zinc finger CCCH domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47680 |
| fragaria_vesca | FvH4_2g25691 |
| malus_domestica | MD03G1287700.v1.1 |
| prunus_persica | Prupe.8G260900_v2.0.a1 |
| pyrus_communis | pycom03g22780 |
| rosa_chinensis | RchiOBHm_Chr6g0293951 |
| rosa_laevigata | RLG00000011913 |
| rosa_multiflora | Rmu_sc0005647.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00173800 |
| rosa_rugosa | Rorug06G0239500 |
| rosa_samantha | Rh6AG352600 Rh6BG359500 Rh6CG366800 Rh6DG353200 |
| rosa_wichuraiana | Rw6G030710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2608 |
| AatII | GACGTC | 1 cut(s) | 26 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 781, 2384 |
| AccI | GTMKAC | 2 cut(s) | 1901, 2138 |
| AccII | CGCG | 3 cut(s) | 132, 1512, 1701 |
| AciI | CCGC | 1 cut(s) | 162 |
| AclWI | GGATC | 4 cut(s) | 579, 1292, 1322, 2492 |
| AcoI | YGGCCR | 4 cut(s) | 316, 619, 1150, 1165 |
| AcuI | CTGAAG | 7 cut(s) | 777, 899, 1247, 1337, 1362, 1986, 2412 |
| AcyI | GRCGYC | 2 cut(s) | 5, 23 |
| AfaI | GTAC | 5 cut(s) | 1482, 1773, 2055, 2771, 2787 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 162, 617, 781, 2384 |
| AflIII | ACRYGT | 3 cut(s) | 1699, 1720, 1837 |
| AgeI | ACCGGT | 3 cut(s) | 155, 1878, 2561 |
| AjnI | CCWGG | 3 cut(s) | 230, 715, 3033 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 53, 85 |
| Alw21I | GWGCWC | 3 cut(s) | 765, 1805, 1878 |
| Alw26I | GTCTC | 7 cut(s) | 81, 146, 1649, 1748, 2257, 2304, 2594 |
| Alw44I | GTGCAC | 2 cut(s) | 761, 1874 |
| AlwI | GGATC | 4 cut(s) | 579, 1292, 1322, 2492 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 493, 2167 |
| AoxI | GGCC | 8 cut(s) | 316, 619, 1029, 1150, 1165, 1408, 1886, 2942 |
| ApaLI | GTGCAC | 2 cut(s) | 761, 1874 |
| AseI | ATTAAT | 2 cut(s) | 1293, 1535 |
| AsiGI | ACCGGT | 3 cut(s) | 155, 1878, 2561 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2729 |
| AspLEI | GCGC | 3 cut(s) | 94, 1437, 1512 |
| AspS9I | GGNCC | 4 cut(s) | 1223, 1408, 1887, 2339 |
| AsuC2I | CCSGG | 1 cut(s) | 98 |
| AsuHPI | GGTGA | 6 cut(s) | 596, 658, 2042, 2346, 2399, 2873 |
| AsuII | TTCGAA | 1 cut(s) | 2978 |
| AvaII | GGWCC | 2 cut(s) | 1223, 2339 |
| BaeGI | GKGCMC | 2 cut(s) | 765, 1878 |
| BalI | TGGCCA | 2 cut(s) | 318, 1167 |
| BbsI | GAAGAC | 2 cut(s) | 336, 1057 |
| Bbv12I | GWGCWC | 3 cut(s) | 765, 1805, 1878 |
