MD03G1279700.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0009284
Physical Location & Seq
Reverse (-)
36126607 .. 36129009
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1279700.v1.1.491

Sequence Viewer

Length: 702 bp
ATGATAAAAGACATATTCAGTCCCTTAGTACCATCTCCTGGAGCAACTTCTTTATATGGAGTAACACAGCTATCTTCTCCAATACACGGACTTGCAAGCCCTTATACCTCCATACCCTCTTCTGTTGGTCCTTCTAGCAGCAACCGGAGTGAACAAGTTTTCCCAGAGAGGCCTGGCGAACTTGAATGCGAGTATTATCTGAAAACTGGGGACTGTAAATATGGACCATCTTGTAGGTATCATCATCCTCGGGATCGAACTGTACCGAGAATAACGTGTCTCCTTAGTCCGATGGATCTCCCACTCCGTCCGGGAGTGCAGCCGTGTACATTCTACCTGCAAAATGGCCAGTGCAAGTTTGGATCTACATGCAAATTTGACCATCCAGTGCAGAGCATGAGGTGCAACCTCTCAGCTTCATCTCTCGTTGATATGCCTCCTGTTCAATACCCGGTTGGGTCTCTGCTGGCCACCCTGGCTCCATCATCCTCATCATCGGATCTCCGGCCCGAATTACTTTCAGCTTCCAAAAAGGATAGAGTGCCTTCTTCCGGGAACACCTCAAGTAGTTCAGGTGGATTGATTTTTTCAAAGAGCGGTTCTGTTTCACTATCTGATGTGCAACTGTCCAGTCAGATTTCATCCCCTTTGAGCAATAGCAGAAGCACGAGACCAGGTGGCGAGTTTCGTCGATCAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

234

Amino Acids

24.95

Weight (kDa)

8.94

Isoelectric Point (pI)

