MD09G1031200.v1.1

Universal stress protein A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0014139
Physical Location & Seq
Reverse (-)
1889687 .. 1891899
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1031200.v1.1.491

Sequence Viewer

Length: 528 bp
ATGGCGAATGAGCCAACTCGGATAATGCTGGGAGTGAACGAGTCGACCATCAAGGGCTACCCGCACCCCTCGATCAGCAGCAGGAAGGCGTTCGAGTGGACGCTCCAGAAGATCGTGCGCTCCAACACCAGTGGCTTCAAGCTCCAGTTCCTTCACGTTCAAGTCCCCGACGAAGACGGTTTTGACGACATGGACAGTGTGTATGCATCGCCGGAGGATTTTAAAAACTTGAAGAACAGAGACCGAGCTCGAGGGCTTCATCTGCTGGAGTTCTTTGTTGACAGATGTCATGCAATCGGGGTTGCTTGTGAAGCATGGATCAAAAGAGGGGATGCCAAGGAAGTAATCTGCCGCGAGGTGAAGCGTGTGCAGCCAGACCTTCTGGTGGTGGGCTGTCGGGGTCTTGGTCCTTTCCAGAGGGTTTTTGTTGGGACCGTGAGCGAGTTTTGCGTGAAGCATGCTGAGTGTCCGGTCATCACAATCAAGCGCAGTGCAGAGGAAACACCCCAGGATCCTGTCGATGACTGA

Protein Analysis

176

Amino Acids

19.78

Weight (kDa)

