Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015967

Physical Location & Seq

Genomic Coordinates Forward (+)

20759876 .. 20766205

Gene Structure 6330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25691.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3084 bp

ATGGCGTCTCCGCCGTCCCCAACGTCGTCGTGCAGCTCTGCGCGCTCGTCGACATTTGCGTCCTACAAATTCTCCGACCTTCCGGTGACGGCGCTCCGGGAGAAGATCGTCGAGAAAATCCTCGATAATCGCGTCACTCTAATCGTCGGCGAGACCGGTTGCGGTAAAAGCTCGCAAATACCGCAGTTTCTACTGGAAGCGAATGTGAAGCCAATTCTATGTACACAGCCTAGGCGATTTGCGGTAGTAGCTGTTGCGAAAATGGTTGCACAAGCTCGTAACAGTGAGCTTGGTGGAGAGGTTGGATATCACATAGGCCACTCAAAGCACATGTCACCAAGATCAGTGATTGTTTTCAAAACTGCTGGAGTTTTATTGGACGAAATGCGGGACAAGGGGACGCATGCGCTTGATTACAAGGTCATTGTTCTTGATGAAGTGCATGAAAGATCTGTGGAGTCTGATCTTGTTCTTGTTTGTCTGAAGCAGTTTATGATGAAGAACAATAACTTGAGGGTGGTGTTGATGTCTGCAACTGCTGATATTCAAAGGTACAAGGATTACTTTAAGGATCTTGGCAGGGACGAACGAGTGGAAGTGGTTGCAATCCCTAACTCCGGCCAGAAAACCATTTTTCAGAAAAGGGTTTCTTATCTCGAAGAGGTGGCCGATCTTCTCAACATCGATCCGGAGTCGCTTTCTTTGAGATATTGTTCAGGAATAACTCCTTCATTGTCTAAAGCTGATATTGAGCCTGAAGTACATAGTATTATTCATCAACTGGTGTTGCATATACACAAGCAGGAGCCTGACATTGAAAAGAGCATTTTGATTTTTCTTCCAACATACTATGCCCTGGAGCAGCAATGGTTCCTTCTGAAGCCTCTCAGCTCATCTTTTAAAGTTCACATCTTACATAGCAGCATTGATACTGAACAAGCTCTCATGACCATGAAGATCTGGAAATCCCATCGCAAAGTGATACTGGCCACAAATATTGCTGAATCATCAGTAACAATTCCCCAGGTGGCTTATGTTATTGATTCATGCCGATCTTTACAAGTCTTCTGGAATGCTGATGAGAAAAAGGAATGTGCAAAACTTGTTTGGGTTTCTAAGTCTCAGGCTGATCAGCGTAGAGGGAGAACGGGTCGAACATGTGATGGCCAGATTTATCGGTTGGTTACTCGACCATTTTACGGCAAGCTTGAGGATTACGAAGGTCCCTCGATACTGAGGTTATCATTAAGGATGCAAGTGCTTCACATTTGCTGCTCTGATTCCAAAGCTATTAATGATCCCAAGGCCTTGTTGCAGAAGGCCTTAGATCCACCACCTTCTGATGTCGTTGAAGAAGCGTTGAATTTGCTGGTTCATATGCATGCATTGGAAAGAATATCTCCGAGGGGTCGGTATGAGCCTACATTTTATGGGCGATTGCTGGCCAGTTTTTCATTGTCTTTCGATGCCTCTGTAGTGGTACTTAAGTTTGGAGACGTTGGAATGCTGCGCGAAGGCATTCTTCTGGGCATTTTGATGGATACACAACCTCTGCCTATTCTTCGTCCTTTTGGAGATGAACTTCTGTGTTCGGAATATGCTGATAGCTACTTTAATGGAGATGATTACATTACTCGCATAACCGGAAAGAAGGAAACAGCATTCATGGGAAACTTGTGTGCATATCAATTTTGGCAACGTGTCTTCAAGGATAAGCTCCGTGTTGAGAATTTGAAGCAACTTCTTCAGTTCGATGTGACAAAAGCTACTAAATCGGATCTCCCCAAGATGGAAGACTGGTGCTCTTTCCATAATCTTGTGCACTCATCACTGAATCATGTCTCTGAAATATATGAAGACATTCTTCATTCAGTGCACCGCTTCCGGCCCAAGTTTTTGTCCACATCTAATGGCCTACCACCCTACTATGATCCGTACGAATACGAGCATACATGCATTCTTACCTGTCAACAACCAAATGGAGATACAAATGCTCTTGATACCGGCAATAGGCATCTTGAGCCATCTGGTGAAACAACAAAATGTGTTGCTGTACCTTTTGTTGCTTCAGATCACTTCCGAAAGAATGATGTGGCTAAAAAGTTGACAACGATAGTGAAACAGATAAGAATGCAGCATACCGAAGATGCATGGAGTAATCAGGATTTAAATGTTGATCATGATTATTATATTGATGGGGAGGCTCCTGTTTGTATTTATTATATTAATGGGTTCTGCAAATGGGGCAGTGAATGCAGGTTTTCTCATTCACTCAAAGGACAAAGAACCCCGTGCAAATTTTTCTATACTCTCCAGGGTTGTCGAAACGGAGAGTCATGCTTGTTTTCTCATAACGAGAGTCCGTTACTAACATCATCCAGCTCATCTACCTTATCCAGCTCAAACTTTTGTGTGCCAGAAGAAAGCGAAGCTACATCTCTGTCCCTATTAAAACTGTTTTCCATTTCTTCAGATGGATACCTCCTTTTACTGGATGACACCAATCTACATTTTACCTCAAATTTCGCAAGCTTTCATGAACCATCCAAAATAATCACTACAACTTCTTTGTCAGACACATCTATATTTGACCCTTCACTGACGGGTGTCAAAATCTTTTGGGGTCTTCATCACCCATATCAGACCATCATTTCCAAAGACGGAGGGAACCAGATTCCTTGGAAAGAAGTTAAGTGCATGCTCTGGTTTCCTAATCTTGAAAGTTTCAGTGAGAATTTGGATAGACAAAAAGCTCACTTACAGATTTTCTTTGAGTATCTTGCTGTTCGAATGTTGGGTGATGCCCTGGAAATGCGAGTCATTCTCACCATGAACAATATCAGGTTTTCACAGTTGCAGGTGGAGAAGTTGGGCAGGGATTGCTTTTTCTTCCTAACAGAGTCATTCCCATTTGATGAGTTTAGCTTCGGAGAGTTGCCAGACAAGCTCAACACAAAGAAGCCAATGATGGCATCAAGGCCAACTTCTTATGTTTTCGACCTACACCCACCTTCAGACTTCCAGTTTGGTAACTACGCAACCTTGCTTCAAGAATCTCTTCGCGATGTCCACCAATATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C zf-CCCH

Protein Analysis

1028

Amino Acids

116.74

Weight (kDa)

6.3

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	33 - 185	3.7e-08	DEAD/DEAH box helicase
Helicase_C	PF00271	270 - 386	5e-13	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47680
fragaria_vesca	FvH4_2g25691
malus_domestica	MD03G1287700.v1.1
prunus_persica	Prupe.8G260900_v2.0.a1
pyrus_communis	pycom03g22780
rosa_chinensis	RchiOBHm_Chr6g0293951
rosa_laevigata	RLG00000011913
rosa_multiflora	Rmu_sc0005647.1_g000006
rosa_roxburghii	Rroxscaffold_7G00173800
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6AG352600 Rh6BG359500 Rh6CG366800 Rh6DG353200
rosa_wichuraiana	Rw6G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2848
AasI	GACNNNNNNGTC	1 cut(s)	58
Acc36I	ACCTGC	2 cut(s)	2247, 2848
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	4 cut(s)	43, 132, 1512, 3063
AccIII	TCCGGA	1 cut(s)	688
AciI	CCGC	6 cut(s)	11, 162, 182, 242, 388, 1879
AclWI	GGATC	6 cut(s)	579, 680, 1292, 1322, 1785, 1925
AcoI	YGGCCR	5 cut(s)	619, 666, 987, 1165, 1443
AcsI	RAATTY	6 cut(s)	68, 1363, 1729, 2297, 2521, 2734
AcuI	CTGAAG	7 cut(s)	503, 777, 899, 1730, 2052, 2454, 2997