| BceAI | ACGGC | 2 cut(s) | 868, 1622 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1865, 1899, 2723, 2757 |
| BciT130I | CCWGG | 3 cut(s) | 232, 717, 3035 |
| BciVI | GTATCC | 3 cut(s) | 1534, 2524, 2527 |
| BclI | TGATCA | 1 cut(s) | 2008 |
| BcnI | CCSGG | 1 cut(s) | 98 |
| BcoDI | GTCTC | 7 cut(s) | 81, 146, 1649, 1748, 2257, 2304, 2594 |
| BfaI | CTAG | 5 cut(s) | 1188, 1325, 1865, 2358, 2465 |
| BfmI | CTRYAG | 4 cut(s) | 1986, 2215, 2585, 2819 |
| BfoI | RGCGCY | 2 cut(s) | 95, 1438 |
| BfuI | GTATCC | 3 cut(s) | 1534, 2524, 2527 |
| BglII | AGATCT | 1 cut(s) | 449 |
| BlpI | GCTNAGC | 1 cut(s) | 1128 |
| Bme1390I | CCNGG | 4 cut(s) | 98, 232, 717, 3035 |
| Bme18I | GGWCC | 2 cut(s) | 1223, 2339 |
| BmgT120I | GGNCC | 4 cut(s) | 1223, 1408, 1887, 2339 |
| BmiI | GGNNCC | 4 cut(s) | 872, 1224, 1409, 2340 |
| BmrFI | CCNGG | 4 cut(s) | 98, 232, 717, 3035 |
| BmsI | GCATC | 8 cut(s) | 390, 1345, 1456, 1981, 2161, 2426, 2752, 2989 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2564 |
| BpiI | GAAGAC | 2 cut(s) | 336, 1057 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2772, 2804 |
| BpmI | CTGGAG | 3 cut(s) | 387, 878, 2052 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1128 |
| Bpu14I | TTCGAA | 1 cut(s) | 2978 |
| BpuEI | CTTGAG | 4 cut(s) | 532, 723, 1469, 2039 |
| BpuMI | CCSGG | 1 cut(s) | 98 |
| BsaHI | GRCGYC | 2 cut(s) | 5, 23 |
| BsaI | GGTCTC | 2 cut(s) | 146, 2257 |
| BsaJI | CCNNGG | 4 cut(s) | 230, 338, 1023, 2639 |
| BsaWI | WCCGGW | 4 cut(s) | 155, 1878, 2561, 3005 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 162, 617, 781, 2384 |
| Bse118I | RCCGGY | 5 cut(s) | 155, 617, 1410, 1878, 2561 |
| Bse1I | ACTGG | 6 cut(s) | 861, 990, 1153, 1446, 2236, 2523 |
| Bse3DI | GCAATG | 1 cut(s) | 872 |
| BseBI | CCWGG | 3 cut(s) | 232, 717, 3035 |
| BseDI | CCNNGG | 4 cut(s) | 230, 338, 1023, 2639 |
| BseGI | GGATG | 8 cut(s) | 385, 405, 1919, 2176, 2441, 2458, 2745, 3030 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 162, 617, 781, 2384 |
| BseMI | GCAATG | 1 cut(s) | 872 |
| BseMII | CTCAG | 7 cut(s) | 197, 702, 1119, 1136, 1226, 1614, 2828 |
| BseNI | ACTGG | 6 cut(s) | 861, 990, 1153, 1446, 2236, 2523 |
| BseRI | GAGGAG | 2 cut(s) | 31, 2637 |
| BseSI | GKGCMC | 2 cut(s) | 765, 1878 |
| BsgI | GTGCAG | 1 cut(s) | 1841 |
| Bsh1236I | CGCG | 3 cut(s) | 132, 1512, 1701 |
