AT5G14680

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014139
Physical Location & Seq
Reverse (-)
4730836 .. 4733225
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14680.1

Sequence Viewer

Length: 528 bp
ATGGAGAGCGAGCCTACTCGAGTGATGGTGGCGGTGAATGAATCGACTCTCAAAGGCTATCCACACGCGTCGATAAGTAGCAAAAAAGCATTCGAGTGGACACTGAAGAAGATCGTTCGGTCCAATACCTCTGGCTTCAAGCTTCTCTTGCTCCACGTTCAAGTTCAAGACGAAGACGGTTTTGATGACATGGACAGTATATATGCTTCCCCTGATGATTTCCGACAAATGAGGGAGCGTAACAAGGCTAAAGGACTTCACCTTCTTGAGTTTTTCGTTAAGAAATGTCATGATATTGGGGTTGGGTGCGAGGCTTGGATCAGGAAAGGTGATCCCACAGAATTGATATGCCATGAAGTGAGGCGAGTCCGGCCAGATTTTCTGGTTGTGGGAAGTCGTGGTCTCGGCCCATTCCAAAAGGTATTTGTTGGAACAGTGAGTGAATTTTGTGTGAAGCATGCAGAATGCCCAGTCATCACAATCAAACGCACTGCTGAAGAATCTCCACAAGATCCAGCTGATGACTAA

Protein Analysis

175

Amino Acids

19.79

Weight (kDa)

