AT3G01520

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014139
Physical Location & Seq
Forward (+)
208250 .. 210161
1912 bp
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UTR
Exon/CDS
Intron
AT3G01520.1

Sequence Viewer

Length: 528 bp
ATGGGGAGCGAGCCAACAAAAGTGATGGTGGCGGTGAACGCTTCGACGATCAAAGACTATCCTAACCCTTCGATTAGCTGCAAAAGAGCATTCGAATGGACTCTGGAGAAGATCGTAAGGTCCAACACTTCCGATTTCAAGATTCTCTTGCTCCACGTACAAGTCGTCGACGAAGACGGTTTTGATGACGTGGATAGCATTTATGCTTCCCCTGAGGATTTCCGAGACATGAGACAATCTAACAAGGCAAAAGGTCTTCACCTTCTCGAGTTTTTCGTTAATAAATGTCATGAGATTGGGGTTGGTTGCGAGGCCTGGATTAAGACAGGTGATCCCAAGGATGTCATATGCCAAGAAGTGAAGCGAGTTCGACCAGATTTTCTGGTCGTGGGAAGTCGTGGACTTGGCCGGTTTCAAAAGGTCTTTGTGGGGACTGTGAGTGCGTTCTGTGTGAAACATGCGGAGTGTCCAGTTATGACGATCAAACGCAATGCCGATGAAACTCCCAGTGATCCAGCTGATGACTAA

Protein Analysis

175

Amino Acids

19.57

Weight (kDa)

