zinc finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47850 AT2G47850 AT2G47850 AT2G47850 |
| fragaria_vesca | FvH4_2g24990 |
| malus_domestica | MD03G1278900.v1.1 MD03G1279700.v1.1 MD03G1280300.v1.1 MD11G1301200.v1.1 |
| prunus_persica | Prupe.8G254900_v2.0.a1 |
| pyrus_communis | pycom03g22200 pycom11g26400 |
| rosa_chinensis | RchiOBHm_Chr6g0292971 |
| rosa_laevigata | RLG00000011978 |
| rosa_multiflora | Rmu_sc0001788.1_g000009 |
| rosa_roxburghii | Rroxscaffold_7G00174520 |
| rosa_rugosa | Rorug06G0231600 |
| rosa_samantha | Rh6AG344200 Rh6BG351600 Rh6CG358700 Rh6DG344400 |
| rosa_wichuraiana | Rw6G030050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 347 |
| Acc16I | TGCGCA | 1 cut(s) | 732 |
| Acc36I | ACCTGC | 2 cut(s) | 347, 1268 |
| AccB1I | GGYRCC | 2 cut(s) | 635, 700 |
| AccBSI | CCGCTC | 1 cut(s) | 1299 |
| AccII | CGCG | 1 cut(s) | 216 |
| AciI | CCGC | 2 cut(s) | 1215, 1299 |
| AclI | AACGTT | 1 cut(s) | 268 |
| AclWI | GGATC | 4 cut(s) | 357, 370, 1066, 1392 |
| AcsI | RAATTY | 5 cut(s) | 317, 335, 455, 473, 1389 |
| AcyI | GRCGYC | 2 cut(s) | 326, 636 |
| AfaI | GTAC | 4 cut(s) | 125, 405, 499, 1035 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 26, 680, 1358 |
| AflIII | ACRYGT | 1 cut(s) | 1064 |
| AgeI | ACCGGT | 2 cut(s) | 1132, 1238 |
| AgsI | TTSAA | 4 cut(s) | 233, 301, 439, 898 |
| AjnI | CCWGG | 5 cut(s) | 136, 616, 679, 724, 868 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 598, 630 |
| Alw21I | GWGCWC | 6 cut(s) | 145, 1025, 1157, 1171, 1206, 1346 |
| Alw26I | GTCTC | 2 cut(s) | 127, 859 |
| Alw44I | GTGCAC | 1 cut(s) | 1021 |
| AlwI | GGATC | 4 cut(s) | 357, 370, 1066, 1392 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 524 |
| Ama87I | CYCGRG | 5 cut(s) | 662, 800, 945, 1006, 1333 |
| AoxI | GGCC | 1 cut(s) | 852 |
| ApaLI | GTGCAC | 1 cut(s) | 1021 |
| ApeKI | GCWGC | 4 cut(s) | 733, 1175, 1178, 1324 |
| ApoI | RAATTY | 5 cut(s) | 317, 335, 455, 473, 1389 |
| AsiGI | ACCGGT | 2 cut(s) | 1132, 1238 |
| AspLEI | GCGC | 2 cut(s) | 638, 733 |
| AspS9I | GGNCC | 3 cut(s) | 57, 578, 644 |
| AsuC2I | CCSGG | 7 cut(s) | 253, 663, 664, 801, 802, 1007, 1008 |
| AsuHPI | GGTGA | 4 cut(s) | 200, 287, 425, 884 |
| AvaI | CYCGRG | 5 cut(s) | 662, 800, 945, 1006, 1333 |
| AvaII | GGWCC | 3 cut(s) | 57, 578, 644 |
| BaeGI | GKGCMC | 1 cut(s) | 1025 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 489, 522 |
| BamHI | GGATCC | 1 cut(s) | 362 |
| BanI | GGYRCC | 2 cut(s) | 635, 700 |