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	6 cut(s)	223, 554, 762, 1482, 1937, 2055
AfiI	CCNNNNNNNGG	5 cut(s)	617, 1199, 1789, 2010, 2491
AflII	CTTAAG	1 cut(s)	1484
AflIII	ACRYGT	3 cut(s)	330, 1157, 1699
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	9 cut(s)	358, 548, 818, 1352, 1363, 1708, 1735, 2720, 3050
AjnI	CCWGG	4 cut(s)	855, 1023, 2313, 2805
Alw21I	GWGCWC	3 cut(s)	1805, 1824, 1878
Alw26I	GTCTC	5 cut(s)	12, 146, 1125, 1488, 1846
Alw44I	GTGCAC	2 cut(s)	1820, 1874
AlwI	GGATC	6 cut(s)	579, 680, 1292, 1322, 1785, 1925
Aor13HI	TCCGGA	1 cut(s)	688
ApaLI	GTGCAC	2 cut(s)	1820, 1874
ApeKI	GCWGC	6 cut(s)	33, 862, 921, 1272, 1507, 2134
ApoI	RAATTY	6 cut(s)	68, 1363, 1729, 2297, 2521, 2734
ArsI	GACNNNNNNTTYG	4 cut(s)	317, 349, 3008, 3040
AseI	ATTAAT	2 cut(s)	1293, 2226
AsiGI	ACCGGT	1 cut(s)	155
Asp700I	GAANNNNTTC	3 cut(s)	1518, 1860, 3057
AspA2I	CCTAGG	1 cut(s)	230
AspLEI	GCGC	5 cut(s)	43, 45, 94, 409, 1512
AspS9I	GGNCC	2 cut(s)	1223, 1887
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	6 cut(s)	97, 327, 2042, 2624, 2810, 2818
AsuII	TTCGAA	1 cut(s)	2788
AvaII	GGWCC	1 cut(s)	1223
AvrII	CCTAGG	1 cut(s)	230
BaeGI	GKGCMC	2 cut(s)	1824, 1878
BaeI	ACNNNNGTAYC	4 cut(s)	1223, 1256, 1472, 1505
BalI	TGGCCA	3 cut(s)	989, 1167, 1445
BbsI	GAAGAC	5 cut(s)	1057, 1696, 1800, 1863, 2618
Bbv12I	GWGCWC	3 cut(s)	1805, 1824, 1878
BbvI	GCAGC	6 cut(s)	45, 874, 933, 1259, 1494, 2146
BceAI	ACGGC	2 cut(s)	105, 1216
BciT130I	CCWGG	4 cut(s)	857, 1025, 2315, 2807
BciVI	GTATCC	2 cut(s)	1534, 2471
BclI	TGATCA	2 cut(s)	1129, 2176
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	5 cut(s)	12, 146, 1125, 1488, 1846
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	1473
BfoI	RGCGCY	1 cut(s)	95
BfrI	CTTAAG	1 cut(s)	1484
BfuAI	ACCTGC	2 cut(s)	2247, 2848
BfuI	GTATCC	2 cut(s)	1534, 2471
BglII	AGATCT	2 cut(s)	449, 957
BisI	GCNGC	6 cut(s)	34, 863, 922, 1273, 1508, 2135
BlnI	CCTAGG	1 cut(s)	230
BlsI	GCNGC	6 cut(s)	35, 864, 923, 1274, 1509, 2136
Bme1390I	CCNGG	5 cut(s)	98, 857, 1025, 2315, 2807
Bme18I	GGWCC	1 cut(s)	1223
BmgT120I	GGNCC	2 cut(s)	1223, 1887
BmiI	GGNNCC	5 cut(s)	807, 872, 1225, 2205, 2669
BmrFI	CCNGG	5 cut(s)	98, 857, 1025, 2315, 2807
BmsI	GCATC	6 cut(s)	1242, 1456, 2023, 2137, 2791, 2981
BoxI	GACNNNNGTC	1 cut(s)	2606
BpiI	GAAGAC	5 cut(s)	1057, 1696, 1800, 1863, 2618
BplI	GAGNNNNNCTC	2 cut(s)	2808, 2840
