zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47680 |
| fragaria_vesca | FvH4_2g25691 |
| malus_domestica | MD03G1287700.v1.1 |
| prunus_persica | Prupe.8G260900_v2.0.a1 |
| pyrus_communis | pycom03g22780 |
| rosa_chinensis | RchiOBHm_Chr6g0293951 |
| rosa_laevigata | RLG00000011913 |
| rosa_multiflora | Rmu_sc0005647.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00173800 |
| rosa_rugosa | Rorug06G0239500 |
| rosa_samantha | Rh6AG352600 Rh6BG359500 Rh6CG366800 Rh6DG353200 |
| rosa_wichuraiana | Rw6G030710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2830 |
| Acc16I | TGCGCA | 1 cut(s) | 1681 |
| Acc36I | ACCTGC | 1 cut(s) | 2830 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2408 |
| AccI | GTMKAC | 1 cut(s) | 1904 |
| AccII | CGCG | 2 cut(s) | 99, 132 |
| AciI | CCGC | 3 cut(s) | 97, 182, 1249 |
| AclWI | GGATC | 7 cut(s) | 579, 1292, 1928, 2229, 2242, 2513, 3046 |
| AcoI | YGGCCR | 4 cut(s) | 316, 735, 987, 1165 |
| AcsI | RAATTY | 9 cut(s) | 68, 117, 202, 1581, 1943, 2300, 2500, 2592, 2743 |
| AcuI | CTGAAG | 4 cut(s) | 899, 1247, 1362, 2979 |
| AcyI | GRCGYC | 2 cut(s) | 5, 2901 |
| AfaI | GTAC | 6 cut(s) | 223, 848, 1233, 1482, 2058, 2972 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 2408, 2453, 2640, 2773, 2910 |
| AflII | CTTAAG | 1 cut(s) | 1745 |
| AflIII | ACRYGT | 3 cut(s) | 1699, 1840, 1967 |
| AgeI | ACCGGT | 1 cut(s) | 1881 |
| AjnI | CCWGG | 2 cut(s) | 2316, 3054 |
| Alw21I | GWGCWC | 3 cut(s) | 765, 1808, 1881 |
| Alw26I | GTCTC | 5 cut(s) | 146, 1125, 1488, 2281, 2615 |
| Alw44I | GTGCAC | 2 cut(s) | 761, 1877 |
| AlwI | GGATC | 7 cut(s) | 579, 1292, 1928, 2229, 2242, 2513, 3046 |
| Ama87I | CYCGRG | 1 cut(s) | 1784 |
| ApaLI | GTGCAC | 2 cut(s) | 761, 1877 |
| ApeKI | GCWGC | 7 cut(s) | 33, 862, 921, 1252, 1507, 2836, 3020 |
| ApoI | RAATTY | 9 cut(s) | 68, 117, 202, 1581, 1943, 2300, 2500, 2592, 2743 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2891, 2923, 2990, 3022 |
| AseI | ATTAAT | 2 cut(s) | 1293, 1535 |
| AsiGI | ACCGGT | 1 cut(s) | 1881 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 646, 1518, 2747 |
| AspA2I | CCTAGG | 1 cut(s) | 230 |
| AspLEI | GCGC | 3 cut(s) | 94, 409, 1682 |
| AspS9I | GGNCC | 5 cut(s) | 719, 1223, 1408, 1890, 2961 |
| AsuHPI | GGTGA | 3 cut(s) | 327, 596, 3023 |
| AsuII | TTCGAA | 1 cut(s) | 59 |
| AvaI | CYCGRG | 1 cut(s) | 1784 |
| AvaII | GGWCC | 2 cut(s) | 719, 1223 |
| AvrII | CCTAGG | 1 cut(s) | 230 |
| BaeGI | GKGCMC | 2 cut(s) | 765, 1881 |