| Bsh1285I | CGRYCG | 1 cut(s) | 33 |
| BshFI | GGCC | 8 cut(s) | 318, 621, 1031, 1152, 1167, 1410, 1888, 2944 |
| BshTI | ACCGGT | 3 cut(s) | 155, 1878, 2561 |
| BsiEI | CGRYCG | 1 cut(s) | 33 |
| BsiHKAI | GWGCWC | 3 cut(s) | 765, 1805, 1878 |
| BsiSI | CCGG | 7 cut(s) | 97, 156, 618, 1411, 1879, 2562, 3006 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 162, 617, 781, 2384 |
| BsmAI | GTCTC | 7 cut(s) | 81, 146, 1649, 1748, 2257, 2304, 2594 |
| BsmBI | CGTCTC | 1 cut(s) | 81 |
| BsmI | GAATGC | 2 cut(s) | 1509, 2439 |
| BsnI | GGCC | 8 cut(s) | 318, 621, 1031, 1152, 1167, 1410, 1888, 2944 |
| Bso31I | GGTCTC | 2 cut(s) | 146, 2257 |
| Bsp119I | TTCGAA | 1 cut(s) | 2978 |
| Bsp1286I | GDGCHC | 3 cut(s) | 765, 1805, 1878 |
| Bsp1407I | TGTACA | 1 cut(s) | 2769 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1128 |
| BspACI | CCGC | 1 cut(s) | 162 |
| BspANI | GGCC | 8 cut(s) | 318, 621, 1031, 1152, 1167, 1410, 1888, 2944 |
| BspCNI | CTCAG | 7 cut(s) | 196, 701, 1120, 1135, 1227, 1615, 2827 |
| BspFNI | CGCG | 3 cut(s) | 132, 1512, 1701 |
| BspHI | TCATGA | 2 cut(s) | 945, 2329 |
| BspLI | GGNNCC | 4 cut(s) | 872, 1224, 1409, 2340 |
| BspMAI | CTGCAG | 2 cut(s) | 2219, 2589 |
| BspPI | GGATC | 4 cut(s) | 579, 1292, 1322, 2492 |
| BspQI | GCTCTTC | 1 cut(s) | 815 |
| BspT104I | TTCGAA | 1 cut(s) | 2978 |
| BspTNI | GGTCTC | 2 cut(s) | 146, 2257 |
| BsrDI | GCAATG | 1 cut(s) | 872 |
| BsrFI | RCCGGY | 5 cut(s) | 155, 617, 1410, 1878, 2561 |
| BsrGI | TGTACA | 1 cut(s) | 2769 |
| BsrI | ACTGG | 6 cut(s) | 861, 990, 1153, 1446, 2236, 2523 |
| BssAI | RCCGGY | 5 cut(s) | 155, 617, 1410, 1878, 2561 |
| BssECI | CCNNGG | 4 cut(s) | 230, 338, 1023, 2639 |
| BssNAI | GTATAC | 1 cut(s) | 2139 |
| BssNI | GRCGYC | 2 cut(s) | 5, 23 |
| BssT1I | CCWWGG | 3 cut(s) | 338, 1023, 2639 |
| Bst1107I | GTATAC | 1 cut(s) | 2139 |
| Bst2UI | CCWGG | 3 cut(s) | 232, 717, 3035 |
| Bst4CI | ACNGT | 4 cut(s) | 1076, 1771, 2415, 2690 |
| Bst6I | CTCTTC | 3 cut(s) | 654, 815, 2290 |
| BstACI | GRCGYC | 2 cut(s) | 5, 23 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 248, 2232 |
| BstAUI | TGTACA | 1 cut(s) | 2769 |
| BstBI | TTCGAA | 1 cut(s) | 2978 |
| BstC8I | GCNNGC | 7 cut(s) | 173, 287, 405, 603, 1439, 1443, 2660 |
| BstDEI | CTNAG | 7 cut(s) | 183, 688, 1122, 1128, 1235, 1623, 2814 |
| BstEII | GGTNACC | 1 cut(s) | 664 |