BpmI	CTGGAG	3 cut(s)	387, 878, 2297
Bpu14I	TTCGAA	1 cut(s)	2788
BpuEI	CTTGAG	3 cut(s)	532, 1229, 2039
BpuMI	CCSGG	1 cut(s)	98
Bsa29I	ATCGAT	1 cut(s)	684
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	8 cut(s)	230, 855, 1023, 1302, 1403, 2314, 2678, 2805
BsaWI	WCCGGW	4 cut(s)	82, 155, 688, 1643
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 1135, 1165
Bsc4I	CCNNNNNNNGG	5 cut(s)	617, 1199, 1789, 2010, 2491
Bse118I	RCCGGY	2 cut(s)	155, 2003
Bse1I	ACTGG	7 cut(s)	198, 786, 990, 1446, 1802, 2496, 3022
Bse3DI	GCAATG	1 cut(s)	872
BseAI	TCCGGA	1 cut(s)	688
BseBI	CCWGG	4 cut(s)	857, 1025, 2315, 2807
BseCI	ATCGAT	1 cut(s)	684
BseDI	CCNNGG	8 cut(s)	230, 855, 1023, 1302, 1403, 2314, 2678, 2805
BseGI	GGATG	4 cut(s)	1257, 2375, 2500, 2543
BseLI	CCNNNNNNNGG	5 cut(s)	617, 1199, 1789, 2010, 2491
BseMI	GCAATG	1 cut(s)	872
BseMII	CTCAG	3 cut(s)	901, 1136, 1226
BseNI	ACTGG	7 cut(s)	198, 786, 990, 1446, 1802, 2496, 3022
BsePI	GCGCGC	1 cut(s)	41
BseSI	GKGCMC	2 cut(s)	1824, 1878
BseXI	GCAGC	6 cut(s)	45, 874, 933, 1259, 1494, 2146
BsgI	GTGCAG	1 cut(s)	52
Bsh1236I	CGCG	4 cut(s)	43, 132, 1512, 3063
BshTI	ACCGGT	1 cut(s)	155
BshVI	ATCGAT	1 cut(s)	684
BsiHKAI	GWGCWC	3 cut(s)	1805, 1824, 1878
BsiSI	CCGG	8 cut(s)	83, 97, 156, 618, 689, 1644, 1885, 2004
BsiWI	CGTACG	1 cut(s)	1935
BslFI	GGGAC	5 cut(s)	404, 412, 596, 1209, 2428
BslI	CCNNNNNNNGG	5 cut(s)	617, 1199, 1789, 2010, 2491
BsmAI	GTCTC	5 cut(s)	12, 146, 1125, 1488, 1846
BsmBI	CGTCTC	2 cut(s)	12, 1488
BsmFI	GGGAC	5 cut(s)	404, 412, 596, 1209, 2428
BsmI	GAATGC	7 cut(s)	1078, 1509, 1518, 1661, 1956, 2136, 2258
Bso31I	GGTCTC	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	2788
Bsp1286I	GDGCHC	3 cut(s)	1805, 1824, 1878
Bsp13I	TCCGGA	1 cut(s)	688
Bsp1407I	TGTACA	1 cut(s)	221
Bsp68I	TCGCGA	1 cut(s)	3063
BspACI	CCGC	6 cut(s)	11, 162, 182, 242, 388, 1879
BspCNI	CTCAG	3 cut(s)	900, 1135, 1227
BspDI	ATCGAT	1 cut(s)	684
BspEI	TCCGGA	1 cut(s)	688
BspFNI	CGCG	4 cut(s)	43, 132, 1512, 3063
BspHI	TCATGA	3 cut(s)	945, 2179, 2536
BspLI	GGNNCC	5 cut(s)	807, 872, 1225, 2205, 2669
BspMI	ACCTGC	2 cut(s)	2247, 2848
BspPI	GGATC	6 cut(s)	579, 680, 1292, 1322, 1785, 1925
BspT104I	TTCGAA	1 cut(s)	2788
BspTI	CTTAAG	1 cut(s)	1484
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	872
BsrFI	RCCGGY	2 cut(s)	155, 2003
BsrGI	TGTACA	1 cut(s)	221