| BalI | TGGCCA | 3 cut(s) | 737, 989, 1167 |
| BamHI | GGATCC | 1 cut(s) | 2234 |
| BanII | GRGCYC | 1 cut(s) | 2607 |
| BbsI | GAAGAC | 1 cut(s) | 336 |
| Bbv12I | GWGCWC | 3 cut(s) | 765, 1808, 1881 |
| BbvI | GCAGC | 7 cut(s) | 45, 874, 933, 1239, 1494, 2823, 3032 |
| BceAI | ACGGC | 2 cut(s) | 227, 2747 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1868, 1902, 2741, 2775 |
| BciT130I | CCWGG | 2 cut(s) | 2318, 3056 |
| BcoDI | GTCTC | 5 cut(s) | 146, 1125, 1488, 2281, 2615 |
| BfaI | CTAG | 8 cut(s) | 194, 231, 705, 1188, 1868, 2031, 2157, 2508 |
| BfmI | CTRYAG | 3 cut(s) | 2004, 2704, 2837 |
| BfoI | RGCGCY | 1 cut(s) | 95 |
| BfrI | CTTAAG | 1 cut(s) | 1745 |
| BfuAI | ACCTGC | 1 cut(s) | 2830 |
| BglII | AGATCT | 1 cut(s) | 1266 |
| BisI | GCNGC | 8 cut(s) | 34, 863, 922, 1250, 1253, 1508, 2837, 3021 |
| BlnI | CCTAGG | 1 cut(s) | 230 |
| BlsI | GCNGC | 8 cut(s) | 35, 864, 923, 1251, 1254, 1509, 2838, 3022 |
| Bme1390I | CCNGG | 2 cut(s) | 2318, 3056 |
| Bme18I | GGWCC | 2 cut(s) | 719, 1223 |
| BmeT110I | CYCGRG | 1 cut(s) | 1784 |
| BmgT120I | GGNCC | 5 cut(s) | 719, 1223, 1408, 1890, 2961 |
| BmiI | GGNNCC | 5 cut(s) | 872, 1224, 1225, 1409, 2236 |
| BmrFI | CCNGG | 2 cut(s) | 2318, 3056 |
| BmsI | GCATC | 5 cut(s) | 390, 1345, 1456, 1984, 2447 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2585 |
| BpiI | GAAGAC | 1 cut(s) | 336 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1211, 1243, 2790, 2822 |
| BpmI | CTGGAG | 2 cut(s) | 387, 878 |
| Bpu14I | TTCGAA | 1 cut(s) | 59 |
| BpuEI | CTTGAG | 3 cut(s) | 532, 1469, 2042 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2187 |
| BsaHI | GRCGYC | 2 cut(s) | 5, 2901 |
| BsaI | GGTCTC | 1 cut(s) | 2281 |
| BsaJI | CCNNGG | 7 cut(s) | 230, 338, 1023, 1403, 2316, 2317, 2657 |
| BsaWI | WCCGGW | 1 cut(s) | 1881 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1135, 1165 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 2408, 2453, 2640, 2773, 2910 |
| Bse118I | RCCGGY | 2 cut(s) | 1410, 1881 |
| Bse3DI | GCAATG | 2 cut(s) | 872, 1244 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2187 |
| BseBI | CCWGG | 2 cut(s) | 2318, 3056 |
| BseDI | CCNNGG | 7 cut(s) | 230, 338, 1023, 1403, 2316, 2317, 2657 |
| BseGI | GGATG | 9 cut(s) | 385, 405, 1200, 1336, 1922, 2462, 2479, 2558, 2611 |
| BseJI | GATNNNNATC | 1 cut(s) | 2187 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 2408, 2453, 2640, 2773, 2910 |
| BseMI | GCAATG | 2 cut(s) | 872, 1244 |