| BstF5I | GGATG | 8 cut(s) | 385, 405, 1919, 2176, 2441, 2458, 2745, 3030 |
| BstFNI | CGCG | 3 cut(s) | 132, 1512, 1701 |
| BstH2I | RGCGCY | 2 cut(s) | 95, 1438 |
| BstHHI | GCGC | 3 cut(s) | 94, 1437, 1512 |
| BstMAI | GTCTC | 7 cut(s) | 81, 146, 1649, 1748, 2257, 2304, 2594 |
| BstMCI | CGRYCG | 1 cut(s) | 33 |
| BstNI | CCWGG | 3 cut(s) | 232, 717, 3035 |
| BstNSI | RCATGY | 3 cut(s) | 407, 1841, 1956 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2564 |
| BstPI | GGTNACC | 1 cut(s) | 664 |
| BstSCI | CCNGG | 4 cut(s) | 96, 230, 715, 3033 |
| BstSFI | CTRYAG | 4 cut(s) | 1986, 2215, 2585, 2819 |
| BstSLI | GKGCMC | 2 cut(s) | 765, 1878 |
| BstUI | CGCG | 3 cut(s) | 132, 1512, 1701 |
| BstV2I | GAAGAC | 2 cut(s) | 336, 1057 |
| BstX2I | RGATCY | 3 cut(s) | 449, 571, 1327 |
| BstYI | RGATCY | 3 cut(s) | 449, 571, 1327 |
| BstZ17I | GTATAC | 1 cut(s) | 2139 |
| BsuI | GTATCC | 3 cut(s) | 1534, 2524, 2527 |
| BsuRI | GGCC | 8 cut(s) | 318, 621, 1031, 1152, 1167, 1410, 1888, 2944 |
| BtsCI | GGATG | 8 cut(s) | 385, 405, 1919, 2176, 2441, 2458, 2745, 3030 |
| BtsIMutI | CAGTG | 5 cut(s) | 854, 930, 1878, 2555, 2695 |
| Cac8I | GCNNGC | 7 cut(s) | 173, 287, 405, 603, 1439, 1443, 2660 |
| CaiI | CAGNNNCTG | 2 cut(s) | 493, 2167 |
| CciI | TCATGA | 2 cut(s) | 945, 2329 |
| CfoI | GCGC | 3 cut(s) | 94, 1437, 1512 |
| Cfr10I | RCCGGY | 5 cut(s) | 155, 617, 1410, 1878, 2561 |
| Cfr13I | GGNCC | 4 cut(s) | 1223, 1408, 1887, 2339 |
| CseI | GACGC | 1 cut(s) | 121 |
| Csp6I | GTAC | 5 cut(s) | 1481, 1772, 2054, 2770, 2786 |
| CspAI | ACCGGT | 3 cut(s) | 155, 1878, 2561 |
| CviQI | GTAC | 5 cut(s) | 1481, 1772, 2054, 2770, 2786 |
| DdeI | CTNAG | 7 cut(s) | 183, 688, 1122, 1128, 1235, 1623, 2814 |
| DraI | TTTAAA | 2 cut(s) | 358, 901 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2608 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2608 |
| EaeI | YGGCCR | 4 cut(s) | 316, 619, 1150, 1165 |
| Eam1104I | CTCTTC | 3 cut(s) | 654, 815, 2290 |
| EarI | CTCTTC | 3 cut(s) | 654, 815, 2290 |
| Eco130I | CCWWGG | 3 cut(s) | 338, 1023, 2639 |
| Eco31I | GGTCTC | 2 cut(s) | 146, 2257 |
| Eco32I | GATATC | 1 cut(s) | 308 |
| Eco47I | GGWCC | 2 cut(s) | 1223, 2339 |
| Eco57I | CTGAAG | 7 cut(s) | 777, 899, 1247, 1337, 1362, 1986, 2412 |
| Eco91I | GGTNACC | 1 cut(s) | 664 |
| EcoO65I | GGTNACC | 1 cut(s) | 664 |
