pycom11g26400

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0009284
Physical Location & Seq
Reverse (-)
28963081 .. 28965517
2437 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g26400.3

Sequence Viewer

Length: 1017 bp
ATGGACTTGTACGGACGAAGCCCCGCCAGAAACGGGTCGAACCAGGAATGGAGCCCCGCCGCCGGTGAGACCGGCCTCGAAGAGCAAATGTGGCATTTGGGGTTGACGAGCAGCGAATCGTACCCGGAGCGACCCGCCGTGCCCAATTGTGTTTACTACATGCGAACCGGGTTCTGTGGATATGGTGGTCGGTGCCGGTACAATCATCCTCGTGATCGTGCCGCTGTCGTGGCAGCTGTAAGAGCTACGGGGGACTACCCAGAGAGAGCGGGGGAACCTATATGTCAGGGTGAGAATGAATGCTCCTACTATTTGAAAACGGGGCAATGCAAATTTGGCATAACCTGTAAATTCCATCACCCGCAGCCTGCTGGAACAGCAATACCGGCTTCTGCACCTCAATTTTATCCACCGGTGCAGTCTCCTTCTGTTGCTTTGGCAGAACAGTATGGGGGGGCATCCACCAGTTTGAGGGTGGCTAGGCCTCCACTATTACCTGGATCATATGTGCAAGGGGCGTACGGTCCTGTCTTAATTCAACCAGGAGTTGTTCCTATTCAGGGTTGGAGTCCTTATTCGGCACCTCTTAGTCCTGTACTATCACCTGGAGCTCAACACACAGTTGGAGCAACTTCTTTATATGGAGTAACACAGCTGTCTTCTCCAACACACGGACTTGCAAGACCTTATACCTCCATACCCTCTTCTATTGGTCCTTCTAGCAGCAACCCGAGTGAACAAGTTTTCCCAGAGAGGCCTGGCGAACTTGAATGCCAGTACTATCTGAAAACTGGGGACTGTAAATATGGAGCATCTTGTAGGTATCATCATCCTCGGGATCGAACTGTACCAAGGATAACTTGTCTCCTTAGCCCGATGGGTCTCCCACTCCGTCCGGGAGTGCAACCGTGTACATTCTACCTGCAAAATGGTCAGTGCAAGTTTGGATCTATCATGCAAATTCGATCATCCAGTGCAGAACATGAGGTACAACCCCTCAGTTTCATCTCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

339

Amino Acids

36.59

Weight (kDa)

