Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000103.1

Orthogroup ID

OG0014139

Physical Location & Seq

Genomic Coordinates Reverse (-)

21330 .. 21899

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000103.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atggacagtatctatgcgtcaccagaggattttaaaagcttgaagcgtagagaccaggcaagaggggctcatctgctggagttctttgttgagagatgtcatgcaattggggttgcttgtgaagcatggatcaagaaaggtgatccaaaggaagtaatctgccatgaggtgaaacgattgcagccagatcttctagttgttggctgccgcggtcttggtcctttccagagggtttttgtggggactgtgagtgaattttgcgtcaagcatgccgaatgccctgtcatcacaatcaagcgcagtgccgaagagacacctgaggatccagtcgatgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

112

Amino Acids

12.6

Weight (kDa)

5.8

Isoelectric Point (pI)

58.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01520 AT5G14680
fragaria_vesca	FvH4_6g50880
malus_domestica	MD09G1031200.v1.1 MD17G1033100.v1.1
prunus_persica	Prupe.3G286400_v2.0.a1
pyrus_communis	pycom17g03050
rosa_chinensis	RchiOBHm_Chr2g0172261
rosa_laevigata	RLG00000022099
rosa_multiflora	Rmu_ssc0000103.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080020
rosa_rugosa	Rorug02G0558200
rosa_samantha	Rh2AG633200 Rh2BG646800 Rh2CG613800 Rh2DG661700
rosa_wichuraiana	Rw2G052430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	210
AciI	CCGC	2 cut(s)	208, 210
AclWI	GGATC	4 cut(s)	137, 137, 317, 330
AcsI	RAATTY	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
Alw26I	GTCTC	2 cut(s)	45, 305
AlwI	GGATC	4 cut(s)	137, 137, 317, 330
ApeKI	GCWGC	2 cut(s)	181, 204
ApoI	RAATTY	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	267, 299
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	3 cut(s)	12, 152, 181
AvaII	GGWCC	1 cut(s)	218
AxyI	CCTNAGG	1 cut(s)	318
BamHI	GGATCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	191, 193
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	45, 305
BfaI	CTAG	1 cut(s)	194
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	3 cut(s)	182, 205, 208
BlsI	GCNGC	3 cut(s)	183, 206, 209
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	191, 193
Bsh1236I	CGCG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	256
BsmAI	GTCTC	2 cut(s)	45, 305
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	129, 142, 187, 322
BspACI	CCGC	2 cut(s)	208, 210
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	4 cut(s)	137, 137, 317, 330
BspTNI	GGTCTC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	4 cut(s)	129, 142, 187, 322
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	8, 247
Bst6I	CTCTTC	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	4 cut(s)	132, 145, 190, 325
BstMAI	GTCTC	2 cut(s)	45, 305
BstMBI	GATC	4 cut(s)	129, 142, 187, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 122
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	54
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	191, 193
BstX2I	RGATCY	2 cut(s)	187, 322
BstYI	RGATCY	2 cut(s)	187, 322
Bsu36I	CCTNAGG	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	218
Cfr42I	CCGCGG	1 cut(s)	211
CseI	GACGC	2 cut(s)	6, 250
CviAII	CATG	4 cut(s)	101, 126, 164, 269
CviJI	RGCY	4 cut(s)	39, 68, 184, 204
CviKI_1	RGCY	4 cut(s)	39, 68, 184, 204
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	4 cut(s)	131, 144, 189, 324
DpnII	GATC	4 cut(s)	129, 142, 187, 322
DraI	TTTAAA	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	218
Eco81I	CCTNAGG	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	70
FaeI	CATG	4 cut(s)	104, 129, 167, 272
FaiI	YATR	5 cut(s)	15, 102, 127, 165, 270
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	4 cut(s)	100, 125, 163, 268
Fnu4HI	GCNGC	3 cut(s)	182, 205, 208
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	3 cut(s)	182, 205, 208
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	3 cut(s)	182, 205, 208
GsuI	CTGGAG	1 cut(s)	98
HgaI	GACGC	2 cut(s)	6, 250
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	4 cut(s)	104, 129, 167, 272
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	37
HphI	GGTGA	3 cut(s)	12, 152, 181
Hpy188III	TCNNGA	2 cut(s)	133, 226
HpyCH4III	ACNGT	2 cut(s)	8, 247
HpyCH4V	TGCA	2 cut(s)	104, 181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 122
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	4 cut(s)	104, 129, 167, 272
HspAI	GCGC	1 cut(s)	298
KspI	CCGCGG	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	129, 142, 187, 322
LpnPI	CCDG	8 cut(s)	36, 41, 62, 68, 198, 239, 294, 330
Lsp1109I	GCAGC	2 cut(s)	191, 193
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	4 cut(s)	131, 144, 189, 324
MboI	GATC	4 cut(s)	129, 142, 187, 322
MboII	GAAGA	2 cut(s)	182, 320
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	2 cut(s)	187, 322
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	105, 254
MnlI	CCTC	5 cut(s)	19, 56, 160, 222, 313
MseI	TTAA	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	65, 122
NdeII	GATC	4 cut(s)	129, 142, 187, 322
NlaIII	CATG	4 cut(s)	104, 129, 167, 272
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	18
NspI	RCATGY	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	272
PctI	GAATGC	1 cut(s)	281
PkrI	GCNGC	3 cut(s)	183, 206, 209
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	187, 322
SacII	CCGCGG	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	3 cut(s)	182, 205, 208
Sau3AI	GATC	4 cut(s)	129, 142, 187, 322
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	4 cut(s)	41, 142, 171, 319
Sfr303I	CCGCGG	1 cut(s)	211
SgrBI	CCGCGG	1 cut(s)	211
SinI	GGWCC	1 cut(s)	218
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	2 cut(s)	105, 254
SsiI	CCGC	2 cut(s)	208, 210
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	8, 247
TaqI	TCGA	1 cut(s)	330
TasI	AATT	2 cut(s)	105, 254
TauI	GCSGC	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	18
TseI	GCWGC	2 cut(s)	181, 204
Tsp45I	GTSAC	1 cut(s)	18
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	1 cut(s)	272
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.