Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012366

Physical Location & Seq

Genomic Coordinates Forward (+)

1033579 .. 1035237

Gene Structure 1659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAGTCAACACAACATCTTAGAAGCTCTAAATGTCCGGGTCGTGGGTACGGGTGATCGGATCCTGTTTTTGGCCCATGGATTCGGTACTGACCAATCAGCTTGGCACTTGATCCTTCCTTACTTCACTCAAAACTACAGAGTCGTCCTCTATGACCTAGTTTGCGCCGGCAGTGTCAACCCCGATTACTTCGATTTCAATCGTTACACAACTCTCGATCCTTACGTCGATGATCTTCTCAACATCGTTGATTCACTCGGAATCCAAAACTGTGCTTACGTTGGTCACTCTGTTTCCGCTATGATCGGAATCATCGCTTCGATTCGTCGGCCGGAGCTTTTCTCCAAGCTTATCTTGATCGGATTTTCGCCTAGGTTTCTCAACGACGAGGATTATCATGGAGGATTCGAAGAAGGTGAGATTGAGAAAGTTTTCTCAGCTATGGAAGCTAATTACGAAGCTTGGGTTCATGGATTTGCTCCGCTTGCTGTTGGAGCTGATGTTCCGGCGGCGGTTAGAGAATTTAGCCGGACTTTGTTTAATATGCGTCCGGATATATCTCTGTTTGTTTCGAGGACGGTTTTCAACAGCGATCTGAGAGGTGTGCTTGGGTTAGTTAGAGTTCCGACGTGTGTGATTCAGACGGCGAAGGATGTTTCTGTGCCGGCTTCGGTGGCGGAGTATCTTAGGTCTCATCTCGGTGGAGATACTACTGTGGAGACTCTTAAAACTGAAGGACATTTGCCGCAGCTTAGTGCTCCGGCGCAGCTTGCTCAGTTTCTCCGGCGAGCTCTTCCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010817 GO:0014070 GO:0016106 GO:0016114 GO:0018130 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1901700 GO:1901701 GO:1902347 GO:1902348 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

267

Amino Acids

29.62

Weight (kDa)