6.31

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 23 - 162 5e-18 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01520 AT5G14680
fragaria_vesca FvH4_6g50880
malus_domestica MD09G1031200.v1.1 MD17G1033100.v1.1
prunus_persica Prupe.3G286400_v2.0.a1
pyrus_communis pycom17g03050
rosa_chinensis RchiOBHm_Chr2g0172261
rosa_laevigata RLG00000022099
rosa_multiflora Rmu_ssc0000103.1_g000006
rosa_roxburghii Rroxscaffold_2G00080020
rosa_rugosa Rorug02G0558200
rosa_samantha Rh2AG633200 Rh2BG646800 Rh2CG613800 Rh2DG661700
rosa_wichuraiana Rw2G052430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 68
AciI CCGC 1 cut(s) 32
AclWI GGATC 3 cut(s) 326, 326, 506
AcoI YGGCCR 1 cut(s) 371
AcsI RAATTY 1 cut(s) 443
AcuI CTGAAG 2 cut(s) 125, 516
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 3 cut(s) 139, 161, 167
AluBI AGCT 2 cut(s) 142, 518
AluI AGCT 2 cut(s) 142, 518
Alw26I GTCTC 1 cut(s) 407
AlwI GGATC 3 cut(s) 326, 326, 506
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 2 cut(s) 371, 406
ApoI RAATTY 1 cut(s) 443
AspS9I GGNCC 2 cut(s) 120, 407
AsuHPI GGTGA 3 cut(s) 46, 251, 341
AvaI CYCGRG 1 cut(s) 18
AvaII GGWCC 1 cut(s) 120
BarI GAAGNNNNNNTAC 2 cut(s) 190, 222
BbsI GAAGAC 1 cut(s) 180
BccI CCATC 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 18
BmgT120I GGNCC 2 cut(s) 120, 407
BmrI ACTGGG 1 cut(s) 464
BmuI ACTGGG 1 cut(s) 464
BpiI GAAGAC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 470
BseNI ACTGG 1 cut(s) 470
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 2 cut(s) 373, 408
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 407
BsmI GAATGC 2 cut(s) 89, 470
BsnI GGCC 2 cut(s) 373, 408
Bso31I GGTCTC 1 cut(s) 407
BsoBI CYCGRG 1 cut(s) 18
Bsp143I GATC 4 cut(s) 111, 318, 331, 511
BspACI CCGC 1 cut(s) 32
BspANI GGCC 2 cut(s) 373, 408
BspFNI CGCG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 289
BspPI GGATC 3 cut(s) 326, 326, 506
BspTNI GGTCTC 1 cut(s) 407
BsrI ACTGG 1 cut(s) 470
BssMI GATC 4 cut(s) 111, 318, 331, 511
Bst4CI ACNGT 3 cut(s) 179, 197, 436
BstC8I GCNNGC 2 cut(s) 11, 459
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 4 cut(s) 114, 321, 334, 514
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 4 cut(s) 111, 318, 331, 511
BstMWI GCNNNNNNNGC 2 cut(s) 148, 370
BstNSI RCATGY 1 cut(s) 461
BstUI CGCG 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BsuRI GGCC 2 cut(s) 373, 408
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 3 cut(s) 101, 441, 489
Cac8I GCNNGC 2 cut(s) 11, 459
CciI TCATGA 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 120, 407
CseI GACGC 1 cut(s) 57
CviAII CATG 4 cut(s) 190, 290, 353, 458
CviJI RGCY 9 cut(s) 13, 57, 135, 142, 248, 314, 373, 408, 518
CviKI_1 RGCY 9 cut(s) 13, 57, 135, 142, 248, 314, 373, 408, 518
DpnI GATC 4 cut(s) 113, 320, 333, 513
DpnII GATC 4 cut(s) 111, 318, 331, 511
EaeI YGGCCR 1 cut(s) 371
Eco31I GGTCTC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 120
Eco57I CTGAAG 2 cut(s) 125, 516
Eco88I CYCGRG 1 cut(s) 18
FaeI CATG 4 cut(s) 193, 293, 356, 461
FaiI YATR 8 cut(s) 191, 200, 202, 204, 291, 349, 354, 459
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FatI CATG 4 cut(s) 189, 289, 352, 457
HaeIII GGCC 2 cut(s) 373, 408
HapII CCGG 1 cut(s) 370
HgaI GACGC 1 cut(s) 57
Hin1II CATG 4 cut(s) 193, 293, 356, 461
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 4 cut(s) 41, 46, 366, 500
HpaII CCGG 1 cut(s) 370
HphI GGTGA 3 cut(s) 46, 251, 341
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 224
Hpy188III TCNNGA 4 cut(s) 167, 266, 290, 322
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 3 cut(s) 179, 197, 436
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 370
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 4 cut(s) 193, 293, 356, 461
Kzo9I GATC 4 cut(s) 111, 318, 331, 511
LmnI GCTCC 2 cut(s) 156, 235
LpnPI CCDG 7 cut(s) 117, 225, 307, 368, 383, 387, 483
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 239
MalI GATC 4 cut(s) 113, 320, 333, 513
MboI GATC 4 cut(s) 111, 318, 331, 511
MboII GAAGA 4 cut(s) 118, 121, 185, 509
MflI RGATCY 1 cut(s) 511
MluCI AATT 2 cut(s) 341, 443
MluI ACGCGT 1 cut(s) 66
MlyI GAGTC 2 cut(s) 40, 375
MmeI TCCRAC 2 cut(s) 247, 409
MnlI CCTC 4 cut(s) 139, 225, 304, 354
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 1 cut(s) 370
Mva1269I GAATGC 2 cut(s) 89, 470
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 148, 370
NdeII GATC 4 cut(s) 111, 318, 331, 511
NlaIII CATG 4 cut(s) 193, 293, 356, 461
NmeAIII GCCGAG 1 cut(s) 384
NspI RCATGY 1 cut(s) 461
PaeI GCATGC 1 cut(s) 461
PaeR7I CTCGAG 1 cut(s) 18
PagI TCATGA 1 cut(s) 289
PctI GAATGC 2 cut(s) 89, 470
PfeI GAWTC 2 cut(s) 41, 500
PleI GAGTC 2 cut(s) 40, 374
PpsI GAGTC 2 cut(s) 40, 374
PspPI GGNCC 2 cut(s) 120, 407
PspXI VCTCGAGB 1 cut(s) 18
PsuI RGATCY 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 518
RseI CAYNNNNRTG 1 cut(s) 94
SaqAI TTAA 1 cut(s) 279
Sau3AI GATC 4 cut(s) 111, 318, 331, 511
Sau96I GGNCC 2 cut(s) 120, 407
SchI GAGTC 2 cut(s) 40, 375
SetI ASST 7 cut(s) 131, 144, 159, 264, 331, 423, 520
Sfr274I CTCGAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 120
SlaI CTCGAG 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 94
SmlI CTYRAG 2 cut(s) 18, 266
SmoI CTYRAG 2 cut(s) 18, 266
SphI GCATGC 1 cut(s) 461
Sse9I AATT 2 cut(s) 341, 443
SsiI CCGC 1 cut(s) 32
TaaI ACNGT 3 cut(s) 179, 197, 436
TaiI ACGT 1 cut(s) 159
TaqI TCGA 4 cut(s) 19, 44, 71, 93
TaqII GACCGA 1 cut(s) 108
TasI AATT 2 cut(s) 341, 443
TfiI GAWTC 2 cut(s) 41, 500
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 3 cut(s) 108, 441, 496
TspDTI ATGAA 2 cut(s) 54, 369
TspRI CASTG 3 cut(s) 108, 441, 496
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 1 cut(s) 443
XceI RCATGY 1 cut(s) 461
XhoI CTCGAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.