| BanII | GRGCYC | 4 cut(s) | 713, 1157, 1206, 1346 |
| BbsI | GAAGAC | 1 cut(s) | 986 |
| Bbv12I | GWGCWC | 6 cut(s) | 145, 1025, 1157, 1171, 1206, 1346 |
| BbvCI | CCTCAGC | 2 cut(s) | 486, 980 |
| BbvI | GCAGC | 4 cut(s) | 745, 1165, 1187, 1311 |
| BccI | CCATC | 4 cut(s) | 351, 550, 589, 820 |
| BceAI | ACGGC | 1 cut(s) | 1057 |
| BciT130I | CCWGG | 5 cut(s) | 138, 618, 681, 726, 870 |
| BciVI | GTATCC | 2 cut(s) | 270, 389 |
| BclI | TGATCA | 1 cut(s) | 1075 |
| BcnI | CCSGG | 7 cut(s) | 253, 663, 664, 801, 802, 1007, 1008 |
| BcoDI | GTCTC | 2 cut(s) | 127, 859 |
| BfaI | CTAG | 2 cut(s) | 588, 1121 |
| BfmI | CTRYAG | 2 cut(s) | 63, 828 |
| BfoI | RGCGCY | 1 cut(s) | 639 |
| BfuAI | ACCTGC | 2 cut(s) | 347, 1268 |
| BfuI | GTATCC | 2 cut(s) | 270, 389 |
| BisI | GCNGC | 4 cut(s) | 734, 1176, 1179, 1325 |
| BlsI | GCNGC | 4 cut(s) | 735, 1177, 1180, 1326 |
| Bme18I | GGWCC | 3 cut(s) | 57, 578, 644 |
| BmeT110I | CYCGRG | 5 cut(s) | 662, 800, 945, 1006, 1333 |
| BmgT120I | GGNCC | 3 cut(s) | 57, 578, 644 |
| BmiI | GGNNCC | 6 cut(s) | 59, 364, 637, 702, 957, 1140 |
| BmrI | ACTGGG | 1 cut(s) | 1142 |
| BmsI | GCATC | 4 cut(s) | 58, 530, 1117, 1216 |
| BmuI | ACTGGG | 1 cut(s) | 1142 |
| BpiI | GAAGAC | 1 cut(s) | 986 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 700, 732 |
| BpmI | CTGGAG | 1 cut(s) | 706 |
| Bpu10I | CCTNAGC | 2 cut(s) | 486, 980 |
| BpuEI | CTTGAG | 2 cut(s) | 27, 613 |
| BpuMI | CCSGG | 7 cut(s) | 253, 663, 664, 801, 802, 1007, 1008 |
| Bsa29I | ATCGAT | 1 cut(s) | 92 |
| BsaAI | YACGTR | 1 cut(s) | 1033 |
| BsaHI | GRCGYC | 2 cut(s) | 326, 636 |
| BsaI | GGTCTC | 2 cut(s) | 127, 859 |
| BsaJI | CCNNGG | 7 cut(s) | 225, 661, 662, 663, 800, 801, 1006 |
| BsaWI | WCCGGW | 3 cut(s) | 77, 1132, 1238 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 410, 440 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 26, 680, 1358 |
| Bse118I | RCCGGY | 2 cut(s) | 1132, 1238 |
| Bse1I | ACTGG | 6 cut(s) | 59, 175, 289, 310, 568, 1148 |
| Bse3DI | GCAATG | 1 cut(s) | 455 |
| BseBI | CCWGG | 5 cut(s) | 138, 618, 681, 726, 870 |
| BseCI | ATCGAT | 1 cut(s) | 92 |
| BseDI | CCNNGG | 7 cut(s) | 225, 661, 662, 663, 800, 801, 1006 |
| BseGI | GGATG | 4 cut(s) | 343, 481, 940, 1078 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 26, 680, 1358 |
| BseMI | GCAATG | 1 cut(s) | 455 |
| BseMII | CTCAG | 5 cut(s) | 120, 500, 545, 994, 1332 |
| BseNI | ACTGG | 6 cut(s) | 59, 175, 289, 310, 568, 1148 |
