FvH4_6g50880

Universal stress protein A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014139
Physical Location & Seq
Forward (+)
37806988 .. 37808689
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50880.t1

Sequence Viewer

Length: 531 bp
ATGGCGGGTGCGGCACCGACTCGGGTACTGATGGGAGTGAACGAGTCGACGATCAATGGTTACCCGCACGCCTCCATAAGCTCCCGCAAAGCCTTCGAGTGGACTCTCGACAAGATCGTCCGCTCCAACACCTCCGGCTTCAAGCTTTTCTTCCTCCATGTCCAAGTTCCTGACGAAGACGGTTTTGACGACATGGATAGCATCTATGCATCACCGGAGGATTTTAAAAGCTTGAAGCGTAGAGACCAGGCAAGAGGGGCTCATCTGCTGGAGTTCTTTGTTGAGAGATGTCATGCAATTGGGGTTGCTTGTGAAGCATGGATCAAAAGAGGTGATCCCAAGGAAGTAATCTGCCATGAGGTGAAGCGCTTGCAGCCAGATCTTCTGGTTGTTGGCTGCCGTGGTCTTGGTCCTTTCCAGAGGGTTTTCGTGGGGACTGTGAGTGAATTTTGCGTGAAGCATGCTGAATGCCCTGTCATCACAATCAAGCGCAGTGCTGAAGAGACACCCCAGGATCCTGTTGATGACTGA

Protein Analysis

177

Amino Acids

19.68

Weight (kDa)

