763
PspPI	GGNCC	4 cut(s)	92, 335, 729, 761
PspPPI	RGGWCCY	1 cut(s)	729
PsuI	RGATCY	4 cut(s)	400, 623, 752, 815
RsaI	GTAC	2 cut(s)	29, 452
RsaNI	GTAC	2 cut(s)	28, 451
RseI	CAYNNNNRTG	1 cut(s)	192
SatI	GCNGC	5 cut(s)	310, 640, 643, 646, 649
Sau3AI	GATC	8 cut(s)	347, 400, 409, 623, 752, 797, 809, 815
Sau96I	GGNCC	4 cut(s)	92, 335, 729, 761
SchI	GAGTC	3 cut(s)	616, 889, 907
ScrFI	CCNGG	5 cut(s)	45, 135, 572, 617, 759
SduI	GDGCHC	1 cut(s)	857
SfaNI	GCATC	5 cut(s)	151, 160, 169, 226, 448
SfuI	TTCGAA	2 cut(s)	544, 557
SinI	GGWCC	2 cut(s)	92, 729
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	2 cut(s)	105, 233
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	4 cut(s)	309, 640, 646, 766
SspMI	CTAG	7 cut(s)	342, 365, 462, 603, 612, 858, 894
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	5 cut(s)	43, 133, 570, 615, 757
StyI	CCWWGG	2 cut(s)	125, 708
TaaI	ACNGT	3 cut(s)	25, 455, 786
TaiI	ACGT	2 cut(s)	33, 727
TaqI	TCGA	7 cut(s)	14, 69, 528, 544, 557, 770, 905
TasI	AATT	2 cut(s)	105, 233
TauI	GCSGC	3 cut(s)	312, 642, 648
TfiI	GAWTC	2 cut(s)	587, 599
TseFI	GTSAC	2 cut(s)	367, 780
TseI	GCWGC	2 cut(s)	642, 648
Tsp45I	GTSAC	2 cut(s)	367, 780
TspDTI	ATGAA	4 cut(s)	176, 246, 372, 521
TspGWI	ACGGA	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	92, 729
XceI	RCATGY	1 cut(s)	418
XspI	CTAG	7 cut(s)	342, 365, 462, 603, 612, 858, 894
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.