| BseSI | GKGCMC | 1 cut(s) | 1025 |
| BseXI | GCAGC | 4 cut(s) | 745, 1165, 1187, 1311 |
| BsgI | GTGCAG | 2 cut(s) | 510, 569 |
| Bsh1236I | CGCG | 1 cut(s) | 216 |
| Bsh1285I | CGRYCG | 1 cut(s) | 220 |
| BshFI | GGCC | 1 cut(s) | 854 |
| BshNI | GGYRCC | 2 cut(s) | 635, 700 |
| BshTI | ACCGGT | 2 cut(s) | 1132, 1238 |
| BshVI | ATCGAT | 1 cut(s) | 92 |
| BsiEI | CGRYCG | 1 cut(s) | 220 |
| BsiHKAI | GWGCWC | 6 cut(s) | 145, 1025, 1157, 1171, 1206, 1346 |
| BsiHKCI | CYCGRG | 5 cut(s) | 662, 800, 945, 1006, 1333 |
| BsiSI | CCGG | 7 cut(s) | 78, 252, 663, 801, 1007, 1133, 1239 |
| BslFI | GGGAC | 1 cut(s) | 491 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 26, 680, 1358 |
| BsmAI | GTCTC | 2 cut(s) | 127, 859 |
| BsmFI | GGGAC | 1 cut(s) | 491 |
| BsmI | GAATGC | 2 cut(s) | 358, 428 |
| BsnI | GGCC | 1 cut(s) | 854 |
| Bso31I | GGTCTC | 2 cut(s) | 127, 859 |
| BsoBI | CYCGRG | 5 cut(s) | 662, 800, 945, 1006, 1333 |
| Bsp1286I | GDGCHC | 7 cut(s) | 145, 713, 1025, 1157, 1171, 1206, 1346 |
| Bsp143I | GATC | 7 cut(s) | 217, 362, 949, 1058, 1075, 1092, 1397 |
| Bsp68I | TCGCGA | 1 cut(s) | 216 |
| BspACI | CCGC | 2 cut(s) | 1215, 1299 |
| BspANI | GGCC | 1 cut(s) | 854 |
| BspCNI | CTCAG | 5 cut(s) | 121, 499, 544, 993, 1331 |
| BspDI | ATCGAT | 1 cut(s) | 92 |
| BspFNI | CGCG | 1 cut(s) | 216 |
| BspLI | GGNNCC | 6 cut(s) | 59, 364, 637, 702, 957, 1140 |
| BspMAI | CTGCAG | 1 cut(s) | 67 |
| BspMI | ACCTGC | 2 cut(s) | 347, 1268 |
| BspPI | GGATC | 4 cut(s) | 357, 370, 1066, 1392 |
| BspT107I | GGYRCC | 2 cut(s) | 635, 700 |
| BspTNI | GGTCTC | 2 cut(s) | 127, 859 |
| BsrBI | CCGCTC | 1 cut(s) | 1299 |
| BsrDI | GCAATG | 1 cut(s) | 455 |
| BsrFI | RCCGGY | 2 cut(s) | 1132, 1238 |
| BsrI | ACTGG | 6 cut(s) | 59, 175, 289, 310, 568, 1148 |
| BssAI | RCCGGY | 2 cut(s) | 1132, 1238 |
| BssECI | CCNNGG | 7 cut(s) | 225, 661, 662, 663, 800, 801, 1006 |
| BssMI | GATC | 7 cut(s) | 217, 362, 949, 1058, 1075, 1092, 1397 |
| BssNI | GRCGYC | 2 cut(s) | 326, 636 |
| Bst2UI | CCWGG | 5 cut(s) | 138, 618, 681, 726, 870 |
| Bst4CI | ACNGT | 5 cut(s) | 152, 188, 241, 505, 1020 |
| Bst6I | CTCTTC | 2 cut(s) | 615, 1353 |
| BstACI | GRCGYC | 2 cut(s) | 326, 636 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1217, 1226 |
| BstBAI | YACGTR | 1 cut(s) | 1033 |
| BstC8I | GCNNGC | 4 cut(s) | 10, 492, 738, 1213 |
| BstDEI | CTNAG | 5 cut(s) | 129, 486, 531, 980, 1318 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 678, 1356 |