| BseMII | CTCAG | 2 cut(s) | 1136, 1226 |
| BseRI | GAGGAG | 2 cut(s) | 28, 37 |
| BseSI | GKGCMC | 2 cut(s) | 765, 1881 |
| BseXI | GCAGC | 7 cut(s) | 45, 874, 933, 1239, 1494, 2823, 3032 |
| BsgI | GTGCAG | 2 cut(s) | 52, 1844 |
| Bsh1236I | CGCG | 2 cut(s) | 99, 132 |
| BshTI | ACCGGT | 1 cut(s) | 1881 |
| BsiHKAI | GWGCWC | 3 cut(s) | 765, 1808, 1881 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1784 |
| BsiSI | CCGG | 3 cut(s) | 1411, 1882, 3024 |
| BsiWI | CGTACG | 1 cut(s) | 2970 |
| BslFI | GGGAC | 1 cut(s) | 1209 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 2408, 2453, 2640, 2773, 2910 |
| BsmAI | GTCTC | 5 cut(s) | 146, 1125, 1488, 2281, 2615 |
| BsmFI | GGGAC | 1 cut(s) | 1209 |
| BsmI | GAATGC | 4 cut(s) | 1509, 1518, 2460, 2775 |
| Bso31I | GGTCTC | 1 cut(s) | 2281 |
| BsoBI | CYCGRG | 1 cut(s) | 1784 |
| Bsp119I | TTCGAA | 1 cut(s) | 59 |
| Bsp1286I | GDGCHC | 4 cut(s) | 765, 1808, 1881, 2607 |
| Bsp1407I | TGTACA | 1 cut(s) | 221 |
| Bsp19I | CCATGG | 1 cut(s) | 2657 |
| BspACI | CCGC | 3 cut(s) | 97, 182, 1249 |
| BspCNI | CTCAG | 2 cut(s) | 1135, 1227 |
| BspFNI | CGCG | 2 cut(s) | 99, 132 |
| BspHI | TCATGA | 5 cut(s) | 775, 796, 945, 2353, 3046 |
| BspLI | GGNNCC | 5 cut(s) | 872, 1224, 1225, 1409, 2236 |
| BspMAI | CTGCAG | 1 cut(s) | 2841 |
| BspMI | ACCTGC | 1 cut(s) | 2830 |
| BspPI | GGATC | 7 cut(s) | 579, 1292, 1928, 2229, 2242, 2513, 3046 |
| BspT104I | TTCGAA | 1 cut(s) | 59 |
| BspTI | CTTAAG | 1 cut(s) | 1745 |
| BspTNI | GGTCTC | 1 cut(s) | 2281 |
| BsrDI | GCAATG | 2 cut(s) | 872, 1244 |
| BsrFI | RCCGGY | 2 cut(s) | 1410, 1881 |
| BsrGI | TGTACA | 1 cut(s) | 221 |
| BssAI | RCCGGY | 2 cut(s) | 1410, 1881 |
| BssECI | CCNNGG | 7 cut(s) | 230, 338, 1023, 1403, 2316, 2317, 2657 |
| BssNI | GRCGYC | 2 cut(s) | 5, 2901 |
| BssT1I | CCWWGG | 5 cut(s) | 230, 338, 1023, 1403, 2657 |
| Bst2UI | CCWGG | 2 cut(s) | 2318, 3056 |
| Bst4CI | ACNGT | 5 cut(s) | 12, 1076, 1721, 2708, 3035 |
| Bst6I | CTCTTC | 2 cut(s) | 654, 2876 |
| BstACI | GRCGYC | 2 cut(s) | 5, 2901 |
| BstAFI | CTTAAG | 1 cut(s) | 1745 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1598, 2256 |
| BstAUI | TGTACA | 1 cut(s) | 221 |
| BstBI | TTCGAA | 1 cut(s) | 59 |
| BstC8I | GCNNGC | 6 cut(s) | 173, 405, 603, 2399, 2775, 2905 |
| BstDEI | CTNAG | 5 cut(s) | 1116, 1122, 1235, 1284, 2716 |
| BstDSI | CCRYGG | 1 cut(s) | 2657 |
| BstF5I | GGATG | 9 cut(s) | 385, 405, 1200, 1336, 1922, 2462, 2479, 2558, 2611 |
| BstFNI | CGCG | 2 cut(s) | 99, 132 |