5.61

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 23 - 162 3e-19 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01520 AT5G14680
fragaria_vesca FvH4_6g50880
malus_domestica MD09G1031200.v1.1 MD17G1033100.v1.1
prunus_persica Prupe.3G286400_v2.0.a1
pyrus_communis pycom17g03050
rosa_chinensis RchiOBHm_Chr2g0172261
rosa_laevigata RLG00000022099
rosa_multiflora Rmu_ssc0000103.1_g000006
rosa_roxburghii Rroxscaffold_2G00080020
rosa_rugosa Rorug02G0558200
rosa_samantha Rh2AG633200 Rh2BG646800 Rh2CG613800 Rh2DG661700
rosa_wichuraiana Rw2G052430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 168
AciI CCGC 2 cut(s) 32, 461
AclWI GGATC 2 cut(s) 326, 506
AcoI YGGCCR 1 cut(s) 406
AfaI GTAC 1 cut(s) 159
AgsI TTSAA 2 cut(s) 139, 416
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 2 cut(s) 78, 518
AluI AGCT 2 cut(s) 78, 518
Alw26I GTCTC 2 cut(s) 219, 226
AlwI GGATC 2 cut(s) 326, 506
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 2 cut(s) 312, 406
ApeKI GCWGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 46, 251, 341
AsuII TTCGAA 1 cut(s) 93
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 120
AxyI CCTNAGG 1 cut(s) 213
BbsI GAAGAC 2 cut(s) 180, 248
BbvI GCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 19
BciT130I CCWGG 1 cut(s) 316
BcoDI GTCTC 2 cut(s) 219, 226
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 266
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 316
BmrI ACTGGG 1 cut(s) 501
BmuI ACTGGG 1 cut(s) 501
BpiI GAAGAC 2 cut(s) 180, 248
BpmI CTGGAG 1 cut(s) 125
Bpu14I TTCGAA 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 336
Bse118I RCCGGY 1 cut(s) 408
Bse1I ACTGG 2 cut(s) 470, 507
Bse21I CCTNAGG 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 496
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 346
BseMI GCAATG 1 cut(s) 496
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 470, 507
BseXI GCAGC 1 cut(s) 65
BshFI GGCC 2 cut(s) 314, 408
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 1 cut(s) 409
BslFI GGGAC 1 cut(s) 445
BsmAI GTCTC 2 cut(s) 219, 226
BsmFI GGGAC 1 cut(s) 445
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 2 cut(s) 314, 408
BsoBI CYCGRG 1 cut(s) 266
Bsp119I TTCGAA 1 cut(s) 93
Bsp143I GATC 5 cut(s) 48, 111, 331, 480, 511
BspACI CCGC 2 cut(s) 32, 461
BspANI GGCC 2 cut(s) 314, 408
BspCNI CTCAG 1 cut(s) 205
BspHI TCATGA 1 cut(s) 289
BspPI GGATC 2 cut(s) 326, 506
BspT104I TTCGAA 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 496
BsrFI RCCGGY 1 cut(s) 408
BsrI ACTGG 2 cut(s) 470, 507
BssAI RCCGGY 1 cut(s) 408
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 5 cut(s) 48, 111, 331, 480, 511
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 179, 436
BstBAI YACGTR 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 5 cut(s) 51, 114, 334, 483, 514
BstMAI GTCTC 2 cut(s) 219, 226
BstMBI GATC 5 cut(s) 48, 111, 331, 480, 511
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 316
BstNSI RCATGY 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 2 cut(s) 180, 248
Bsu36I CCTNAGG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 314, 408
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 514
Cac8I GCNNGC 1 cut(s) 11
CciI TCATGA 1 cut(s) 289
Cfr10I RCCGGY 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 158
CviAII CATG 3 cut(s) 229, 290, 458
CviJI RGCY 5 cut(s) 13, 78, 314, 408, 518
CviKI_1 RGCY 5 cut(s) 13, 78, 314, 408, 518
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 1 cut(s) 213
DpnI GATC 5 cut(s) 50, 113, 333, 482, 513
DpnII GATC 5 cut(s) 48, 111, 331, 480, 511
EaeI YGGCCR 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 336
Eco147I AGGCCT 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 120
Eco81I CCTNAGG 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 3 cut(s) 232, 293, 461
FaiI YATR 7 cut(s) 204, 230, 291, 347, 349, 459, 476
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 445
FatI CATG 3 cut(s) 228, 289, 457
FauNDI CATATG 1 cut(s) 347
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 2 cut(s) 314, 408
HapII CCGG 1 cut(s) 409
Hin1II CATG 3 cut(s) 232, 293, 461
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 2 cut(s) 100, 142
HpaII CCGG 1 cut(s) 409
HphI GGTGA 3 cut(s) 46, 251, 341
Hpy166II GTNNAC 3 cut(s) 37, 169, 401
Hpy188I TCNGA 2 cut(s) 133, 224
Hpy188III TCNNGA 4 cut(s) 104, 139, 266, 290
Hpy8I GTNNAC 3 cut(s) 37, 169, 401
Hpy99I CGWCG 3 cut(s) 49, 170, 173
HpyAV CCTTC 2 cut(s) 78, 272
HpyCH4III ACNGT 2 cut(s) 179, 436
HpyCH4IV ACGT 2 cut(s) 156, 189
HpyCH4V TGCA 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 2 cut(s) 156, 189
Hsp92II CATG 3 cut(s) 232, 293, 461
Kzo9I GATC 5 cut(s) 48, 111, 331, 480, 511
LmnI GCTCC 2 cut(s) 6, 156
Lsp1109I GCAGC 1 cut(s) 65
MaeII ACGT 2 cut(s) 156, 189
MalI GATC 5 cut(s) 50, 113, 333, 482, 513
MboI GATC 5 cut(s) 48, 111, 331, 480, 511
MboII GAAGA 3 cut(s) 121, 185, 248
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 2 cut(s) 208, 304
MseI TTAA 2 cut(s) 279, 321
MslI CAYNNNNRTG 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 1 cut(s) 316
Mva1269I GAATGC 1 cut(s) 89
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeI CATATG 1 cut(s) 347
NdeII GATC 5 cut(s) 48, 111, 331, 480, 511
NlaIII CATG 3 cut(s) 232, 293, 461
NspI RCATGY 1 cut(s) 461
NspV TTCGAA 1 cut(s) 93
PaeR7I CTCGAG 1 cut(s) 266
PagI TCATGA 1 cut(s) 289
PceI AGGCCT 1 cut(s) 314
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 273
PctI GAATGC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 80
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Ppu21I YACGTR 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspPI GGNCC 1 cut(s) 120
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 94
SalI GTCGAC 1 cut(s) 167
SaqAI TTAA 2 cut(s) 279, 321
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 5 cut(s) 48, 111, 331, 480, 511
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 316
SetI ASST 9 cut(s) 80, 122, 159, 192, 256, 264, 331, 423, 520
Sfr274I CTCGAG 1 cut(s) 266
SfuI TTCGAA 1 cut(s) 93
SgrDI CGTCGACG 1 cut(s) 167
SinI GGWCC 1 cut(s) 120
SlaI CTCGAG 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SseBI AGGCCT 1 cut(s) 314
SsiI CCGC 2 cut(s) 32, 461
StuI AGGCCT 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 314
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 2 cut(s) 179, 436
TaiI ACGT 2 cut(s) 159, 192
TaqI TCGA 6 cut(s) 44, 71, 93, 168, 267, 370
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 2 cut(s) 279, 321
Tru9I TTAA 2 cut(s) 279, 321
TscAI CASTG 1 cut(s) 514
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 513
TspRI CASTG 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 120
XceI RCATGY 1 cut(s) 461
XhoI CTCGAG 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.