BsrI	ACTGG	7 cut(s)	198, 786, 990, 1446, 1802, 2496, 3022
BssAI	RCCGGY	2 cut(s)	155, 2003
BssECI	CCNNGG	8 cut(s)	230, 855, 1023, 1302, 1403, 2314, 2678, 2805
BssHII	GCGCGC	1 cut(s)	41
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	230, 1302, 2678
Bst2UI	CCWGG	4 cut(s)	857, 1025, 2315, 2807
Bst4CI	ACNGT	3 cut(s)	284, 2457, 2853
Bst6I	CTCTTC	2 cut(s)	654, 3063
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	1484
BstAPI	GCANNNNNTGC	2 cut(s)	2253, 2880
BstAUI	TGTACA	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	2788
BstC8I	GCNNGC	8 cut(s)	43, 173, 405, 1205, 1383, 1443, 2530, 2699
BstDEI	CTNAG	5 cut(s)	887, 1116, 1122, 1235, 1324
BstF5I	GGATG	4 cut(s)	1257, 2375, 2500, 2543
BstFNI	CGCG	4 cut(s)	43, 132, 1512, 3063
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	5 cut(s)	43, 45, 94, 409, 1512
BstMAI	GTCTC	5 cut(s)	12, 146, 1125, 1488, 1846
BstMWI	GCNNNNNNNGC	9 cut(s)	42, 168, 181, 248, 2020, 2244, 2253, 2880, 2944
BstNI	CCWGG	4 cut(s)	857, 1025, 2315, 2807
BstNSI	RCATGY	6 cut(s)	334, 407, 1161, 1385, 1956, 2701
BstPAI	GACNNNNGTC	1 cut(s)	2606
BstSCI	CCNGG	5 cut(s)	96, 855, 1023, 2313, 2805
BstSFI	CTRYAG	1 cut(s)	1473
BstSLI	GKGCMC	2 cut(s)	1824, 1878
BstUI	CGCG	4 cut(s)	43, 132, 1512, 3063
BstV1I	GCAGC	6 cut(s)	45, 874, 933, 1259, 1494, 2146
BstV2I	GAAGAC	5 cut(s)	1057, 1696, 1800, 1863, 2618
BstX2I	RGATCY	5 cut(s)	449, 571, 957, 1327, 1777
BstYI	RGATCY	5 cut(s)	449, 571, 957, 1327, 1777
Bsu15I	ATCGAT	1 cut(s)	684
BsuI	GTATCC	2 cut(s)	1534, 2471
BsuTUI	ATCGAT	1 cut(s)	684
BtgZI	GCGATG	2 cut(s)	956, 3078
BtsCI	GGATG	4 cut(s)	1257, 2375, 2500, 2543
BtsI	GCAGTG	1 cut(s)	2254
BtsIMutI	CAGTG	7 cut(s)	289, 351, 1829, 1878, 2254, 2597, 2734
BtuMI	TCGCGA	1 cut(s)	3063
BveI	ACCTGC	2 cut(s)	2247, 2848
Cac8I	GCNNGC	8 cut(s)	43, 173, 405, 1205, 1383, 1443, 2530, 2699
CciI	TCATGA	3 cut(s)	945, 2179, 2536
CfoI	GCGC	5 cut(s)	43, 45, 94, 409, 1512
Cfr10I	RCCGGY	2 cut(s)	155, 2003
Cfr13I	GGNCC	2 cut(s)	1223, 1887
ClaI	ATCGAT	1 cut(s)	684
CseI	GACGC	3 cut(s)	48, 121, 409
Csp6I	GTAC	6 cut(s)	222, 553, 761, 1481, 1936, 2054
CspAI	ACCGGT	1 cut(s)	155
CspCI	CAANNNNNGTGG	2 cut(s)	979, 1014
CviQI	GTAC	6 cut(s)	222, 553, 761, 1481, 1936, 2054
DdeI	CTNAG	5 cut(s)	887, 1116, 1122, 1235, 1324
DraI	TTTAAA	2 cut(s)	901, 2169
DrdI	GACNNNNNNGTC	1 cut(s)	58