8.51

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 930
AccB1I GGYRCC 2 cut(s) 192, 580
AccBSI CCGCTC 1 cut(s) 269
AciI CCGC 7 cut(s) 24, 57, 60, 135, 222, 269, 362
AclWI GGATC 3 cut(s) 508, 846, 955
AcsI RAATTY 3 cut(s) 332, 350, 960
AfaI GTAC 9 cut(s) 11, 122, 200, 521, 597, 779, 849, 913, 990
AfiI CCNNNNNNNGG 5 cut(s) 33, 62, 471, 560, 671
AgeI ACCGGT 1 cut(s) 412
AgsI TTSAA 3 cut(s) 316, 539, 770
AjnI CCWGG 5 cut(s) 42, 496, 541, 604, 757
AloI GAACNNNNNNTCC 2 cut(s) 729, 761
AluBI AGCT 4 cut(s) 236, 245, 611, 655
AluI AGCT 4 cut(s) 236, 245, 611, 655
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 4 cut(s) 62, 426, 869, 887
AlwI GGATC 3 cut(s) 508, 846, 955
Ama87I CYCGRG 2 cut(s) 730, 834
AoxI GGCC 3 cut(s) 73, 482, 755
ApeKI GCWGC 4 cut(s) 111, 233, 364, 723
ApoI RAATTY 3 cut(s) 332, 350, 960
AsiGI ACCGGT 1 cut(s) 412
AspS9I GGNCC 2 cut(s) 524, 713
AsuC2I CCSGG 3 cut(s) 125, 169, 897
AsuHPI GGTGA 4 cut(s) 77, 302, 350, 594
AvaI CYCGRG 2 cut(s) 730, 834
AvaII GGWCC 2 cut(s) 524, 713
BaeGI GKGCMC 1 cut(s) 144
BanI GGYRCC 2 cut(s) 192, 580
BanII GRGCYC 2 cut(s) 56, 613
BauI CACGAG 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 613
BbvI GCAGC 4 cut(s) 123, 245, 376, 735
BccI CCATC 2 cut(s) 363, 871
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 5 cut(s) 44, 498, 543, 606, 759
BcnI CCSGG 3 cut(s) 125, 169, 897
BcoDI GTCTC 4 cut(s) 62, 426, 869, 887
BfaI CTAG 2 cut(s) 480, 720
BfuAI ACCTGC 1 cut(s) 930
BisI GCNGC 6 cut(s) 60, 112, 222, 234, 365, 724
BlsI GCNGC 6 cut(s) 61, 113, 223, 235, 366, 725
BmcAI AGTACT 1 cut(s) 779
Bme1390I CCNGG 8 cut(s) 44, 125, 169, 498, 543, 606, 759, 897
Bme18I GGWCC 2 cut(s) 524, 713
BmeT110I CYCGRG 2 cut(s) 730, 834
BmgT120I GGNCC 2 cut(s) 524, 713
BmiI GGNNCC 4 cut(s) 53, 194, 276, 582
BmrFI CCNGG 8 cut(s) 44, 125, 169, 498, 543, 606, 759, 897
BmrI ACTGGG 1 cut(s) 801
BmsI GCATC 2 cut(s) 467, 821
BmuI ACTGGG 1 cut(s) 801
BpiI GAAGAC 1 cut(s) 651
BpmI CTGGAG 1 cut(s) 627
Bpu10I CCTNAGC 1 cut(s) 869
BpuMI CCSGG 3 cut(s) 125, 169, 897
BsaI GGTCTC 2 cut(s) 62, 887
BsaJI CCNNGG 2 cut(s) 833, 851
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 62, 471, 560, 671
Bse118I RCCGGY 5 cut(s) 62, 71, 195, 385, 412
Bse1I ACTGG 4 cut(s) 465, 775, 796, 972
Bse3DI GCAATG 1 cut(s) 332
BseBI CCWGG 5 cut(s) 44, 498, 543, 606, 759
BseDI CCNNGG 2 cut(s) 833, 851
BseGI GGATG 4 cut(s) 205, 458, 829, 968
BseLI CCNNNNNNNGG 5 cut(s) 33, 62, 471, 560, 671
BseMI GCAATG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 1012
BseNI ACTGG 4 cut(s) 465, 775, 796, 972