| BstF5I | GGATG | 4 cut(s) | 343, 481, 940, 1078 |
| BstFNI | CGCG | 1 cut(s) | 216 |
| BstH2I | RGCGCY | 1 cut(s) | 639 |
| BstHHI | GCGC | 2 cut(s) | 638, 733 |
| BstKTI | GATC | 7 cut(s) | 220, 365, 952, 1061, 1078, 1095, 1400 |
| BstMAI | GTCTC | 2 cut(s) | 127, 859 |
| BstMBI | GATC | 7 cut(s) | 217, 362, 949, 1058, 1075, 1092, 1397 |
| BstMCI | CGRYCG | 1 cut(s) | 220 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 737, 746, 981, 1136, 1175, 1217, 1226 |
| BstNI | CCWGG | 5 cut(s) | 138, 618, 681, 726, 870 |
| BstNSI | RCATGY | 2 cut(s) | 166, 1068 |
| BstSFI | CTRYAG | 2 cut(s) | 63, 828 |
| BstSLI | GKGCMC | 1 cut(s) | 1025 |
| BstSNI | TACGTA | 1 cut(s) | 1033 |
| BstUI | CGCG | 1 cut(s) | 216 |
| BstV1I | GCAGC | 4 cut(s) | 745, 1165, 1187, 1311 |
| BstV2I | GAAGAC | 1 cut(s) | 986 |
| BstX2I | RGATCY | 1 cut(s) | 362 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1301 |
| BstYI | RGATCY | 1 cut(s) | 362 |
| Bsu15I | ATCGAT | 1 cut(s) | 92 |
| BsuI | GTATCC | 2 cut(s) | 270, 389 |
| BsuRI | GGCC | 1 cut(s) | 854 |
| BsuTUI | ATCGAT | 1 cut(s) | 92 |
| BtsCI | GGATG | 4 cut(s) | 343, 481, 940, 1078 |
| BtsIMutI | CAGTG | 1 cut(s) | 1155 |
| BtuMI | TCGCGA | 1 cut(s) | 216 |
| BveI | ACCTGC | 2 cut(s) | 347, 1268 |
| Cac8I | GCNNGC | 4 cut(s) | 10, 492, 738, 1213 |
| CaiI | CAGNNNCTG | 1 cut(s) | 524 |
| CfoI | GCGC | 2 cut(s) | 638, 733 |
| Cfr10I | RCCGGY | 2 cut(s) | 1132, 1238 |
| Cfr13I | GGNCC | 3 cut(s) | 57, 578, 644 |
| Cfr9I | CCCGGG | 3 cut(s) | 662, 800, 1006 |
| ClaI | ATCGAT | 1 cut(s) | 92 |
| CseI | GACGC | 3 cut(s) | 315, 964, 1101 |
| CsiI | ACCWGGT | 2 cut(s) | 136, 868 |
| Csp6I | GTAC | 4 cut(s) | 124, 404, 498, 1034 |
| CspAI | ACCGGT | 2 cut(s) | 1132, 1238 |
| CviAII | CATG | 6 cut(s) | 163, 285, 330, 367, 1065, 1234 |
| CviQI | GTAC | 4 cut(s) | 124, 404, 498, 1034 |
| DdeI | CTNAG | 5 cut(s) | 129, 486, 531, 980, 1318 |
| DinI | GGCGCC | 1 cut(s) | 637 |
| DpnI | GATC | 7 cut(s) | 219, 364, 951, 1060, 1077, 1094, 1399 |
| DpnII | GATC | 7 cut(s) | 217, 362, 949, 1058, 1075, 1092, 1397 |
| Eam1104I | CTCTTC | 2 cut(s) | 615, 1353 |
| EarI | CTCTTC | 2 cut(s) | 615, 1353 |
| Ecl136II | GAGCTC | 3 cut(s) | 1155, 1204, 1344 |
| Eco105I | TACGTA | 1 cut(s) | 1033 |
| Eco147I | AGGCCT | 1 cut(s) | 854 |
| Eco24I | GRGCYC | 4 cut(s) | 713, 1157, 1206, 1346 |
| Eco31I | GGTCTC | 2 cut(s) | 127, 859 |
| Eco47I | GGWCC | 3 cut(s) | 57, 578, 644 |
| Eco53kI | GAGCTC | 3 cut(s) | 1155, 1204, 1344 |