5.87

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 25 - 163 7.3e-21 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01520 AT5G14680
fragaria_vesca FvH4_6g50880
malus_domestica MD09G1031200.v1.1 MD17G1033100.v1.1
prunus_persica Prupe.3G286400_v2.0.a1
pyrus_communis pycom17g03050
rosa_chinensis RchiOBHm_Chr2g0172261
rosa_laevigata RLG00000022099
rosa_multiflora Rmu_ssc0000103.1_g000006
rosa_roxburghii Rroxscaffold_2G00080020
rosa_rugosa Rorug02G0558200
rosa_samantha Rh2AG633200 Rh2BG646800 Rh2CG613800 Rh2DG661700
rosa_wichuraiana Rw2G052430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 13
AccBSI CCGCTC 1 cut(s) 123
AccI GTMKAC 1 cut(s) 47
AciI CCGC 5 cut(s) 5, 11, 65, 85, 121
AclWI GGATC 4 cut(s) 329, 329, 509, 522
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 519
AfaI GTAC 1 cut(s) 27
AfeI AGCGCT 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 99
AgsI TTSAA 2 cut(s) 142, 235
AjnI CCWGG 2 cut(s) 246, 510
AluBI AGCT 3 cut(s) 81, 145, 231
AluI AGCT 3 cut(s) 81, 145, 231
Alw26I GTCTC 2 cut(s) 237, 497
AlwI GGATC 4 cut(s) 329, 329, 509, 522
Ama87I CYCGRG 1 cut(s) 21
Aor51HI AGCGCT 1 cut(s) 368
ApeKI GCWGC 2 cut(s) 373, 396
ApoI RAATTY 1 cut(s) 446
AspLEI GCGC 2 cut(s) 369, 492
AspS9I GGNCC 1 cut(s) 410
AsuHPI GGTGA 3 cut(s) 204, 344, 373
AvaI CYCGRG 1 cut(s) 21
AvaII GGWCC 1 cut(s) 410
BamHI GGATCC 1 cut(s) 514
BanI GGYRCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 383, 385
BccI CCATC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 384
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BciT130I CCWGG 2 cut(s) 248, 512
BcoDI GTCTC 2 cut(s) 237, 497
BfoI RGCGCY 1 cut(s) 370
BglII AGATCT 1 cut(s) 379
BisI GCNGC 3 cut(s) 12, 374, 397
BlsI GCNGC 3 cut(s) 13, 375, 398
Bme1390I CCNGG 2 cut(s) 248, 512
Bme18I GGWCC 1 cut(s) 410
BmeT110I CYCGRG 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 2 cut(s) 15, 516
BmrFI CCNGG 2 cut(s) 248, 512
BmsI GCATC 2 cut(s) 210, 218
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 339, 400, 510
BsaWI WCCGGW 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 99
BseBI CCWGG 2 cut(s) 248, 512
BseDI CCNNGG 3 cut(s) 339, 400, 510
BseLI CCNNNNNNNGG 1 cut(s) 99
BseXI GCAGC 2 cut(s) 383, 385
BshNI GGYRCC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 21
BsiSI CCGG 2 cut(s) 135, 215
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 2 cut(s) 237, 497
BsmFI GGGAC 1 cut(s) 448
BsmI GAATGC 1 cut(s) 473
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 6 cut(s) 51, 114, 321, 334, 379, 514
BspACI CCGC 5 cut(s) 5, 11, 65, 85, 121
BspLI GGNNCC 2 cut(s) 15, 516
BspPI GGATC 4 cut(s) 329, 329, 509, 522
BspT107I GGYRCC 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 237
BsrBI CCGCTC 1 cut(s) 123
BssECI CCNNGG 3 cut(s) 339, 400, 510
BssMI GATC 6 cut(s) 51, 114, 321, 334, 379, 514
BssT1I CCWWGG 1 cut(s) 339
Bst2UI CCWGG 2 cut(s) 248, 512
Bst4CI ACNGT 2 cut(s) 182, 439
Bst6I CTCTTC 1 cut(s) 495
BstC8I GCNNGC 3 cut(s) 69, 371, 462
BstDSI CCRYGG 1 cut(s) 400
BstEII GGTNACC 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 2 cut(s) 369, 492
BstKTI GATC 6 cut(s) 54, 117, 324, 337, 382, 517
BstMAI GTCTC 2 cut(s) 237, 497
BstMBI GATC 6 cut(s) 51, 114, 321, 334, 379, 514
BstMWI GCNNNNNNNGC 4 cut(s) 11, 257, 314, 373
BstNI CCWGG 2 cut(s) 248, 512
BstNSI RCATGY 1 cut(s) 464
BstPI GGTNACC 1 cut(s) 59
BstSCI CCNGG 2 cut(s) 246, 510
BstV1I GCAGC 2 cut(s) 383, 385
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 379, 514
BstYI RGATCY 2 cut(s) 379, 514
BtgI CCRYGG 1 cut(s) 400
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 1 cut(s) 499
Cac8I GCNNGC 3 cut(s) 69, 371, 462
CfoI GCGC 2 cut(s) 369, 492
Cfr13I GGNCC 1 cut(s) 410
Csp6I GTAC 1 cut(s) 26
CviAII CATG 6 cut(s) 158, 193, 293, 318, 356, 461
CviJI RGCY 8 cut(s) 81, 92, 138, 145, 231, 260, 376, 396
CviKI_1 RGCY 8 cut(s) 81, 92, 138, 145, 231, 260, 376, 396
CviQI GTAC 1 cut(s) 26
DpnI GATC 6 cut(s) 53, 116, 323, 336, 381, 516