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 4 cut(s) 123, 245, 376, 735
BsgI GTGCAG 3 cut(s) 378, 437, 996
BshFI GGCC 3 cut(s) 75, 484, 757
BshNI GGYRCC 2 cut(s) 192, 580
BshTI ACCGGT 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 613
BsiHKCI CYCGRG 2 cut(s) 730, 834
BsiSI CCGG 8 cut(s) 63, 72, 125, 168, 196, 386, 413, 896
BsiWI CGTACG 1 cut(s) 519
BslFI GGGAC 2 cut(s) 266, 809
BslI CCNNNNNNNGG 5 cut(s) 33, 62, 471, 560, 671
BsmAI GTCTC 4 cut(s) 62, 426, 869, 887
BsmFI GGGAC 2 cut(s) 266, 809
BsmI GAATGC 2 cut(s) 305, 776
BsnI GGCC 3 cut(s) 75, 484, 757
Bso31I GGTCTC 2 cut(s) 62, 887
BsoBI CYCGRG 2 cut(s) 730, 834
Bsp1286I GDGCHC 3 cut(s) 56, 144, 613
Bsp1407I TGTACA 1 cut(s) 911
Bsp143I GATC 5 cut(s) 214, 500, 838, 947, 965
BspACI CCGC 7 cut(s) 24, 57, 60, 135, 222, 269, 362
BspANI GGCC 3 cut(s) 75, 484, 757
BspCNI CTCAG 1 cut(s) 1011
BspLI GGNNCC 4 cut(s) 53, 194, 276, 582
BspMI ACCTGC 1 cut(s) 930
BspPI GGATC 3 cut(s) 508, 846, 955
BspQI GCTCTTC 1 cut(s) 75
BspT107I GGYRCC 2 cut(s) 192, 580
BspTNI GGTCTC 2 cut(s) 62, 887
BsrBI CCGCTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 332
BsrFI RCCGGY 5 cut(s) 62, 71, 195, 385, 412
BsrGI TGTACA 1 cut(s) 911
BsrI ACTGG 4 cut(s) 465, 775, 796, 972
BssAI RCCGGY 5 cut(s) 62, 71, 195, 385, 412
BssECI CCNNGG 2 cut(s) 833, 851
BssMI GATC 5 cut(s) 214, 500, 838, 947, 965
BssSI CACGAG 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 851
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 5 cut(s) 44, 498, 543, 606, 759
Bst4CI ACNGT 6 cut(s) 447, 524, 622, 800, 847, 909
Bst6I CTCTTC 2 cut(s) 75, 709
BstAUI TGTACA 1 cut(s) 911
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 3 cut(s) 587, 869, 998
BstF5I GGATG 4 cut(s) 205, 458, 829, 968
BstKTI GATC 5 cut(s) 217, 503, 841, 950, 968
BstMAI GTCTC 4 cut(s) 62, 426, 869, 887
BstMBI GATC 5 cut(s) 214, 500, 838, 947, 965
BstMWI GCNNNNNNNGC 6 cut(s) 91, 230, 242, 336, 377, 386
BstNI CCWGG 5 cut(s) 44, 498, 543, 606, 759
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 8 cut(s) 42, 123, 167, 496, 541, 604, 757, 895
BstSLI GKGCMC 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 123, 245, 376, 735
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 1 cut(s) 947
BstYI RGATCY 1 cut(s) 947
BsuRI GGCC 3 cut(s) 75, 484, 757
BtsCI GGATG 4 cut(s) 205, 458, 829, 968
BtsIMutI CAGTG 2 cut(s) 941, 979
BveI ACCTGC 1 cut(s) 930
Cac8I GCNNGC 1 cut(s) 369
Cfr10I RCCGGY 5 cut(s) 62, 71, 195, 385, 412
Cfr13I GGNCC 2 cut(s) 524, 713
Csp6I GTAC 9 cut(s) 10, 121, 199, 520, 596, 778, 848, 912, 989
CspAI ACCGGT 1 cut(s) 412
CviAII CATG 3 cut(s) 160, 955, 983