| Eco88I | CYCGRG | 5 cut(s) | 662, 800, 945, 1006, 1333 |
| EcoICRI | GAGCTC | 3 cut(s) | 1155, 1204, 1344 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 678, 1356 |
| EcoRII | CCWGG | 5 cut(s) | 136, 616, 679, 724, 868 |
| EcoT38I | GRGCYC | 4 cut(s) | 713, 1157, 1206, 1346 |
| EgeI | GGCGCC | 1 cut(s) | 637 |
| EheI | GGCGCC | 1 cut(s) | 637 |
| FaeI | CATG | 6 cut(s) | 166, 288, 333, 370, 1068, 1237 |
| FaqI | GGGAC | 1 cut(s) | 491 |
| FatI | CATG | 6 cut(s) | 162, 284, 329, 366, 1064, 1233 |
| FbaI | TGATCA | 1 cut(s) | 1075 |
| Fnu4HI | GCNGC | 4 cut(s) | 734, 1176, 1179, 1325 |
| FokI | GGATG | 4 cut(s) | 330, 468, 927, 1065 |
| FriOI | GRGCYC | 4 cut(s) | 713, 1157, 1206, 1346 |
| Fsp4HI | GCNGC | 4 cut(s) | 734, 1176, 1179, 1325 |
| FspBI | CTAG | 2 cut(s) | 588, 1121 |
| FspI | TGCGCA | 1 cut(s) | 732 |
| GlaI | GCGC | 2 cut(s) | 637, 732 |
| GluI | GCNGC | 4 cut(s) | 734, 1176, 1179, 1325 |
| GsuI | CTGGAG | 1 cut(s) | 706 |
| HaeII | RGCGCY | 1 cut(s) | 639 |
| HaeIII | GGCC | 1 cut(s) | 854 |
| HapII | CCGG | 7 cut(s) | 78, 252, 663, 801, 1007, 1133, 1239 |
| HgaI | GACGC | 3 cut(s) | 315, 964, 1101 |
| HhaI | GCGC | 2 cut(s) | 638, 733 |
| Hin1I | GRCGYC | 2 cut(s) | 326, 636 |
| Hin1II | CATG | 6 cut(s) | 166, 288, 333, 370, 1068, 1237 |
| Hin6I | GCGC | 2 cut(s) | 636, 731 |
| HinP1I | GCGC | 2 cut(s) | 636, 731 |
| HinfI | GANTC | 5 cut(s) | 81, 89, 119, 688, 1368 |
| HpaII | CCGG | 7 cut(s) | 78, 252, 663, 801, 1007, 1133, 1239 |
| HphI | GGTGA | 4 cut(s) | 200, 287, 425, 884 |
| Hpy166II | GTNNAC | 3 cut(s) | 278, 875, 1023 |
| Hpy188I | TCNGA | 2 cut(s) | 1097, 1321 |
| Hpy188III | TCNNGA | 8 cut(s) | 50, 146, 215, 263, 860, 947, 1254, 1333 |
| Hpy8I | GTNNAC | 3 cut(s) | 278, 875, 1023 |
| Hpy99I | CGWCG | 1 cut(s) | 1398 |
| HpyAV | CCTTC | 3 cut(s) | 801, 1116, 1194 |
| HpyCH4III | ACNGT | 5 cut(s) | 152, 188, 241, 505, 1020 |
| HpyCH4IV | ACGT | 3 cut(s) | 268, 375, 1032 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 737, 746, 981, 1136, 1175, 1217, 1226 |
| HpyF3I | CTNAG | 5 cut(s) | 129, 486, 531, 980, 1318 |
| HpySE526I | ACGT | 3 cut(s) | 268, 375, 1032 |
| Hsp92I | GRCGYC | 2 cut(s) | 326, 636 |
| Hsp92II | CATG | 6 cut(s) | 166, 288, 333, 370, 1068, 1237 |
| HspAI | GCGC | 2 cut(s) | 636, 731 |
| KasI | GGCGCC | 1 cut(s) | 635 |
| Ksp22I | TGATCA | 1 cut(s) | 1075 |
| Kzo9I | GATC | 7 cut(s) | 217, 362, 949, 1058, 1075, 1092, 1397 |
| LmnI | GCTCC | 4 cut(s) | 52, 148, 431, 1144 |