| BstH2I | RGCGCY | 1 cut(s) | 95 |
| BstHHI | GCGC | 3 cut(s) | 94, 409, 1682 |
| BstMAI | GTCTC | 5 cut(s) | 146, 1125, 1488, 2281, 2615 |
| BstNI | CCWGG | 2 cut(s) | 2318, 3056 |
| BstNSI | RCATGY | 3 cut(s) | 407, 1844, 1971 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2585 |
| BstSCI | CCNGG | 2 cut(s) | 2316, 3054 |
| BstSFI | CTRYAG | 3 cut(s) | 2004, 2704, 2837 |
| BstSLI | GKGCMC | 2 cut(s) | 765, 1881 |
| BstUI | CGCG | 2 cut(s) | 99, 132 |
| BstV1I | GCAGC | 7 cut(s) | 45, 874, 933, 1239, 1494, 2823, 3032 |
| BstV2I | GAAGAC | 1 cut(s) | 336 |
| BstX2I | RGATCY | 4 cut(s) | 571, 1266, 2234, 3051 |
| BstYI | RGATCY | 4 cut(s) | 571, 1266, 2234, 3051 |
| BtgI | CCRYGG | 1 cut(s) | 2657 |
| BtgZI | GCGATG | 1 cut(s) | 2412 |
| BtsCI | GGATG | 9 cut(s) | 385, 405, 1200, 1336, 1922, 2462, 2479, 2558, 2611 |
| BtsIMutI | CAGTG | 8 cut(s) | 854, 930, 1881, 2376, 2448, 2541, 2576, 2713 |
| BveI | ACCTGC | 1 cut(s) | 2830 |
| Cac8I | GCNNGC | 6 cut(s) | 173, 405, 603, 2399, 2775, 2905 |
| CciI | TCATGA | 5 cut(s) | 775, 796, 945, 2353, 3046 |
| CfoI | GCGC | 3 cut(s) | 94, 409, 1682 |
| Cfr10I | RCCGGY | 2 cut(s) | 1410, 1881 |
| Cfr13I | GGNCC | 5 cut(s) | 719, 1223, 1408, 1890, 2961 |
| CseI | GACGC | 3 cut(s) | 121, 2325, 2909 |
| Csp6I | GTAC | 6 cut(s) | 222, 847, 1232, 1481, 2057, 2971 |
| CspAI | ACCGGT | 1 cut(s) | 1881 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 979, 1014 |
| CviQI | GTAC | 6 cut(s) | 222, 847, 1232, 1481, 2057, 2971 |
| DdeI | CTNAG | 5 cut(s) | 1116, 1122, 1235, 1284, 2716 |
| DraI | TTTAAA | 2 cut(s) | 358, 901 |
| EaeI | YGGCCR | 4 cut(s) | 316, 735, 987, 1165 |
| Eam1104I | CTCTTC | 2 cut(s) | 654, 2876 |
| EarI | CTCTTC | 2 cut(s) | 654, 2876 |
| Eco130I | CCWWGG | 5 cut(s) | 230, 338, 1023, 1403, 2657 |
| Eco24I | GRGCYC | 1 cut(s) | 2607 |
| Eco31I | GGTCTC | 1 cut(s) | 2281 |
| Eco32I | GATATC | 1 cut(s) | 308 |
| Eco47I | GGWCC | 2 cut(s) | 719, 1223 |
| Eco57I | CTGAAG | 4 cut(s) | 899, 1247, 1362, 2979 |
| Eco88I | CYCGRG | 1 cut(s) | 1784 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1223 |
| EcoRII | CCWGG | 2 cut(s) | 2316, 3054 |
| EcoRV | GATATC | 1 cut(s) | 308 |
| EcoT14I | CCWWGG | 5 cut(s) | 230, 338, 1023, 1403, 2657 |
| EcoT22I | ATGCAT | 3 cut(s) | 405, 1360, 2462 |
| EcoT38I | GRGCYC | 1 cut(s) | 2607 |
| ErhI | CCWWGG | 5 cut(s) | 230, 338, 1023, 1403, 2657 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 548, 580, 634, 666, 1506, 1538, 2720, 2752 |