DseDI	GACNNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	5 cut(s)	619, 666, 987, 1165, 1443
Eam1104I	CTCTTC	2 cut(s)	654, 3063
EarI	CTCTTC	2 cut(s)	654, 3063
Eco130I	CCWWGG	3 cut(s)	230, 1302, 2678
Eco147I	AGGCCT	2 cut(s)	1307, 1322
Eco31I	GGTCTC	1 cut(s)	146
Eco32I	GATATC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	1223
Eco57I	CTGAAG	7 cut(s)	503, 777, 899, 1730, 2052, 2454, 2997
EcoO109I	RGGNCCY	1 cut(s)	1223
EcoRII	CCWGG	4 cut(s)	855, 1023, 2313, 2805
EcoRV	GATATC	1 cut(s)	308
EcoT14I	CCWWGG	3 cut(s)	230, 1302, 2678
EcoT22I	ATGCAT	4 cut(s)	1383, 1387, 1958, 2152
ErhI	CCWWGG	3 cut(s)	230, 1302, 2678
Esp3I	CGTCTC	2 cut(s)	12, 1488
FaqI	GGGAC	5 cut(s)	404, 412, 596, 1209, 2428
FauI	CCCGC	1 cut(s)	381
FauNDI	CATATG	1 cut(s)	1377
FbaI	TGATCA	2 cut(s)	1129, 2176
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	6 cut(s)	34, 863, 922, 1273, 1508, 2135
FokI	GGATG	4 cut(s)	1264, 2362, 2507, 2530
Fsp4HI	GCNGC	6 cut(s)	34, 863, 922, 1273, 1508, 2135
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	5 cut(s)	42, 44, 93, 408, 1511
GluI	GCNGC	6 cut(s)	34, 863, 922, 1273, 1508, 2135
GsuI	CTGGAG	3 cut(s)	387, 878, 2297
HaeII	RGCGCY	1 cut(s)	95
HapII	CCGG	8 cut(s)	83, 97, 156, 618, 689, 1644, 1885, 2004
HgaI	GACGC	3 cut(s)	48, 121, 409
HhaI	GCGC	5 cut(s)	43, 45, 94, 409, 1512
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	5 cut(s)	41, 43, 92, 407, 1510
HinP1I	GCGC	5 cut(s)	41, 43, 92, 407, 1510
HincII	GTYRAC	3 cut(s)	51, 1970, 2106
HindII	GTYRAC	3 cut(s)	51, 1970, 2106
HindIII	AAGCTT	2 cut(s)	1205, 2530
HpaII	CCGG	8 cut(s)	83, 97, 156, 618, 689, 1644, 1885, 2004
HphI	GGTGA	6 cut(s)	97, 327, 2042, 2624, 2810, 2818
Hpy166II	GTNNAC	9 cut(s)	51, 224, 907, 1822, 1876, 1902, 1970, 2106, 3070
Hpy8I	GTNNAC	9 cut(s)	51, 224, 907, 1822, 1876, 1902, 1970, 2106, 3070
Hpy99I	CGWCG	5 cut(s)	28, 31, 52, 113, 149
HpyCH4III	ACNGT	3 cut(s)	284, 2457, 2853
HpyCH4IV	ACGT	3 cut(s)	23, 1497, 1699
HpyF10VI	GCNNNNNNNGC	9 cut(s)	42, 168, 181, 248, 2020, 2244, 2253, 2880, 2944
HpyF3I	CTNAG	5 cut(s)	887, 1116, 1122, 1235, 1324
HpySE526I	ACGT	3 cut(s)	23, 1497, 1699
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	5 cut(s)	41, 43, 92, 407, 1510
Kpn2I	TCCGGA	1 cut(s)	688
Ksp22I	TGATCA	2 cut(s)	1129, 2176
LmnI	GCTCC	5 cut(s)	99, 805, 859, 1722, 2209
Lsp1109I	GCAGC	6 cut(s)	45, 874, 933, 1259, 1494, 2146