| Lsp1109I | GCAGC | 4 cut(s) | 745, 1165, 1187, 1311 |
| LweI | GCATC | 4 cut(s) | 58, 530, 1117, 1216 |
| MabI | ACCWGGT | 2 cut(s) | 136, 868 |
| MaeI | CTAG | 2 cut(s) | 588, 1121 |
| MaeII | ACGT | 3 cut(s) | 268, 375, 1032 |
| MaeIII | GTNAC | 3 cut(s) | 200, 552, 766 |
| MalI | GATC | 7 cut(s) | 219, 364, 951, 1060, 1077, 1094, 1399 |
| MbiI | CCGCTC | 1 cut(s) | 1299 |
| MboI | GATC | 7 cut(s) | 217, 362, 949, 1058, 1075, 1092, 1397 |
| MboII | GAAGA | 7 cut(s) | 576, 602, 605, 986, 1179, 1182, 1340 |
| MflI | RGATCY | 1 cut(s) | 362 |
| MhlI | GDGCHC | 7 cut(s) | 145, 713, 1025, 1157, 1171, 1206, 1346 |
| MluCI | AATT | 7 cut(s) | 317, 335, 455, 473, 970, 1308, 1389 |
| Mly113I | GGCGCC | 1 cut(s) | 636 |
| MlyI | GAGTC | 3 cut(s) | 75, 113, 697 |
| MseI | TTAA | 1 cut(s) | 656 |
| MspA1I | CMGCKG | 1 cut(s) | 1178 |
| MspI | CCGG | 7 cut(s) | 78, 252, 663, 801, 1007, 1133, 1239 |
| Mva1269I | GAATGC | 2 cut(s) | 358, 428 |
| MvaI | CCWGG | 5 cut(s) | 138, 618, 681, 726, 870 |
| MvnI | CGCG | 1 cut(s) | 216 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 737, 746, 981, 1136, 1175, 1217, 1226 |
| NarI | GGCGCC | 1 cut(s) | 636 |
| NciI | CCSGG | 7 cut(s) | 253, 663, 664, 801, 802, 1007, 1008 |
| NdeII | GATC | 7 cut(s) | 217, 362, 949, 1058, 1075, 1092, 1397 |
| NlaIII | CATG | 6 cut(s) | 166, 288, 333, 370, 1068, 1237 |
| NlaIV | GGNNCC | 6 cut(s) | 59, 364, 637, 702, 957, 1140 |
| NmeAIII | GCCGAG | 2 cut(s) | 677, 1253 |
| NmuCI | GTSAC | 1 cut(s) | 552 |
| NruI | TCGCGA | 1 cut(s) | 216 |
| NsbI | TGCGCA | 1 cut(s) | 732 |
| NspI | RCATGY | 2 cut(s) | 166, 1068 |
| PaeR7I | CTCGAG | 2 cut(s) | 945, 1333 |
| PaqCI | CACCTGC | 1 cut(s) | 347 |
| PceI | AGGCCT | 1 cut(s) | 854 |
| PciI | ACATGT | 1 cut(s) | 1064 |
| PctI | GAATGC | 2 cut(s) | 358, 428 |
| PfeI | GAWTC | 2 cut(s) | 89, 1368 |
| PinAI | ACCGGT | 2 cut(s) | 1132, 1238 |
| PkrI | GCNGC | 4 cut(s) | 735, 1177, 1180, 1326 |
| Ple19I | CGATCG | 1 cut(s) | 220 |
| PleI | GAGTC | 3 cut(s) | 75, 113, 696 |
| PluTI | GGCGCC | 1 cut(s) | 639 |
| PpsI | GAGTC | 3 cut(s) | 75, 113, 696 |
| Ppu21I | YACGTR | 1 cut(s) | 1033 |
| PscI | ACATGT | 1 cut(s) | 1064 |
| Psp124BI | GAGCTC | 3 cut(s) | 1157, 1206, 1346 |
| Psp1406I | AACGTT | 1 cut(s) | 268 |
| Psp6I | CCWGG | 5 cut(s) | 136, 616, 679, 724, 868 |
| PspGI | CCWGG | 5 cut(s) | 136, 616, 679, 724, 868 |
| PspN4I | GGNNCC | 6 cut(s) | 59, 364, 637, 702, 957, 1140 |
| PspPI | GGNCC | 3 cut(s) | 57, 578, 644 |
| PstI | CTGCAG | 1 cut(s) | 67 |
