Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014139

Physical Location & Seq

Genomic Coordinates Forward (+)

25888524 .. 25890818

Gene Structure 2295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G286400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGGGGTGAGCCAACTCGGATAATGCTGGCAGTGAACGAGTCGACGATCAAGGGGTACCCGCACGCCTCCATAAGCAGCAGAAAGGCCTTCGAGTGGACTCTGCATAAGATCGTCCGCTCCAACACCTCTGGCTTCAAGCTCCTCTTCCTTCATGTCCAAGTCCCTGACGAAGACGGTTTTGATGACATGGATAGTGTCTATGCATCACCTGAGGATTTCAAAAATCTGAGGAATAGAGACCGCGCCAAAGGGCTTCATCTGCTGGAGTTTTTTGTTGAAAGATGTCATGCAATTGGGGTTGGTTGTGAAGCATGGATAAAAAAAGGGGATCCCAAGGAAGTAATCTGTCATGAGGTGAAGCGTGTGCAGCCTGACTTTCTGGTTGTGGGCTGCCGGGGTCTTGGTCCTTTCCAGAGGGTTTTTGTTGGGACAGTGAGTGAATTTTGCGTGAAGCATGCTGAGTGCCCTGTGATCACAATCAAGCGCAGCGCAGAGGAAACACCTCAGGATCCTGTTGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

176

Amino Acids

19.7

Weight (kDa)