| EcoRII | CCWGG | 3 cut(s) | 230, 715, 3033 |
| EcoRV | GATATC | 1 cut(s) | 308 |
| EcoT14I | CCWWGG | 3 cut(s) | 338, 1023, 2639 |
| EcoT22I | ATGCAT | 4 cut(s) | 405, 1360, 2375, 2441 |
| ErhI | CCWWGG | 3 cut(s) | 338, 1023, 2639 |
| Esp3I | CGTCTC | 1 cut(s) | 81 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 634, 666, 2702, 2734 |
| FauI | CCCGC | 1 cut(s) | 155 |
| FauNDI | CATATG | 2 cut(s) | 2596, 2953 |
| FbaI | TGATCA | 1 cut(s) | 2008 |
| FblI | GTMKAC | 2 cut(s) | 1901, 2138 |
| FokI | GGATG | 8 cut(s) | 392, 412, 1906, 2183, 2448, 2465, 2732, 3017 |
| FspBI | CTAG | 5 cut(s) | 1188, 1325, 1865, 2358, 2465 |
| GlaI | GCGC | 3 cut(s) | 93, 1436, 1511 |
| GsuI | CTGGAG | 3 cut(s) | 387, 878, 2052 |
| HaeII | RGCGCY | 2 cut(s) | 95, 1438 |
| HaeIII | GGCC | 8 cut(s) | 318, 621, 1031, 1152, 1167, 1410, 1888, 2944 |
| HapII | CCGG | 7 cut(s) | 97, 156, 618, 1411, 1879, 2562, 3006 |
| HgaI | GACGC | 1 cut(s) | 121 |
| HhaI | GCGC | 3 cut(s) | 94, 1437, 1512 |
| Hin1I | GRCGYC | 2 cut(s) | 5, 23 |
| Hin6I | GCGC | 3 cut(s) | 92, 1435, 1510 |
| HinP1I | GCGC | 3 cut(s) | 92, 1435, 1510 |
| HindIII | AAGCTT | 2 cut(s) | 1100, 2845 |
| HpaII | CCGG | 7 cut(s) | 97, 156, 618, 1411, 1879, 2562, 3006 |
| HphI | GGTGA | 6 cut(s) | 596, 658, 2042, 2346, 2399, 2873 |
| Hpy166II | GTNNAC | 5 cut(s) | 763, 1876, 1902, 2139, 2342 |
| Hpy8I | GTNNAC | 5 cut(s) | 763, 1876, 1902, 2139, 2342 |
| Hpy99I | CGWCG | 7 cut(s) | 25, 28, 31, 49, 52, 55, 113 |
| HpyCH4III | ACNGT | 4 cut(s) | 1076, 1771, 2415, 2690 |
| HpyCH4IV | ACGT | 2 cut(s) | 23, 1720 |
| HpyF3I | CTNAG | 7 cut(s) | 183, 688, 1122, 1128, 1235, 1623, 2814 |
| HpySE526I | ACGT | 2 cut(s) | 23, 1720 |
| Hsp92I | GRCGYC | 2 cut(s) | 5, 23 |
| HspAI | GCGC | 3 cut(s) | 92, 1435, 1510 |
| Ksp22I | TGATCA | 1 cut(s) | 2008 |
| LguI | GCTCTTC | 1 cut(s) | 815 |
| LmnI | GCTCC | 7 cut(s) | 44, 99, 859, 1619, 1726, 2211, 2255 |
| LweI | GCATC | 8 cut(s) | 390, 1345, 1456, 1981, 2161, 2426, 2752, 2989 |
| MaeI | CTAG | 5 cut(s) | 1188, 1325, 1865, 2358, 2465 |
| MaeII | ACGT | 2 cut(s) | 23, 1720 |
| MaeIII | GTNAC | 6 cut(s) | 6, 133, 664, 1012, 1183, 1827 |
| MfeI | CAATTG | 2 cut(s) | 2314, 2604 |
| MflI | RGATCY | 3 cut(s) | 449, 571, 1327 |
| MhlI | GDGCHC | 3 cut(s) | 765, 1805, 1878 |
| MlsI | TGGCCA | 2 cut(s) | 318, 1167 |
| MluI | ACGCGT | 1 cut(s) | 1699 |