CviQI GTAC 9 cut(s) 10, 121, 199, 520, 596, 778, 848, 912, 989
DdeI CTNAG 3 cut(s) 587, 869, 998
DpnI GATC 5 cut(s) 216, 502, 840, 949, 967
DpnII GATC 5 cut(s) 214, 500, 838, 947, 965
Eam1104I CTCTTC 2 cut(s) 75, 709
EarI CTCTTC 2 cut(s) 75, 709
Ecl136II GAGCTC 1 cut(s) 611
Eco130I CCWWGG 1 cut(s) 851
Eco147I AGGCCT 2 cut(s) 484, 757
Eco24I GRGCYC 2 cut(s) 56, 613
Eco31I GGTCTC 2 cut(s) 62, 887
Eco47I GGWCC 2 cut(s) 524, 713
Eco53kI GAGCTC 1 cut(s) 611
Eco88I CYCGRG 2 cut(s) 730, 834
EcoICRI GAGCTC 1 cut(s) 611
EcoRII CCWGG 5 cut(s) 42, 496, 541, 604, 757
EcoT14I CCWWGG 1 cut(s) 851
EcoT38I GRGCYC 2 cut(s) 56, 613
ErhI CCWWGG 1 cut(s) 851
FaeI CATG 3 cut(s) 163, 958, 986
FalI AAGNNNNNCTT 2 cut(s) 844, 876
FaqI GGGAC 2 cut(s) 266, 809
FatI CATG 3 cut(s) 159, 954, 982
FauI CCCGC 5 cut(s) 31, 64, 142, 262, 369
FauNDI CATATG 1 cut(s) 505
Fnu4HI GCNGC 6 cut(s) 60, 112, 222, 234, 365, 724
FokI GGATG 4 cut(s) 192, 445, 816, 955
FriOI GRGCYC 2 cut(s) 56, 613
Fsp4HI GCNGC 6 cut(s) 60, 112, 222, 234, 365, 724
FspBI CTAG 2 cut(s) 480, 720
GluI GCNGC 6 cut(s) 60, 112, 222, 234, 365, 724
GsuI CTGGAG 1 cut(s) 627
HaeIII GGCC 3 cut(s) 75, 484, 757
HapII CCGG 8 cut(s) 63, 72, 125, 168, 196, 386, 413, 896
Hin1II CATG 3 cut(s) 163, 958, 986
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 2 cut(s) 116, 568
HpaII CCGG 8 cut(s) 63, 72, 125, 168, 196, 386, 413, 896
HphI GGTGA 4 cut(s) 77, 302, 350, 594
Hpy166II GTNNAC 4 cut(s) 105, 154, 737, 912
Hpy188I TCNGA 1 cut(s) 786
Hpy188III TCNNGA 2 cut(s) 212, 836
Hpy8I GTNNAC 4 cut(s) 105, 154, 737, 912
HpyAV CCTTC 2 cut(s) 435, 726
HpyCH4III ACNGT 6 cut(s) 447, 524, 622, 800, 847, 909
HpyF10VI GCNNNNNNNGC 6 cut(s) 91, 230, 242, 336, 377, 386
HpyF3I CTNAG 3 cut(s) 587, 869, 998
Hsp92II CATG 3 cut(s) 163, 958, 986
Kzo9I GATC 5 cut(s) 214, 500, 838, 947, 965
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 6 cut(s) 51, 127, 308, 608, 626, 809
Lsp1109I GCAGC 4 cut(s) 123, 245, 376, 735
LweI GCATC 2 cut(s) 467, 821
MaeI CTAG 2 cut(s) 480, 720
MaeIII GTNAC 1 cut(s) 646
MalI GATC 5 cut(s) 216, 502, 840, 949, 967
MbiI CCGCTC 1 cut(s) 269
MboI GATC 5 cut(s) 214, 500, 838, 947, 965
MboII GAAGA 3 cut(s) 92, 651, 696
MfeI CAATTG 1 cut(s) 145
MflI RGATCY 1 cut(s) 947
MhlI GDGCHC 3 cut(s) 56, 144, 613
MluCI AATT 6 cut(s) 145, 332, 350, 401, 534, 960
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 3 cut(s) 545, 604, 689
MseI TTAA 1 cut(s) 533
MslI CAYNNNNRTG 1 cut(s) 210
MspA1I CMGCKG 3 cut(s) 224, 236, 655
MspI CCGG 8 cut(s) 63, 72, 125, 168, 196, 386, 413, 896
MspR9I CCNGG 8 cut(s) 44, 125, 169, 498, 543, 606, 759, 897