6.17

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01520 AT5G14680
fragaria_vesca	FvH4_6g50880
malus_domestica	MD09G1031200.v1.1 MD17G1033100.v1.1
prunus_persica	Prupe.3G286400_v2.0.a1
pyrus_communis	pycom17g03050
rosa_chinensis	RchiOBHm_Chr2g0172261
rosa_laevigata	RLG00000022099
rosa_multiflora	Rmu_ssc0000103.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080020
rosa_rugosa	Rorug02G0558200
rosa_samantha	Rh2AG633200 Rh2BG646800 Rh2CG613800 Rh2DG661700
rosa_wichuraiana	Rw2G052430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	57
AccBSI	CCGCTC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	1 cut(s)	246
AciI	CCGC	3 cut(s)	62, 118, 244
AclWI	GGATC	4 cut(s)	326, 339, 506, 519
AcsI	RAATTY	1 cut(s)	443
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	3 cut(s)	139, 223, 281
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	4 cut(s)	326, 339, 506, 519
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	4 cut(s)	78, 370, 393, 489
ApoI	RAATTY	1 cut(s)	443
Asp718I	GGTACC	1 cut(s)	57
AspLEI	GCGC	3 cut(s)	248, 489, 494
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	3 cut(s)	20, 201, 370
AvaII	GGWCC	1 cut(s)	407
AxyI	CCTNAGG	2 cut(s)	213, 507
BaeGI	GKGCMC	1 cut(s)	470
BamHI	GGATCC	2 cut(s)	331, 511
BanI	GGYRCC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	4 cut(s)	90, 380, 382, 501
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	1 cut(s)	234
BisI	GCNGC	4 cut(s)	79, 371, 394, 490
BlsI	GCNGC	4 cut(s)	80, 372, 395, 491
Bme1390I	CCNGG	1 cut(s)	398
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	3 cut(s)	59, 333, 513
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	336, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse21I	CCTNAGG	2 cut(s)	213, 507
Bse8I	GATNNNNATC	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	336, 397
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	4 cut(s)	204, 221, 453, 521
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	4 cut(s)	90, 380, 382, 501
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	2 cut(s)	149, 445
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	2 cut(s)	149, 445
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp143I	GATC	5 cut(s)	48, 111, 331, 474, 511
BspACI	CCGC	3 cut(s)	62, 118, 244
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	4 cut(s)	205, 222, 454, 520
BspFNI	CGCG	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	59, 333, 513
BspPI	GGATC	4 cut(s)	326, 339, 506, 519
BspT107I	GGYRCC	1 cut(s)	57
BspTNI	GGTCTC	1 cut(s)	234
BsrBI	CCGCTC	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	336, 397
BssMI	GATC	5 cut(s)	48, 111, 331, 474, 511
BssT1I	CCWWGG	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	179, 436
Bst6I	CTCTTC	1 cut(s)	152
BstC8I	GCNNGC	3 cut(s)	30, 66, 459
BstDEI	CTNAG	4 cut(s)	213, 230, 462, 507
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	3 cut(s)	248, 489, 494
BstKTI	GATC	5 cut(s)	51, 114, 334, 477, 514
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	5 cut(s)	48, 111, 331, 474, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 370
BstNSI	RCATGY	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	470
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	4 cut(s)	90, 380, 382, 501
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	2 cut(s)	331, 511
BstYI	RGATCY	2 cut(s)	331, 511
Bsu36I	CCTNAGG	2 cut(s)	213, 507
BsuRI	GGCC	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	39, 441
Cac8I	GCNNGC	3 cut(s)	30, 66, 459
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	3 cut(s)	248, 489, 494
Cfr13I	GGNCC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	6 cut(s)	155, 190, 290, 315, 353, 458
CviJI	RGCY	7 cut(s)	13, 89, 135, 142, 256, 373, 393
CviKI_1	RGCY	7 cut(s)	13, 89, 135, 142, 256, 373, 393
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	4 cut(s)	213, 230, 462, 507
DpnI	GATC	5 cut(s)	50, 113, 333, 476, 513
DpnII	GATC	5 cut(s)	48, 111, 331, 474, 511
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	336
Eco147I	AGGCCT	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	407
Eco81I	CCTNAGG	2 cut(s)	213, 507
EcoT14I	CCWWGG	1 cut(s)	336
EcoT22I	ATGCAT	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	6 cut(s)	158, 193, 293, 318, 356, 461
FaiI	YATR	9 cut(s)	74, 108, 156, 191, 204, 291, 316, 354, 459
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	2 cut(s)	149, 445
FatI	CATG	6 cut(s)	154, 189, 289, 314, 352, 457
FauI	CCCGC	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	474
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	4 cut(s)	79, 371, 394, 490
Fsp4HI	GCNGC	4 cut(s)	79, 371, 394, 490
GlaI	GCGC	3 cut(s)	247, 488, 493
GluI	GCNGC	4 cut(s)	79, 371, 394, 490
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	397
HhaI	GCGC	3 cut(s)	248, 489, 494
Hin1II	CATG	6 cut(s)	158, 193, 293, 318, 356, 461
Hin6I	GCGC	3 cut(s)	246, 487, 492
HinP1I	GCGC	3 cut(s)	246, 487, 492
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	41, 100
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	3 cut(s)	20, 201, 370
Hpy166II	GTNNAC	3 cut(s)	37, 45, 99
Hpy188I	TCNGA	2 cut(s)	21, 231
Hpy188III	TCNNGA	3 cut(s)	353, 415, 509
Hpy8I	GTNNAC	3 cut(s)	37, 45, 99
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	100, 161
HpyCH4III	ACNGT	2 cut(s)	179, 436
HpyCH4V	TGCA	4 cut(s)	106, 206, 293, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 370
HpyF3I	CTNAG	4 cut(s)	213, 230, 462, 507
Hsp92II	CATG	6 cut(s)	158, 193, 293, 318, 356, 461
HspAI	GCGC	3 cut(s)	246, 487, 492
KpnI	GGTACC	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	5 cut(s)	48, 111, 331, 474, 511
LmnI	GCTCC	2 cut(s)	125, 147
Lsp1109I	GCAGC	4 cut(s)	90, 380, 382, 501
LweI	GCATC	1 cut(s)	215
MalI	GATC	5 cut(s)	50, 113, 333, 476, 513
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	5 cut(s)	48, 111, 331, 474, 511
MboII	GAAGA	2 cut(s)	139, 185
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	2 cut(s)	331, 511
MhlI	GDGCHC	1 cut(s)	470
MluCI	AATT	2 cut(s)	294, 443
MlyI	GAGTC	2 cut(s)	50, 94
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	9 cut(s)	79, 139, 155, 208, 225, 349, 411, 490, 516
Mph1103I	ATGCAT	1 cut(s)	208
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	1 cut(s)	398
MteI	GCGCNGCGC	1 cut(s)	490
MunI	CAATTG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	262, 370
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	5 cut(s)	48, 111, 331, 474, 511
NlaIII	CATG	6 cut(s)	158, 193, 293, 318, 356, 461
NlaIV	GGNNCC	3 cut(s)	59, 333, 513
NsiI	ATGCAT	1 cut(s)	208
NspI	RCATGY	1 cut(s)	461
PaeI	GCATGC	1 cut(s)	461
PagI	TCATGA	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	89
PkrI	GCNGC	4 cut(s)	80, 372, 395, 491
PleI	GAGTC	2 cut(s)	49, 94
PpsI	GAGTC	2 cut(s)	49, 94
PspN4I	GGNNCC	3 cut(s)	59, 333, 513
PspPI	GGNCC	1 cut(s)	407
PsuI	RGATCY	2 cut(s)	331, 511
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SalI	GTCGAC	1 cut(s)	43
SatI	GCNGC	4 cut(s)	79, 371, 394, 490
Sau3AI	GATC	5 cut(s)	48, 111, 331, 474, 511
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	2 cut(s)	50, 94
ScrFI	CCNGG	1 cut(s)	398
SduI	GDGCHC	1 cut(s)	470
SetI	ASST	5 cut(s)	131, 144, 214, 360, 508
SfaNI	GCATC	1 cut(s)	215
SinI	GGWCC	1 cut(s)	407
SphI	GCATGC	1 cut(s)	461
Sse9I	AATT	2 cut(s)	294, 443
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	3 cut(s)	62, 118, 244
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	179, 436
TaqI	TCGA	2 cut(s)	44, 93
TasI	AATT	2 cut(s)	294, 443
TscAI	CASTG	2 cut(s)	39, 441
TseI	GCWGC	4 cut(s)	78, 370, 393, 489
TspDTI	ATGAA	2 cut(s)	143, 248
TspRI	CASTG	2 cut(s)	39, 441
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	1 cut(s)	443
XceI	RCATGY	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	44
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.