| PstNI | CAGNNNCTG | 1 cut(s) | 524 |
| PsuI | RGATCY | 1 cut(s) | 362 |
| PvuI | CGATCG | 1 cut(s) | 220 |
| PvuII | CAGCTG | 1 cut(s) | 1178 |
| RruI | TCGCGA | 1 cut(s) | 216 |
| RsaI | GTAC | 4 cut(s) | 125, 405, 499, 1035 |
| RsaNI | GTAC | 4 cut(s) | 124, 404, 498, 1034 |
| SacI | GAGCTC | 3 cut(s) | 1157, 1206, 1346 |
| SaqAI | TTAA | 1 cut(s) | 656 |
| SatI | GCNGC | 4 cut(s) | 734, 1176, 1179, 1325 |
| Sau3AI | GATC | 7 cut(s) | 217, 362, 949, 1058, 1075, 1092, 1397 |
| Sau96I | GGNCC | 3 cut(s) | 57, 578, 644 |
| SchI | GAGTC | 3 cut(s) | 75, 113, 697 |
| SduI | GDGCHC | 7 cut(s) | 145, 713, 1025, 1157, 1171, 1206, 1346 |
| SexAI | ACCWGGT | 2 cut(s) | 136, 868 |
| SfaNI | GCATC | 4 cut(s) | 58, 530, 1117, 1216 |
| SfcI | CTRYAG | 2 cut(s) | 63, 828 |
| SfoI | GGCGCC | 1 cut(s) | 637 |
| Sfr274I | CTCGAG | 2 cut(s) | 945, 1333 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1132 |
| SinI | GGWCC | 3 cut(s) | 57, 578, 644 |
| SlaI | CTCGAG | 2 cut(s) | 945, 1333 |
| SmaI | CCCGGG | 3 cut(s) | 664, 802, 1008 |
| SmlI | CTYRAG | 4 cut(s) | 42, 592, 945, 1333 |
| SmoI | CTYRAG | 4 cut(s) | 42, 592, 945, 1333 |
| SnaBI | TACGTA | 1 cut(s) | 1033 |
| Sse9I | AATT | 7 cut(s) | 317, 335, 455, 473, 970, 1308, 1389 |
| SseBI | AGGCCT | 1 cut(s) | 854 |
| SsiI | CCGC | 2 cut(s) | 1215, 1299 |
| SspDI | GGCGCC | 1 cut(s) | 635 |
| SspMI | CTAG | 2 cut(s) | 588, 1121 |
| SstI | GAGCTC | 3 cut(s) | 1157, 1206, 1346 |
| StuI | AGGCCT | 1 cut(s) | 854 |
| TaaI | ACNGT | 5 cut(s) | 152, 188, 241, 505, 1020 |
| TaiI | ACGT | 3 cut(s) | 271, 378, 1035 |
| TaqI | TCGA | 5 cut(s) | 92, 946, 1196, 1334, 1396 |
| TasI | AATT | 7 cut(s) | 317, 335, 455, 473, 970, 1308, 1389 |
| TfiI | GAWTC | 2 cut(s) | 89, 1368 |
| Tru1I | TTAA | 1 cut(s) | 656 |
| Tru9I | TTAA | 1 cut(s) | 656 |
| TscAI | CASTG | 1 cut(s) | 1155 |
| TseFI | GTSAC | 1 cut(s) | 552 |
| TseI | GCWGC | 4 cut(s) | 733, 1175, 1178, 1324 |
| Tsp45I | GTSAC | 1 cut(s) | 552 |
| TspDTI | ATGAA | 3 cut(s) | 467, 926, 1182 |
| TspMI | CCCGGG | 3 cut(s) | 662, 800, 1006 |
| TspRI | CASTG | 1 cut(s) | 1155 |
| VneI | GTGCAC | 1 cut(s) | 1021 |
| VpaK11BI | GGWCC | 3 cut(s) | 57, 578, 644 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 678, 1356 |
| XapI | RAATTY | 5 cut(s) | 317, 335, 455, 473, 1389 |
| XceI | RCATGY | 2 cut(s) | 166, 1068 |
| XhoI | CTCGAG | 2 cut(s) | 945, 1333 |
| XmaI | CCCGGG | 3 cut(s) | 662, 800, 1006 |
| XspI | CTAG | 2 cut(s) | 588, 1121 |