| FaqI | GGGAC | 1 cut(s) | 1209 |
| FauNDI | CATATG | 1 cut(s) | 2617 |
| FblI | GTMKAC | 1 cut(s) | 1904 |
| Fnu4HI | GCNGC | 8 cut(s) | 34, 863, 922, 1250, 1253, 1508, 2837, 3021 |
| FokI | GGATG | 9 cut(s) | 392, 412, 1187, 1323, 1909, 2469, 2486, 2545, 2598 |
| FriOI | GRGCYC | 1 cut(s) | 2607 |
| Fsp4HI | GCNGC | 8 cut(s) | 34, 863, 922, 1250, 1253, 1508, 2837, 3021 |
| FspAI | RTGCGCAY | 1 cut(s) | 1681 |
| FspBI | CTAG | 8 cut(s) | 194, 231, 705, 1188, 1868, 2031, 2157, 2508 |
| FspI | TGCGCA | 1 cut(s) | 1681 |
| GlaI | GCGC | 3 cut(s) | 93, 408, 1681 |
| GluI | GCNGC | 8 cut(s) | 34, 863, 922, 1250, 1253, 1508, 2837, 3021 |
| GsuI | CTGGAG | 2 cut(s) | 387, 878 |
| HaeII | RGCGCY | 1 cut(s) | 95 |
| HapII | CCGG | 3 cut(s) | 1411, 1882, 3024 |
| HgaI | GACGC | 3 cut(s) | 121, 2325, 2909 |
| HhaI | GCGC | 3 cut(s) | 94, 409, 1682 |
| Hin1I | GRCGYC | 2 cut(s) | 5, 2901 |
| Hin6I | GCGC | 3 cut(s) | 92, 407, 1680 |
| HinP1I | GCGC | 3 cut(s) | 92, 407, 1680 |
| HincII | GTYRAC | 1 cut(s) | 1973 |
| HindII | GTYRAC | 1 cut(s) | 1973 |
| HindIII | AAGCTT | 3 cut(s) | 1100, 1305, 2729 |
| HpaII | CCGG | 3 cut(s) | 1411, 1882, 3024 |
| HphI | GGTGA | 3 cut(s) | 327, 596, 3023 |
| Hpy166II | GTNNAC | 7 cut(s) | 224, 587, 763, 907, 1879, 1905, 1973 |
| Hpy8I | GTNNAC | 7 cut(s) | 224, 587, 763, 907, 1879, 1905, 1973 |
| Hpy99I | CGWCG | 4 cut(s) | 16, 28, 31, 55 |
| HpyCH4III | ACNGT | 5 cut(s) | 12, 1076, 1721, 2708, 3035 |
| HpyCH4IV | ACGT | 5 cut(s) | 23, 614, 845, 1699, 2973 |
| HpyF3I | CTNAG | 5 cut(s) | 1116, 1122, 1235, 1284, 2716 |
| HpySE526I | ACGT | 5 cut(s) | 23, 614, 845, 1699, 2973 |
| Hsp92I | GRCGYC | 2 cut(s) | 5, 2901 |
| HspAI | GCGC | 3 cut(s) | 92, 407, 1680 |
| KflI | GGGWCCC | 1 cut(s) | 1223 |
| LmnI | GCTCC | 5 cut(s) | 41, 99, 859, 2074, 2333 |
| Lsp1109I | GCAGC | 7 cut(s) | 45, 874, 933, 1239, 1494, 2823, 3032 |
| LweI | GCATC | 5 cut(s) | 390, 1345, 1456, 1984, 2447 |
| MaeI | CTAG | 8 cut(s) | 194, 231, 705, 1188, 1868, 2031, 2157, 2508 |
| MaeII | ACGT | 5 cut(s) | 23, 614, 845, 1699, 2973 |
| MaeIII | GTNAC | 7 cut(s) | 6, 133, 1012, 1183, 1830, 2371, 3011 |
| MfeI | CAATTG | 1 cut(s) | 2438 |
| MflI | RGATCY | 4 cut(s) | 571, 1266, 2234, 3051 |
| MhlI | GDGCHC | 4 cut(s) | 765, 1808, 1881, 2607 |
| MlsI | TGGCCA | 3 cut(s) | 737, 989, 1167 |
| MluNI | TGGCCA | 3 cut(s) | 737, 989, 1167 |
| MlyI | GAGTC | 5 cut(s) | 701, 1013, 2142, 2564, 2891 |
| MmeI | TCCRAC | 2 cut(s) | 283, 866 |