MunI CAATTG 1 cut(s) 145
Mva1269I GAATGC 2 cut(s) 305, 776
MvaI CCWGG 5 cut(s) 44, 498, 543, 606, 759
MwoI GCNNNNNNNGC 6 cut(s) 91, 230, 242, 336, 377, 386
NciI CCSGG 3 cut(s) 125, 169, 897
NdeI CATATG 1 cut(s) 505
NdeII GATC 5 cut(s) 214, 500, 838, 947, 965
NlaIII CATG 3 cut(s) 163, 958, 986
NlaIV GGNNCC 4 cut(s) 53, 194, 276, 582
NspI RCATGY 1 cut(s) 163
PceI AGGCCT 2 cut(s) 484, 757
PciSI GCTCTTC 1 cut(s) 75
PctI GAATGC 2 cut(s) 305, 776
PfeI GAWTC 1 cut(s) 116
Pfl23II CGTACG 1 cut(s) 519
PfoI TCCNGGA 1 cut(s) 895
PinAI ACCGGT 1 cut(s) 412
PkrI GCNGC 6 cut(s) 61, 113, 223, 235, 366, 725
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 613
Psp6I CCWGG 5 cut(s) 42, 496, 541, 604, 757
PspGI CCWGG 5 cut(s) 42, 496, 541, 604, 757
PspLI CGTACG 1 cut(s) 519
PspN4I GGNNCC 4 cut(s) 53, 194, 276, 582
PspPI GGNCC 2 cut(s) 524, 713
PsrI GAACNNNNNNTAC 2 cut(s) 972, 1004
PsuI RGATCY 1 cut(s) 947
PvuII CAGCTG 2 cut(s) 236, 655
RsaI GTAC 9 cut(s) 11, 122, 200, 521, 597, 779, 849, 913, 990
RsaNI GTAC 9 cut(s) 10, 121, 199, 520, 596, 778, 848, 912, 989
RseI CAYNNNNRTG 1 cut(s) 210
SacI GAGCTC 1 cut(s) 613
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 533
SatI GCNGC 6 cut(s) 60, 112, 222, 234, 365, 724
Sau3AI GATC 5 cut(s) 214, 500, 838, 947, 965
Sau96I GGNCC 2 cut(s) 524, 713
ScaI AGTACT 1 cut(s) 779
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 8 cut(s) 44, 125, 169, 498, 543, 606, 759, 897
SduI GDGCHC 3 cut(s) 56, 144, 613
SfaNI GCATC 2 cut(s) 467, 821
SgrAI CRCCGGYG 2 cut(s) 62, 412
SinI GGWCC 2 cut(s) 524, 713
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 6 cut(s) 145, 332, 350, 401, 534, 960
SseBI AGGCCT 2 cut(s) 484, 757
SsiI CCGC 7 cut(s) 24, 57, 60, 135, 222, 269, 362
SspMI CTAG 2 cut(s) 480, 720
SstI GAGCTC 1 cut(s) 613
StuI AGGCCT 2 cut(s) 484, 757
StyD4I CCNGG 8 cut(s) 42, 123, 167, 496, 541, 604, 757, 895
StyI CCWWGG 1 cut(s) 851
TaaI ACNGT 6 cut(s) 447, 524, 622, 800, 847, 909
TaqI TCGA 4 cut(s) 38, 78, 841, 964
TasI AATT 6 cut(s) 145, 332, 350, 401, 534, 960
TatI WGTACW 3 cut(s) 595, 777, 911
TauI GCSGC 2 cut(s) 62, 224
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 533
Tru9I TTAA 1 cut(s) 533
TscAI CASTG 2 cut(s) 941, 979
TseI GCWGC 4 cut(s) 111, 233, 364, 723
TspDTI ATGAA 2 cut(s) 312, 994
TspGWI ACGGA 3 cut(s) 27, 687, 881
TspRI CASTG 2 cut(s) 941, 979
VpaK11BI GGWCC 2 cut(s) 524, 713
XapI RAATTY 3 cut(s) 332, 350, 960
XceI RCATGY 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XspI CTAG 2 cut(s) 480, 720
ZrmI AGTACT 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.