70.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 60 - 84 2.6e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 105 - 129 7.1e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 345
AccB7I CCANNNNNTGG 1 cut(s) 38
AccBSI CCGCTC 1 cut(s) 597
AciI CCGC 1 cut(s) 597
AclWI GGATC 4 cut(s) 261, 303, 370, 507
AcoI YGGCCR 2 cut(s) 346, 468
AcsI RAATTY 1 cut(s) 374
AfaI GTAC 3 cut(s) 30, 264, 328
AfiI CCNNNNNNNGG 3 cut(s) 38, 86, 551
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 3 cut(s) 185, 446, 591
AjnI CCWGG 4 cut(s) 37, 172, 474, 673
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 3 cut(s) 70, 416, 524
AluI AGCT 3 cut(s) 70, 416, 524
Alw26I GTCTC 3 cut(s) 284, 465, 664
AlwI GGATC 4 cut(s) 261, 303, 370, 507
Ama87I CYCGRG 1 cut(s) 249
AoxI GGCC 4 cut(s) 170, 346, 468, 506
ApeKI GCWGC 2 cut(s) 138, 319
ApoI RAATTY 1 cut(s) 374
AspS9I GGNCC 3 cut(s) 128, 224, 507
AsuC2I CCSGG 3 cut(s) 312, 452, 553
AvaI CYCGRG 1 cut(s) 249
AvaII GGWCC 2 cut(s) 128, 224
BalI TGGCCA 2 cut(s) 348, 470
BauI CACGAG 1 cut(s) 667
BbvI GCAGC 2 cut(s) 150, 331
BccI CCATC 5 cut(s) 40, 235, 286, 390, 490
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 4 cut(s) 39, 174, 476, 675
BcnI CCSGG 3 cut(s) 312, 452, 553
BcoDI GTCTC 3 cut(s) 284, 465, 664
BfaI CTAG 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 345
BglI GCCNNNNNGGC 1 cut(s) 476
BisI GCNGC 2 cut(s) 139, 320
BlsI GCNGC 2 cut(s) 140, 321
Bme1390I CCNGG 7 cut(s) 39, 174, 312, 452, 476, 553, 675
Bme18I GGWCC 2 cut(s) 128, 224
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 3 cut(s) 128, 224, 507
BmiI GGNNCC 1 cut(s) 480
BmrFI CCNGG 7 cut(s) 39, 174, 312, 452, 476, 553, 675
BmrI ACTGGG 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 547
BpuMI CCSGG 3 cut(s) 312, 452, 553
BsaI GGTCTC 2 cut(s) 465, 664
BsaJI CCNNGG 2 cut(s) 248, 474
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 86, 551
Bse1I ACTGG 4 cut(s) 211, 349, 386, 630
BseBI CCWGG 4 cut(s) 39, 174, 476, 675
BseDI CCNNGG 2 cut(s) 248, 474
BseGI GGATG 4 cut(s) 244, 382, 485, 641
BseLI CCNNNNNNNGG 3 cut(s) 38, 86, 551
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 4 cut(s) 211, 349, 386, 630
BseXI GCAGC 2 cut(s) 150, 331
BsgI GTGCAG 2 cut(s) 338, 410
BshFI GGCC 4 cut(s) 172, 348, 470, 508
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 5 cut(s) 145, 311, 452, 505, 552
BslFI GGGAC 2 cut(s) 6, 224
BslI CCNNNNNNNGG 3 cut(s) 38, 86, 551
BsmAI GTCTC 3 cut(s) 284, 465, 664
BsmFI GGGAC 2 cut(s) 6, 224
BsmI GAATGC 1 cut(s) 191
BsnI GGCC 4 cut(s) 172, 348, 470, 508
Bso31I GGTCTC 2 cut(s) 465, 664
BsoBI CYCGRG 1 cut(s) 249
Bsp1407I TGTACA 1 cut(s) 326
Bsp143I GATC 5 cut(s) 253, 295, 362, 499, 692
BspACI CCGC 1 cut(s) 597
BspANI GGCC 4 cut(s) 172, 348, 470, 508
BspCNI CTCAG 1 cut(s) 425
BspLI GGNNCC 1 cut(s) 480
BspMI ACCTGC 1 cut(s) 345
BspPI GGATC 4 cut(s) 261, 303, 370, 507
BspTNI GGTCTC 2 cut(s) 465, 664
BsrBI CCGCTC 1 cut(s) 597
BsrGI TGTACA 1 cut(s) 326
BsrI ACTGG 4 cut(s) 211, 349, 386, 630
BssECI CCNNGG 2 cut(s) 248, 474
BssMI GATC 5 cut(s) 253, 295, 362, 499, 692
BssSI CACGAG 1 cut(s) 667
Bst2BI CACGAG 1 cut(s) 667
Bst2UI CCWGG 4 cut(s) 39, 174, 476, 675
Bst4CI ACNGT 3 cut(s) 215, 262, 627
Bst6I CTCTTC 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 402
BstAUI TGTACA 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 97, 468
BstDEI CTNAG 3 cut(s) 25, 284, 412
BstF5I GGATG 4 cut(s) 244, 382, 485, 641
BstKTI GATC 5 cut(s) 256, 298, 365, 502, 695
BstMAI GTCTC 3 cut(s) 284, 465, 664
BstMBI GATC 5 cut(s) 253, 295, 362, 499, 692
BstMWI GCNNNNNNNGC 2 cut(s) 402, 476
BstNI CCWGG 4 cut(s) 39, 174, 476, 675
BstNSI RCATGY 1 cut(s) 372
BstSCI CCNGG 7 cut(s) 37, 172, 310, 450, 474, 551, 673
BstV1I GCAGC 2 cut(s) 150, 331
BstX2I RGATCY 3 cut(s) 295, 362, 499
BstYI RGATCY 3 cut(s) 295, 362, 499
BsuRI GGCC 4 cut(s) 172, 348, 470, 508
BtsCI GGATG 4 cut(s) 244, 382, 485, 641
BtsIMutI CAGTG 2 cut(s) 356, 393
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 97, 468