| MluNI | TGGCCA | 2 cut(s) | 318, 1167 |
| MlyI | GAGTC | 2 cut(s) | 680, 2873 |
| MmeI | TCCRAC | 4 cut(s) | 283, 1628, 2447, 2511 |
| Mox20I | TGGCCA | 2 cut(s) | 318, 1167 |
| Mph1103I | ATGCAT | 4 cut(s) | 405, 1360, 2375, 2441 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2729 |
| MscI | TGGCCA | 2 cut(s) | 318, 1167 |
| MseI | TTAA | 8 cut(s) | 357, 483, 567, 750, 900, 1293, 1535, 2652 |
| MslI | CAYNNNNRTG | 4 cut(s) | 801, 950, 2595, 2750 |
| Msp20I | TGGCCA | 2 cut(s) | 318, 1167 |
| MspA1I | CMGCKG | 1 cut(s) | 2006 |
| MspI | CCGG | 7 cut(s) | 97, 156, 618, 1411, 1879, 2562, 3006 |
| MspR9I | CCNGG | 4 cut(s) | 98, 232, 717, 3035 |
| MunI | CAATTG | 2 cut(s) | 2314, 2604 |
| Mva1269I | GAATGC | 2 cut(s) | 1509, 2439 |
| MvaI | CCWGG | 3 cut(s) | 232, 717, 3035 |
| MvnI | CGCG | 3 cut(s) | 132, 1512, 1701 |
| NciI | CCSGG | 1 cut(s) | 98 |
| NdeI | CATATG | 2 cut(s) | 2596, 2953 |
| NlaIV | GGNNCC | 4 cut(s) | 872, 1224, 1409, 2340 |
| NmuCI | GTSAC | 4 cut(s) | 6, 133, 664, 1827 |
| NsiI | ATGCAT | 4 cut(s) | 405, 1360, 2375, 2441 |
| NspI | RCATGY | 3 cut(s) | 407, 1841, 1956 |
| NspV | TTCGAA | 1 cut(s) | 2978 |
| PaeI | GCATGC | 1 cut(s) | 407 |
| PagI | TCATGA | 2 cut(s) | 945, 2329 |
| PciI | ACATGT | 1 cut(s) | 1837 |
| PciSI | GCTCTTC | 1 cut(s) | 815 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 50, 1726 |
| PctI | GAATGC | 2 cut(s) | 1509, 2439 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2729 |
| PfeI | GAWTC | 9 cut(s) | 458, 697, 1004, 1043, 1280, 1868, 2635, 2695, 2713 |
| PflFI | GACNNNGTC | 1 cut(s) | 25 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 781, 2384 |
| PfoI | TCCNGGA | 2 cut(s) | 96, 3033 |
| PinAI | ACCGGT | 3 cut(s) | 155, 1878, 2561 |
| PleI | GAGTC | 2 cut(s) | 680, 2872 |
| PpsI | GAGTC | 2 cut(s) | 680, 2872 |
| PscI | ACATGT | 1 cut(s) | 1837 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2564 |
| PshBI | ATTAAT | 2 cut(s) | 1293, 1535 |
| Psp6I | CCWGG | 3 cut(s) | 230, 715, 3033 |
| PspEI | GGTNACC | 1 cut(s) | 664 |
| PspGI | CCWGG | 3 cut(s) | 230, 715, 3033 |
| PspN4I | GGNNCC | 4 cut(s) | 872, 1224, 1409, 2340 |
| PspPI | GGNCC | 4 cut(s) | 1223, 1408, 1887, 2339 |
| PstI | CTGCAG | 2 cut(s) | 2219, 2589 |
| PstNI | CAGNNNCTG | 2 cut(s) | 493, 2167 |
| PsuI | RGATCY | 3 cut(s) | 449, 571, 1327 |
| PsyI | GACNNNGTC | 1 cut(s) | 25 |
| PvuII | CAGCTG | 1 cut(s) | 2006 |