LweI	GCATC	6 cut(s)	1242, 1456, 2023, 2137, 2791, 2981
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	3 cut(s)	23, 1497, 1699
MaeIII	GTNAC	9 cut(s)	85, 133, 278, 333, 1012, 1183, 1756, 2364, 3029
MflI	RGATCY	5 cut(s)	449, 571, 957, 1327, 1777
MhlI	GDGCHC	3 cut(s)	1805, 1824, 1878
MlsI	TGGCCA	3 cut(s)	989, 1167, 1445
MluCI	AATT	9 cut(s)	68, 213, 1017, 1363, 1688, 1729, 2297, 2521, 2734
MluNI	TGGCCA	3 cut(s)	989, 1167, 1445
MlyI	GAGTC	6 cut(s)	467, 701, 2342, 2368, 2826, 2909
MmeI	TCCRAC	4 cut(s)	99, 283, 866, 1480
Mox20I	TGGCCA	3 cut(s)	989, 1167, 1445
Mph1103I	ATGCAT	4 cut(s)	1383, 1387, 1958, 2152
MroI	TCCGGA	1 cut(s)	688
MroXI	GAANNNNTTC	3 cut(s)	1518, 1860, 3057
MscI	TGGCCA	3 cut(s)	989, 1167, 1445
MslI	CAYNNNNRTG	4 cut(s)	950, 1380, 1535, 3075
Msp20I	TGGCCA	3 cut(s)	989, 1167, 1445
MspCI	CTTAAG	1 cut(s)	1484
MspI	CCGG	8 cut(s)	83, 97, 156, 618, 689, 1644, 1885, 2004
MspR9I	CCNGG	5 cut(s)	98, 857, 1025, 2315, 2807
Mva1269I	GAATGC	7 cut(s)	1078, 1509, 1518, 1661, 1956, 2136, 2258
MvaI	CCWGG	4 cut(s)	857, 1025, 2315, 2807
MvnI	CGCG	4 cut(s)	43, 132, 1512, 3063
MwoI	GCNNNNNNNGC	9 cut(s)	42, 168, 181, 248, 2020, 2244, 2253, 2880, 2944
NciI	CCSGG	1 cut(s)	98
NdeI	CATATG	1 cut(s)	1377
NlaIV	GGNNCC	5 cut(s)	807, 872, 1225, 2205, 2669
NmuCI	GTSAC	4 cut(s)	85, 133, 333, 1756
NruI	TCGCGA	1 cut(s)	3063
NsiI	ATGCAT	4 cut(s)	1383, 1387, 1958, 2152
NspI	RCATGY	6 cut(s)	334, 407, 1161, 1385, 1956, 2701
NspV	TTCGAA	1 cut(s)	2788
PaeI	GCATGC	3 cut(s)	407, 1385, 2701
PagI	TCATGA	3 cut(s)	945, 2179, 2536
PaqCI	CACCTGC	1 cut(s)	2848
PauI	GCGCGC	1 cut(s)	41
PceI	AGGCCT	2 cut(s)	1307, 1322
PciI	ACATGT	2 cut(s)	330, 1157
PcsI	WCGNNNNNNNCGW	2 cut(s)	56, 129
PctI	GAATGC	7 cut(s)	1078, 1509, 1518, 1661, 1956, 2136, 2258
PdmI	GAANNNNTTC	3 cut(s)	1518, 1860, 3057
PfeI	GAWTC	6 cut(s)	1004, 1043, 1280, 1834, 2674, 3053
Pfl23II	CGTACG	1 cut(s)	1935
PfoI	TCCNGGA	1 cut(s)	96
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	6 cut(s)	35, 864, 923, 1274, 1509, 2136
PleI	GAGTC	6 cut(s)	466, 700, 2341, 2367, 2825, 2908
PpsI	GAGTC	6 cut(s)	466, 700, 2341, 2367, 2825, 2908
PpuMI	RGGWCCY	1 cut(s)	1223
PscI	ACATGT	2 cut(s)	330, 1157
PshAI	GACNNNNGTC	1 cut(s)	2606
PshBI	ATTAAT	2 cut(s)	1293, 2226
Psp5II	RGGWCCY	1 cut(s)	1223
Psp6I	CCWGG	4 cut(s)	855, 1023, 2313, 2805