DpnII GATC 6 cut(s) 51, 114, 321, 334, 379, 514
DraI TTTAAA 1 cut(s) 226
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 410
Eco47III AGCGCT 1 cut(s) 368
Eco57I CTGAAG 1 cut(s) 519
Eco88I CYCGRG 1 cut(s) 21
Eco91I GGTNACC 1 cut(s) 59
EcoO65I GGTNACC 1 cut(s) 59
EcoRII CCWGG 2 cut(s) 246, 510
EcoT14I CCWWGG 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 6 cut(s) 161, 196, 296, 321, 359, 464
FaiI YATR 8 cut(s) 77, 159, 194, 207, 294, 319, 357, 462
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 448
FatI CATG 6 cut(s) 157, 192, 292, 317, 355, 460
FauI CCCGC 2 cut(s) 72, 92
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 3 cut(s) 12, 374, 397
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 3 cut(s) 12, 374, 397
GlaI GCGC 2 cut(s) 368, 491
GluI GCNGC 3 cut(s) 12, 374, 397
GsuI CTGGAG 1 cut(s) 290
HaeII RGCGCY 1 cut(s) 370
HapII CCGG 2 cut(s) 135, 215
HhaI GCGC 2 cut(s) 369, 492
Hin1II CATG 6 cut(s) 161, 196, 296, 321, 359, 464
Hin6I GCGC 2 cut(s) 367, 490
HinP1I GCGC 2 cut(s) 367, 490
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HindIII AAGCTT 2 cut(s) 143, 229
HinfI GANTC 3 cut(s) 19, 44, 103
HpaII CCGG 2 cut(s) 135, 215
HphI GGTGA 3 cut(s) 204, 344, 373
Hpy166II GTNNAC 3 cut(s) 40, 48, 102
Hpy188III TCNNGA 3 cut(s) 107, 170, 418
Hpy8I GTNNAC 3 cut(s) 40, 48, 102
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 182, 439
HpyCH4V TGCA 3 cut(s) 209, 296, 373
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 257, 314, 373
Hsp92II CATG 6 cut(s) 161, 196, 296, 321, 359, 464
HspAI GCGC 2 cut(s) 367, 490
Kzo9I GATC 6 cut(s) 51, 114, 321, 334, 379, 514
LmnI GCTCC 2 cut(s) 86, 128
Lsp1109I GCAGC 2 cut(s) 383, 385
LweI GCATC 2 cut(s) 210, 218
MaeIII GTNAC 1 cut(s) 59
MalI GATC 6 cut(s) 53, 116, 323, 336, 381, 516
MbiI CCGCTC 1 cut(s) 123
MboI GATC 6 cut(s) 51, 114, 321, 334, 379, 514
MboII GAAGA 4 cut(s) 142, 188, 374, 512
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 2 cut(s) 379, 514
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 2 cut(s) 297, 446
MlyI GAGTC 3 cut(s) 13, 53, 97
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 8 cut(s) 82, 142, 164, 211, 248, 323, 352, 414
Mph1103I ATGCAT 1 cut(s) 211
MseI TTAA 1 cut(s) 225
MspI CCGG 2 cut(s) 135, 215
MspR9I CCNGG 2 cut(s) 248, 512
MunI CAATTG 1 cut(s) 297
Mva1269I GAATGC 1 cut(s) 473
MvaI CCWGG 2 cut(s) 248, 512
MwoI GCNNNNNNNGC 4 cut(s) 11, 257, 314, 373
NdeII GATC 6 cut(s) 51, 114, 321, 334, 379, 514
NlaIII CATG 6 cut(s) 161, 196, 296, 321, 359, 464
NlaIV GGNNCC 2 cut(s) 15, 516
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 1 cut(s) 464
PaeI GCATGC 1 cut(s) 464
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 186
PctI GAATGC 1 cut(s) 473
PkrI GCNGC 3 cut(s) 13, 375, 398
PleI GAGTC 3 cut(s) 13, 52, 97
PpsI GAGTC 3 cut(s) 13, 52, 97
Psp6I CCWGG 2 cut(s) 246, 510
PspEI GGTNACC 1 cut(s) 59
PspGI CCWGG 2 cut(s) 246, 510
PspN4I GGNNCC 2 cut(s) 15, 516
PspPI GGNCC 1 cut(s) 410
PsuI RGATCY 2 cut(s) 379, 514
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SalI GTCGAC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 3 cut(s) 12, 374, 397
Sau3AI GATC 6 cut(s) 51, 114, 321, 334, 379, 514
Sau96I GGNCC 1 cut(s) 410
SchI GAGTC 3 cut(s) 13, 53, 97
ScrFI CCNGG 2 cut(s) 248, 512
SduI GDGCHC 1 cut(s) 262
SetI ASST 6 cut(s) 83, 134, 147, 233, 334, 363
SfaNI GCATC 2 cut(s) 210, 218
SinI GGWCC 1 cut(s) 410
SphI GCATGC 1 cut(s) 464
Sse9I AATT 2 cut(s) 297, 446
SsiI CCGC 5 cut(s) 5, 11, 65, 85, 121
StyD4I CCNGG 2 cut(s) 246, 510
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 2 cut(s) 182, 439
TaqI TCGA 3 cut(s) 47, 96, 108
TasI AATT 2 cut(s) 297, 446
TauI GCSGC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 499
TseI GCWGC 2 cut(s) 373, 396
TspRI CASTG 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 1 cut(s) 446
XceI RCATGY 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 47
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.