| RsaI | GTAC | 5 cut(s) | 1482, 1773, 2055, 2771, 2787 |
| RsaNI | GTAC | 5 cut(s) | 1481, 1772, 2054, 2770, 2786 |
| RseI | CAYNNNNRTG | 4 cut(s) | 801, 950, 2595, 2750 |
| SapI | GCTCTTC | 1 cut(s) | 815 |
| SaqAI | TTAA | 8 cut(s) | 357, 483, 567, 750, 900, 1293, 1535, 2652 |
| Sau96I | GGNCC | 4 cut(s) | 1223, 1408, 1887, 2339 |
| SchI | GAGTC | 2 cut(s) | 680, 2873 |
| ScrFI | CCNGG | 4 cut(s) | 98, 232, 717, 3035 |
| SduI | GDGCHC | 3 cut(s) | 765, 1805, 1878 |
| SfaNI | GCATC | 8 cut(s) | 390, 1345, 1456, 1981, 2161, 2426, 2752, 2989 |
| SfcI | CTRYAG | 4 cut(s) | 1986, 2215, 2585, 2819 |
| SfuI | TTCGAA | 1 cut(s) | 2978 |
| SinI | GGWCC | 2 cut(s) | 1223, 2339 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 801, 950, 2595, 2750 |
| SmlI | CTYRAG | 4 cut(s) | 511, 738, 1484, 2018 |
| SmoI | CTYRAG | 4 cut(s) | 511, 738, 1484, 2018 |
| SphI | GCATGC | 1 cut(s) | 407 |
| SsiI | CCGC | 1 cut(s) | 162 |
| SspI | AATATT | 3 cut(s) | 710, 997, 1533 |
| SspMI | CTAG | 5 cut(s) | 1188, 1325, 1865, 2358, 2465 |
| StyD4I | CCNGG | 4 cut(s) | 96, 230, 715, 3033 |
| StyI | CCWWGG | 3 cut(s) | 338, 1023, 2639 |
| TaaI | ACNGT | 4 cut(s) | 1076, 1771, 2415, 2690 |
| TaiI | ACGT | 2 cut(s) | 26, 1723 |
| TaqII | GACCGA | 1 cut(s) | 19 |
| TatI | WGTACW | 3 cut(s) | 1480, 2769, 2785 |
| TfiI | GAWTC | 9 cut(s) | 458, 697, 1004, 1043, 1280, 1868, 2635, 2695, 2713 |
| Tru1I | TTAA | 8 cut(s) | 357, 483, 567, 750, 900, 1293, 1535, 2652 |
| Tru9I | TTAA | 8 cut(s) | 357, 483, 567, 750, 900, 1293, 1535, 2652 |
| TscAI | CASTG | 5 cut(s) | 861, 937, 1878, 2562, 2695 |
| TseFI | GTSAC | 4 cut(s) | 6, 133, 664, 1827 |
| Tsp45I | GTSAC | 4 cut(s) | 6, 133, 664, 1827 |
| TspGWI | ACGGA | 1 cut(s) | 1215 |
| TspRI | CASTG | 5 cut(s) | 861, 937, 1878, 2562, 2695 |
| Tth111I | GACNNNGTC | 1 cut(s) | 25 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 781, 2384 |
| VneI | GTGCAC | 2 cut(s) | 761, 1874 |
| VpaK11BI | GGWCC | 2 cut(s) | 1223, 2339 |
| VspI | ATTAAT | 2 cut(s) | 1293, 1535 |
| XbaI | TCTAGA | 2 cut(s) | 1324, 2464 |
| XceI | RCATGY | 3 cut(s) | 407, 1841, 1956 |
| XmiI | GTMKAC | 2 cut(s) | 1901, 2138 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2729 |
| XspI | CTAG | 5 cut(s) | 1188, 1325, 1865, 2358, 2465 |
| ZraI | GACGTC | 1 cut(s) | 24 |
| Zsp2I | ATGCAT | 4 cut(s) | 405, 1360, 2375, 2441 |