6.22

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 24 - 162 3.2e-19 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01520 AT5G14680
fragaria_vesca FvH4_6g50880
malus_domestica MD09G1031200.v1.1 MD17G1033100.v1.1
prunus_persica Prupe.3G286400_v2.0.a1
pyrus_communis pycom17g03050
rosa_chinensis RchiOBHm_Chr2g0172261
rosa_laevigata RLG00000022099
rosa_multiflora Rmu_ssc0000103.1_g000006
rosa_roxburghii Rroxscaffold_2G00080020
rosa_rugosa Rorug02G0558200
rosa_samantha Rh2AG633200 Rh2BG646800 Rh2CG613800 Rh2DG661700
rosa_wichuraiana Rw2G052430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 44
AccII CGCG 1 cut(s) 354
AciI CCGC 2 cut(s) 62, 352
AclWI GGATC 3 cut(s) 326, 506, 519
AfiI CCNNNNNNNGG 1 cut(s) 385
AgsI TTSAA 3 cut(s) 139, 161, 232
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 2 cut(s) 142, 248
AluI AGCT 2 cut(s) 142, 248
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 3 cut(s) 326, 506, 519
Ama87I CYCGRG 1 cut(s) 249
ApeKI GCWGC 2 cut(s) 78, 370
Asp700I GAANNNNTTC 1 cut(s) 89
AspLEI GCGC 2 cut(s) 120, 489
AspS9I GGNCC 2 cut(s) 407, 432
AsuHPI GGTGA 1 cut(s) 370
AvaI CYCGRG 1 cut(s) 249
AvaII GGWCC 2 cut(s) 407, 432
BamHI GGATCC 1 cut(s) 511
BanII GRGCYC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 90, 382
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 509
BcoDI GTCTC 1 cut(s) 234
BisI GCNGC 3 cut(s) 79, 352, 371
BlsI GCNGC 3 cut(s) 80, 353, 372
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 2 cut(s) 407, 432
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 2 cut(s) 407, 432
BmiI GGNNCC 2 cut(s) 433, 513
BmrFI CCNGG 1 cut(s) 509
BmsI GCATC 2 cut(s) 215, 322
BoxI GACNNNNGTC 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 180
BpmI CTGGAG 3 cut(s) 89, 128, 287
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 336, 507
BsaWI WCCGGW 1 cut(s) 469
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse1I ACTGG 2 cut(s) 129, 145
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 2 cut(s) 336, 507
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 2 cut(s) 129, 145
BseXI GCAGC 2 cut(s) 90, 382
BseYI CCCAGC 1 cut(s) 28
BsgI GTGCAG 2 cut(s) 389, 513
Bsh1236I CGCG 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 2 cut(s) 212, 470
BslFI GGGAC 2 cut(s) 149, 445
BslI CCNNNNNNNGG 1 cut(s) 385
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 2 cut(s) 149, 445
Bso31I GGTCTC 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 4 cut(s) 72, 111, 318, 511
BspACI CCGC 2 cut(s) 62, 352
BspCNI CTCAG 1 cut(s) 454
BspFNI CGCG 1 cut(s) 354
BspLI GGNNCC 2 cut(s) 433, 513
BspPI GGATC 3 cut(s) 326, 506, 519
BspTNI GGTCTC 1 cut(s) 234
BsrI ACTGG 2 cut(s) 129, 145
BssECI CCNNGG 2 cut(s) 336, 507
BssMI GATC 4 cut(s) 72, 111, 318, 511
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 3 cut(s) 179, 197, 436
BstC8I GCNNGC 1 cut(s) 459
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 1 cut(s) 337
BstFNI CGCG 1 cut(s) 354
BstHHI GCGC 2 cut(s) 120, 489
BstKTI GATC 4 cut(s) 75, 114, 321, 514
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 4 cut(s) 72, 111, 318, 511
BstMWI GCNNNNNNNGC 4 cut(s) 262, 311, 370, 447
BstNI CCWGG 1 cut(s) 509
BstNSI RCATGY 1 cut(s) 461
BstPAI GACNNNNGTC 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 507
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 90, 382
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 337
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 3 cut(s) 136, 202, 496
Cac8I GCNNGC 1 cut(s) 459
CfoI GCGC 2 cut(s) 120, 489
Cfr13I GGNCC 2 cut(s) 407, 432
CseI GACGC 1 cut(s) 109
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 4 cut(s) 190, 290, 315, 458
CviJI RGCY 8 cut(s) 13, 57, 135, 142, 248, 256, 373, 393
CviKI_1 RGCY 8 cut(s) 13, 57, 135, 142, 248, 256, 373, 393
DdeI CTNAG 1 cut(s) 462
DpnI GATC 4 cut(s) 74, 113, 320, 513
DpnII GATC 4 cut(s) 72, 111, 318, 511
DraI TTTAAA 1 cut(s) 223
Ecl136II GAGCTC 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 234
Eco47I GGWCC 2 cut(s) 407, 432
Eco53kI GAGCTC 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 4 cut(s) 193, 293, 318, 461
FaiI YATR 5 cut(s) 191, 204, 291, 316, 459
FaqI GGGAC 2 cut(s) 149, 445
FatI CATG 4 cut(s) 189, 289, 314, 457
FauI CCCGC 1 cut(s) 69
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 3 cut(s) 79, 352, 371
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 3 cut(s) 79, 352, 371
GlaI GCGC 2 cut(s) 119, 488
GluI GCNGC 3 cut(s) 79, 352, 371
GsaI CCCAGC 1 cut(s) 32
GsuI CTGGAG 3 cut(s) 89, 128, 287
HapII CCGG 2 cut(s) 212, 470
HgaI GACGC 1 cut(s) 109
HhaI GCGC 2 cut(s) 120, 489
Hin1II CATG 4 cut(s) 193, 293, 318, 461
Hin6I GCGC 2 cut(s) 118, 487
HinP1I GCGC 2 cut(s) 118, 487
HincII GTYRAC 2 cut(s) 45, 280
HindII GTYRAC 2 cut(s) 45, 280
HinfI GANTC 1 cut(s) 41
HpaII CCGG 2 cut(s) 212, 470
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 4 cut(s) 37, 45, 99, 280
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 106, 415
Hpy8I GTNNAC 4 cut(s) 37, 45, 99, 280
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 3 cut(s) 79, 161, 389
HpyCH4III ACNGT 3 cut(s) 179, 197, 436
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 4 cut(s) 206, 293, 370, 494
HpyF10VI GCNNNNNNNGC 4 cut(s) 262, 311, 370, 447
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 4 cut(s) 193, 293, 318, 461
HspAI GCGC 2 cut(s) 118, 487
Kzo9I GATC 4 cut(s) 72, 111, 318, 511
LmnI GCTCC 3 cut(s) 108, 125, 147
Lsp1109I GCAGC 2 cut(s) 90, 382
LweI GCATC 2 cut(s) 215, 322
MaeII ACGT 1 cut(s) 156
MalI GATC 4 cut(s) 74, 113, 320, 513
MboI GATC 4 cut(s) 72, 111, 318, 511
MboII GAAGA 3 cut(s) 121, 185, 244
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 1 cut(s) 250
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 7 cut(s) 79, 208, 245, 320, 349, 411, 490
Mph1103I ATGCAT 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 89
MseI TTAA 1 cut(s) 222
MspI CCGG 2 cut(s) 212, 470
MspR9I CCNGG 1 cut(s) 509
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 4 cut(s) 262, 311, 370, 447
NdeII GATC 4 cut(s) 72, 111, 318, 511
NlaIII CATG 4 cut(s) 193, 293, 318, 461
NlaIV GGNNCC 2 cut(s) 433, 513
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 1 cut(s) 461
PaeI GCATGC 1 cut(s) 461
PaeR7I CTCGAG 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 89
PkrI GCNGC 3 cut(s) 80, 353, 372
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PshAI GACNNNNGTC 1 cut(s) 285
Psp124BI GAGCTC 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 507
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 2 cut(s) 433, 513
PspPI GGNCC 2 cut(s) 407, 432
PspXI VCTCGAGB 1 cut(s) 249
PsuI RGATCY 1 cut(s) 511
SacI GAGCTC 1 cut(s) 250
SalI GTCGAC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 3 cut(s) 79, 352, 371
Sau3AI GATC 4 cut(s) 72, 111, 318, 511
Sau96I GGNCC 2 cut(s) 407, 432
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 1 cut(s) 250
SetI ASST 5 cut(s) 144, 159, 250, 360, 381
SfaNI GCATC 2 cut(s) 215, 322
Sfr274I CTCGAG 1 cut(s) 249
SinI GGWCC 2 cut(s) 407, 432
SlaI CTCGAG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 249
SmoI CTYRAG 1 cut(s) 249
SphI GCATGC 1 cut(s) 461
SsiI CCGC 2 cut(s) 62, 352
SstI GAGCTC 1 cut(s) 250
StyD4I CCNGG 1 cut(s) 507
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 3 cut(s) 179, 197, 436
TaiI ACGT 1 cut(s) 159
TaqI TCGA 5 cut(s) 44, 71, 93, 250, 519
TaqII GACCGA 1 cut(s) 258
TauI GCSGC 1 cut(s) 354
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 3 cut(s) 136, 202, 496
TseI GCWGC 2 cut(s) 78, 370
TspDTI ATGAA 1 cut(s) 248
TspRI CASTG 3 cut(s) 136, 202, 496
VpaK11BI GGWCC 2 cut(s) 407, 432
XceI RCATGY 1 cut(s) 461
XhoI CTCGAG 1 cut(s) 249
XmiI GTMKAC 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 89
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.