| Mox20I | TGGCCA | 3 cut(s) | 737, 989, 1167 |
| Mph1103I | ATGCAT | 3 cut(s) | 405, 1360, 2462 |
| MroXI | GAANNNNTTC | 3 cut(s) | 646, 1518, 2747 |
| MscI | TGGCCA | 3 cut(s) | 737, 989, 1167 |
| MslI | CAYNNNNRTG | 7 cut(s) | 795, 801, 950, 1502, 1535, 2196, 2616 |
| Msp20I | TGGCCA | 3 cut(s) | 737, 989, 1167 |
| MspA1I | CMGCKG | 1 cut(s) | 2836 |
| MspCI | CTTAAG | 1 cut(s) | 1745 |
| MspI | CCGG | 3 cut(s) | 1411, 1882, 3024 |
| MspR9I | CCNGG | 2 cut(s) | 2318, 3056 |
| MunI | CAATTG | 1 cut(s) | 2438 |
| Mva1269I | GAATGC | 4 cut(s) | 1509, 1518, 2460, 2775 |
| MvaI | CCWGG | 2 cut(s) | 2318, 3056 |
| MvnI | CGCG | 2 cut(s) | 99, 132 |
| NcoI | CCATGG | 1 cut(s) | 2657 |
| NdeI | CATATG | 1 cut(s) | 2617 |
| NlaIV | GGNNCC | 5 cut(s) | 872, 1224, 1225, 1409, 2236 |
| NmuCI | GTSAC | 5 cut(s) | 6, 133, 1830, 2371, 3011 |
| NsbI | TGCGCA | 1 cut(s) | 1681 |
| NsiI | ATGCAT | 3 cut(s) | 405, 1360, 2462 |
| NspI | RCATGY | 3 cut(s) | 407, 1844, 1971 |
| NspV | TTCGAA | 1 cut(s) | 59 |
| PaeI | GCATGC | 1 cut(s) | 407 |
| PagI | TCATGA | 5 cut(s) | 775, 796, 945, 2353, 3046 |
| PaqCI | CACCTGC | 1 cut(s) | 2830 |
| PasI | CCCWGGG | 1 cut(s) | 2317 |
| PciI | ACATGT | 2 cut(s) | 1840, 1967 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 20, 56, 129 |
| PctI | GAATGC | 4 cut(s) | 1509, 1518, 2460, 2775 |
| PdmI | GAANNNNTTC | 3 cut(s) | 646, 1518, 2747 |
| PfeI | GAWTC | 6 cut(s) | 237, 458, 1043, 1091, 1280, 1871 |
| Pfl23II | CGTACG | 1 cut(s) | 2970 |
| PflFI | GACNNNGTC | 1 cut(s) | 2927 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2408 |
| PfoI | TCCNGGA | 1 cut(s) | 3054 |
| PinAI | ACCGGT | 1 cut(s) | 1881 |
| PkrI | GCNGC | 8 cut(s) | 35, 864, 923, 1251, 1254, 1509, 2838, 3022 |
| PleI | GAGTC | 5 cut(s) | 700, 1012, 2141, 2564, 2890 |
| PpsI | GAGTC | 5 cut(s) | 700, 1012, 2141, 2564, 2890 |
| PpuMI | RGGWCCY | 1 cut(s) | 1223 |
| PscI | ACATGT | 2 cut(s) | 1840, 1967 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2585 |
| PshBI | ATTAAT | 2 cut(s) | 1293, 1535 |
| Psp5II | RGGWCCY | 1 cut(s) | 1223 |
| Psp6I | CCWGG | 2 cut(s) | 2316, 3054 |
| PspGI | CCWGG | 2 cut(s) | 2316, 3054 |
| PspLI | CGTACG | 1 cut(s) | 2970 |
| PspN4I | GGNNCC | 5 cut(s) | 872, 1224, 1225, 1409, 2236 |
| PspPI | GGNCC | 5 cut(s) | 719, 1223, 1408, 1890, 2961 |
| PspPPI | RGGWCCY | 1 cut(s) | 1223 |
| PstI | CTGCAG | 1 cut(s) | 2841 |
| PsuI | RGATCY | 4 cut(s) | 571, 1266, 2234, 3051 |
| PsyI | GACNNNGTC | 1 cut(s) | 2927 |