PspGI	CCWGG	4 cut(s)	855, 1023, 2313, 2805
PspLI	CGTACG	1 cut(s)	1935
PspN4I	GGNNCC	5 cut(s)	807, 872, 1225, 2205, 2669
PspPI	GGNCC	2 cut(s)	1223, 1887
PspPPI	RGGWCCY	1 cut(s)	1223
PsuI	RGATCY	5 cut(s)	449, 571, 957, 1327, 1777
PteI	GCGCGC	1 cut(s)	41
RruI	TCGCGA	1 cut(s)	3063
RsaI	GTAC	6 cut(s)	223, 554, 762, 1482, 1937, 2055
RsaNI	GTAC	6 cut(s)	222, 553, 761, 1481, 1936, 2054
RseI	CAYNNNNRTG	4 cut(s)	950, 1380, 1535, 3075
SalI	GTCGAC	1 cut(s)	49
SatI	GCNGC	6 cut(s)	34, 863, 922, 1273, 1508, 2135
Sau96I	GGNCC	2 cut(s)	1223, 1887
SchI	GAGTC	6 cut(s)	467, 701, 2342, 2368, 2826, 2909
ScrFI	CCNGG	5 cut(s)	98, 857, 1025, 2315, 2807
SduI	GDGCHC	3 cut(s)	1805, 1824, 1878
SfaNI	GCATC	6 cut(s)	1242, 1456, 2023, 2137, 2791, 2981
SfcI	CTRYAG	1 cut(s)	1473
SfuI	TTCGAA	1 cut(s)	2788
SinI	GGWCC	1 cut(s)	1223
SmiI	ATTTAAAT	1 cut(s)	2169
SmiMI	CAYNNNNRTG	4 cut(s)	950, 1380, 1535, 3075
SmlI	CTYRAG	4 cut(s)	511, 1208, 1484, 2018
SmoI	CTYRAG	4 cut(s)	511, 1208, 1484, 2018
SphI	GCATGC	3 cut(s)	407, 1385, 2701
Sse9I	AATT	9 cut(s)	68, 213, 1017, 1363, 1688, 1729, 2297, 2521, 2734
SseBI	AGGCCT	2 cut(s)	1307, 1322
SsiI	CCGC	6 cut(s)	11, 162, 182, 242, 388, 1879
SspI	AATATT	1 cut(s)	997
SspMI	CTAG	1 cut(s)	231
StuI	AGGCCT	2 cut(s)	1307, 1322
StyD4I	CCNGG	5 cut(s)	96, 855, 1023, 2313, 2805
StyI	CCWWGG	3 cut(s)	230, 1302, 2678
SwaI	ATTTAAAT	1 cut(s)	2169
TaaI	ACNGT	3 cut(s)	284, 2457, 2853
TaiI	ACGT	3 cut(s)	26, 1500, 1702
TasI	AATT	9 cut(s)	68, 213, 1017, 1363, 1688, 1729, 2297, 2521, 2734
TatI	WGTACW	2 cut(s)	221, 760
TfiI	GAWTC	6 cut(s)	1004, 1043, 1280, 1834, 2674, 3053
TscAI	CASTG	7 cut(s)	289, 351, 1836, 1878, 2254, 2604, 2734
TseFI	GTSAC	4 cut(s)	85, 133, 333, 1756
TseI	GCWGC	6 cut(s)	33, 862, 921, 1272, 1507, 2134
Tsp45I	GTSAC	4 cut(s)	85, 133, 333, 1756
TspGWI	ACGGA	5 cut(s)	1709, 1923, 2343, 2352, 2676
TspRI	CASTG	7 cut(s)	289, 351, 1836, 1878, 2254, 2604, 2734
Vha464I	CTTAAG	1 cut(s)	1484
VneI	GTGCAC	2 cut(s)	1820, 1874
VpaK11BI	GGWCC	1 cut(s)	1223
VspI	ATTAAT	2 cut(s)	1293, 2226
XapI	RAATTY	6 cut(s)	68, 1363, 1729, 2297, 2521, 2734
XceI	RCATGY	6 cut(s)	334, 407, 1161, 1385, 1956, 2701
XmaJI	CCTAGG	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	3 cut(s)	1518, 1860, 3057
XspI	CTAG	1 cut(s)	231
Zsp2I	ATGCAT	4 cut(s)	1383, 1387, 1958, 2152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.