Cfr13I GGNCC 3 cut(s) 128, 224, 507
CsiI ACCWGGT 1 cut(s) 673
Csp6I GTAC 3 cut(s) 29, 263, 327
CviAII CATG 2 cut(s) 369, 397
CviQI GTAC 3 cut(s) 29, 263, 327
DdeI CTNAG 3 cut(s) 25, 284, 412
DpnI GATC 5 cut(s) 255, 297, 364, 501, 694
DpnII GATC 5 cut(s) 253, 295, 362, 499, 692
EaeI YGGCCR 2 cut(s) 346, 468
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco147I AGGCCT 1 cut(s) 172
Eco31I GGTCTC 2 cut(s) 465, 664
Eco47I GGWCC 2 cut(s) 128, 224
Eco88I CYCGRG 1 cut(s) 249
EcoRII CCWGG 4 cut(s) 37, 172, 474, 673
FaeI CATG 2 cut(s) 372, 400
FaiI YATR 9 cut(s) 14, 55, 57, 105, 113, 222, 370, 398, 434
FaqI GGGAC 2 cut(s) 6, 224
FatI CATG 2 cut(s) 368, 396
Fnu4HI GCNGC 2 cut(s) 139, 320
FokI GGATG 4 cut(s) 231, 369, 472, 628
Fsp4HI GCNGC 2 cut(s) 139, 320
FspBI CTAG 1 cut(s) 135
GluI GCNGC 2 cut(s) 139, 320
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 4 cut(s) 172, 348, 470, 508
HapII CCGG 5 cut(s) 145, 311, 452, 505, 552
Hin1II CATG 2 cut(s) 372, 400
HpaII CCGG 5 cut(s) 145, 311, 452, 505, 552
Hpy166II GTNNAC 2 cut(s) 152, 327
Hpy188I TCNGA 5 cut(s) 201, 291, 499, 616, 636
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 2 cut(s) 152, 327
Hpy99I CGWCG 1 cut(s) 693
HpyAV CCTTC 2 cut(s) 141, 555
HpyCH4III ACNGT 3 cut(s) 215, 262, 627
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 8 cut(s) 95, 319, 340, 354, 372, 391, 405, 622
HpyF10VI GCNNNNNNNGC 2 cut(s) 402, 476
HpyF3I CTNAG 3 cut(s) 25, 284, 412
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 2 cut(s) 372, 400
Kzo9I GATC 5 cut(s) 253, 295, 362, 499, 692
LmnI GCTCC 2 cut(s) 41, 484
Lsp1109I GCAGC 2 cut(s) 150, 331
MabI ACCWGGT 1 cut(s) 673
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 61
MalI GATC 5 cut(s) 255, 297, 364, 501, 694
MbiI CCGCTC 1 cut(s) 597
MboI GATC 5 cut(s) 253, 295, 362, 499, 692
MboII GAAGA 3 cut(s) 66, 111, 540
MflI RGATCY 3 cut(s) 295, 362, 499
MlsI TGGCCA 2 cut(s) 348, 470
MluCI AATT 3 cut(s) 374, 512, 696
MluNI TGGCCA 2 cut(s) 348, 470
MnlI CCTC 9 cut(s) 118, 127, 162, 258, 393, 419, 447, 499, 571
Mox20I TGGCCA 2 cut(s) 348, 470
MscI TGGCCA 2 cut(s) 348, 470
MseI TTAA 1 cut(s) 700
Msp20I TGGCCA 2 cut(s) 348, 470
MspI CCGG 5 cut(s) 145, 311, 452, 505, 552
MspR9I CCNGG 7 cut(s) 39, 174, 312, 452, 476, 553, 675
Mva1269I GAATGC 1 cut(s) 191
MvaI CCWGG 4 cut(s) 39, 174, 476, 675
MwoI GCNNNNNNNGC 2 cut(s) 402, 476
NciI CCSGG 3 cut(s) 312, 452, 553
NdeII GATC 5 cut(s) 253, 295, 362, 499, 692
NlaIII CATG 2 cut(s) 372, 400
NlaIV GGNNCC 1 cut(s) 480
NspI RCATGY 1 cut(s) 372
PceI AGGCCT 1 cut(s) 172
PctI GAATGC 1 cut(s) 191
PflMI CCANNNNNTGG 1 cut(s) 38
PfoI TCCNGGA 3 cut(s) 37, 310, 551
PkrI GCNGC 2 cut(s) 140, 321
Psp6I CCWGG 4 cut(s) 37, 172, 474, 673
PspGI CCWGG 4 cut(s) 37, 172, 474, 673
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 3 cut(s) 128, 224, 507
PsuI RGATCY 3 cut(s) 295, 362, 499
RsaI GTAC 3 cut(s) 30, 264, 328
RsaNI GTAC 3 cut(s) 29, 263, 327
SaqAI TTAA 1 cut(s) 700
SatI GCNGC 2 cut(s) 139, 320
Sau3AI GATC 5 cut(s) 253, 295, 362, 499, 692
Sau96I GGNCC 3 cut(s) 128, 224, 507
ScrFI CCNGG 7 cut(s) 39, 174, 312, 452, 476, 553, 675
SexAI ACCWGGT 1 cut(s) 673
SinI GGWCC 2 cut(s) 128, 224
SmlI CTYRAG 1 cut(s) 562
SmoI CTYRAG 1 cut(s) 562
Sse9I AATT 3 cut(s) 374, 512, 696
SseBI AGGCCT 1 cut(s) 172
SsiI CCGC 1 cut(s) 597
SspMI CTAG 1 cut(s) 135
StuI AGGCCT 1 cut(s) 172
StyD4I CCNGG 7 cut(s) 37, 172, 310, 450, 474, 551, 673
TaaI ACNGT 3 cut(s) 215, 262, 627
TaiI ACGT 1 cut(s) 278
TaqI TCGA 2 cut(s) 256, 691
TasI AATT 3 cut(s) 374, 512, 696
TatI WGTACW 1 cut(s) 326
Tru1I TTAA 1 cut(s) 700
Tru9I TTAA 1 cut(s) 700
TscAI CASTG 2 cut(s) 356, 393
TseI GCWGC 2 cut(s) 138, 319
TspDTI ATGAA 2 cut(s) 408, 630
TspGWI ACGGA 2 cut(s) 102, 296
TspRI CASTG 2 cut(s) 356, 393
Van91I CCANNNNNTGG 1 cut(s) 38
VpaK11BI GGWCC 2 cut(s) 128, 224
XapI RAATTY 1 cut(s) 374
XceI RCATGY 1 cut(s) 372
XcmI CCANNNNNNNNNTGG 1 cut(s) 356
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.