| PvuII | CAGCTG | 1 cut(s) | 2836 |
| RsaI | GTAC | 6 cut(s) | 223, 848, 1233, 1482, 2058, 2972 |
| RsaNI | GTAC | 6 cut(s) | 222, 847, 1232, 1481, 2057, 2971 |
| RseI | CAYNNNNRTG | 7 cut(s) | 795, 801, 950, 1502, 1535, 2196, 2616 |
| SatI | GCNGC | 8 cut(s) | 34, 863, 922, 1250, 1253, 1508, 2837, 3021 |
| Sau96I | GGNCC | 5 cut(s) | 719, 1223, 1408, 1890, 2961 |
| SchI | GAGTC | 5 cut(s) | 701, 1013, 2142, 2564, 2891 |
| ScrFI | CCNGG | 2 cut(s) | 2318, 3056 |
| SduI | GDGCHC | 4 cut(s) | 765, 1808, 1881, 2607 |
| SfaNI | GCATC | 5 cut(s) | 390, 1345, 1456, 1984, 2447 |
| SfcI | CTRYAG | 3 cut(s) | 2004, 2704, 2837 |
| SfuI | TTCGAA | 1 cut(s) | 59 |
| SinI | GGWCC | 2 cut(s) | 719, 1223 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 795, 801, 950, 1502, 1535, 2196, 2616 |
| SmlI | CTYRAG | 4 cut(s) | 511, 1484, 1745, 2021 |
| SmoI | CTYRAG | 4 cut(s) | 511, 1484, 1745, 2021 |
| SphI | GCATGC | 1 cut(s) | 407 |
| SsiI | CCGC | 3 cut(s) | 97, 182, 1249 |
| SspI | AATATT | 1 cut(s) | 997 |
| SspMI | CTAG | 8 cut(s) | 194, 231, 705, 1188, 1868, 2031, 2157, 2508 |
| StyD4I | CCNGG | 2 cut(s) | 2316, 3054 |
| StyI | CCWWGG | 5 cut(s) | 230, 338, 1023, 1403, 2657 |
| TaaI | ACNGT | 5 cut(s) | 12, 1076, 1721, 2708, 3035 |
| TaiI | ACGT | 5 cut(s) | 26, 617, 848, 1702, 2976 |
| TatI | WGTACW | 3 cut(s) | 221, 1231, 1480 |
| TauI | GCSGC | 1 cut(s) | 1252 |
| TfiI | GAWTC | 6 cut(s) | 237, 458, 1043, 1091, 1280, 1871 |
| TscAI | CASTG | 8 cut(s) | 861, 937, 1881, 2376, 2455, 2548, 2583, 2713 |
| TseFI | GTSAC | 5 cut(s) | 6, 133, 1830, 2371, 3011 |
| TseI | GCWGC | 7 cut(s) | 33, 862, 921, 1252, 1507, 2836, 3020 |
| Tsp45I | GTSAC | 5 cut(s) | 6, 133, 1830, 2371, 3011 |
| TspGWI | ACGGA | 1 cut(s) | 2894 |
| TspRI | CASTG | 8 cut(s) | 861, 937, 1881, 2376, 2455, 2548, 2583, 2713 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2927 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2408 |
| Vha464I | CTTAAG | 1 cut(s) | 1745 |
| VneI | GTGCAC | 2 cut(s) | 761, 1877 |
| VpaK11BI | GGWCC | 2 cut(s) | 719, 1223 |
| VspI | ATTAAT | 2 cut(s) | 1293, 1535 |
| XapI | RAATTY | 9 cut(s) | 68, 117, 202, 1581, 1943, 2300, 2500, 2592, 2743 |
| XbaI | TCTAGA | 1 cut(s) | 193 |
| XceI | RCATGY | 3 cut(s) | 407, 1844, 1971 |
| XmaJI | CCTAGG | 1 cut(s) | 230 |
| XmiI | GTMKAC | 1 cut(s) | 1904 |
| XmnI | GAANNNNTTC | 3 cut(s) | 646, 1518, 2747 |
| XspI | CTAG | 8 cut(s) | 194, 231, 705, 1188, 1868, 2031, 2157, 2508 |
| Zsp2I | ATGCAT | 3 cut(s) | 405, 1360, 2462 |