5.44

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	22 - 253	4.7e-11	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	23 - 259	2.9e-13	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03990
fragaria_vesca	FvH4_2g33160
malus_domestica	MD08G1084500.v1.1 MD08G1084800.v1.1 MD15G1070700.v1.1
prunus_persica	Prupe.1G423400_v2.0.a1
pyrus_communis	pycom08g07000 pycom15g06640
rosa_chinensis	RchiOBHm_Chr6g0309501
rosa_laevigata	RLG00000010560
rosa_multiflora	Rmu_co8437415.1_g000001 Rmu_sc0007283.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159350
rosa_rugosa	Rorug06G0372500
rosa_samantha	Rh6AG485800 Rh6BG495200 Rh6CG500200 Rh6DG486100
rosa_wichuraiana	Rw6G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	6 cut(s)	297, 482, 509, 512, 677, 746
AclWI	GGATC	4 cut(s)	55, 68, 106, 212
AcoI	YGGCCR	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	2 cut(s)	49, 88
AfiI	CCNNNNNNNGG	2 cut(s)	43, 70
AflIII	ACRYGT	1 cut(s)	629
AgsI	TTSAA	2 cut(s)	199, 586
AjiI	CACGTC	1 cut(s)	630
AloI	GAACNNNNNNTCC	2 cut(s)	486, 518
Alw21I	GWGCWC	2 cut(s)	760, 793
Alw26I	GTCTC	2 cut(s)	696, 713
AlwI	GGATC	4 cut(s)	55, 68, 106, 212
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	2 cut(s)	72, 329
ApeKI	GCWGC	2 cut(s)	748, 766
ApoI	RAATTY	1 cut(s)	521
Asp700I	GAANNNNTTC	1 cut(s)	431
AspA2I	CCTAGG	1 cut(s)	371
AspLEI	GCGC	2 cut(s)	167, 766
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	65, 428
AsuII	TTCGAA	1 cut(s)	408
AvrII	CCTAGG	1 cut(s)	371
BaeI	ACNNNNGTAYC	2 cut(s)	699, 732
BamHI	GGATCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	793
Bbv12I	GWGCWC	2 cut(s)	760, 793
BbvI	GCAGC	2 cut(s)	760, 778
BceAI	ACGGC	1 cut(s)	660
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	696, 713
BfaI	CTAG	2 cut(s)	158, 372
BfmI	CTRYAG	1 cut(s)	136
BisI	GCNGC	4 cut(s)	510, 746, 749, 767
BlnI	CCTAGG	1 cut(s)	371
BlsI	GCNGC	4 cut(s)	511, 747, 750, 768
Bme1390I	CCNGG	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	630
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	38
BplI	GAGNNNNNCTC	4 cut(s)	132, 164, 326, 358
Bpu14I	TTCGAA	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	38
BsaBI	GATNNNNATC	2 cut(s)	198, 308
BsaI	GGTCTC	1 cut(s)	696
BsaJI	CCNNGG	3 cut(s)	76, 371, 797
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 70
Bse118I	RCCGGY	2 cut(s)	167, 664
Bse8I	GATNNNNATC	2 cut(s)	198, 308
BseAI	TCCGGA	1 cut(s)	550
BseDI	CCNNGG	3 cut(s)	76, 371, 797
BseGI	GGATG	1 cut(s)	658
BseJI	GATNNNNATC	2 cut(s)	198, 308
BseLI	CCNNNNNNNGG	2 cut(s)	43, 70
BseMII	CTCAG	3 cut(s)	450, 587, 788
BseX3I	CGGCCG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	760, 778
Bsh1285I	CGRYCG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	74, 331
BsiEI	CGRYCG	1 cut(s)	332
BsiHKAI	GWGCWC	2 cut(s)	760, 793
BsiSI	CCGG	9 cut(s)	37, 168, 332, 506, 529, 551, 665, 761, 784
BslI	CCNNNNNNNGG	2 cut(s)	43, 70
BsmAI	GTCTC	2 cut(s)	696, 713
BsnI	GGCC	2 cut(s)	74, 331
Bso31I	GGTCTC	1 cut(s)	696
Bsp119I	TTCGAA	1 cut(s)	408
Bsp1286I	GDGCHC	2 cut(s)	760, 793
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	8 cut(s)	55, 60, 111, 217, 232, 303, 357, 592
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	6 cut(s)	297, 482, 509, 512, 677, 746
BspANI	GGCC	2 cut(s)	74, 331
BspCNI	CTCAG	3 cut(s)	449, 588, 787
BspEI	TCCGGA	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	4 cut(s)	55, 68, 106, 212
BspQI	GCTCTTC	1 cut(s)	798
BspT104I	TTCGAA	1 cut(s)	408
BspTNI	GGTCTC	1 cut(s)	696
BsrFI	RCCGGY	2 cut(s)	167, 664
BssAI	RCCGGY	2 cut(s)	167, 664
BssECI	CCNNGG	3 cut(s)	76, 371, 797
BssMI	GATC	8 cut(s)	55, 60, 111, 217, 232, 303, 357, 592
BssT1I	CCWWGG	2 cut(s)	76, 371
Bst4CI	ACNGT	3 cut(s)	272, 580, 715
Bst6I	CTCTTC	1 cut(s)	798
BstBI	TTCGAA	1 cut(s)	408
BstC8I	GCNNGC	5 cut(s)	169, 486, 666, 771, 789
BstDEI	CTNAG	6 cut(s)	19, 436, 596, 686, 752, 774
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	658
BstHHI	GCGC	2 cut(s)	167, 766
BstKTI	GATC	8 cut(s)	58, 63, 114, 220, 235, 306, 360, 595
BstMAI	GTCTC	2 cut(s)	696, 713
BstMBI	GATC	8 cut(s)	55, 60, 111, 217, 232, 303, 357, 592
BstMCI	CGRYCG	1 cut(s)	332
BstMWI	GCNNNNNNNGC	5 cut(s)	446, 485, 494, 674, 770
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	2 cut(s)	760, 778
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BstZI	CGGCCG	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	74, 331
BtgI	CCRYGG	1 cut(s)	76
BtgZI	GCGATG	1 cut(s)	298
BtrI	CACGTC	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	658
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	5 cut(s)	169, 486, 666, 771, 789
CfoI	GCGC	2 cut(s)	167, 766
Cfr10I	RCCGGY	2 cut(s)	167, 664
Cfr13I	GGNCC	1 cut(s)	73
CseI	GACGC	1 cut(s)	536
Csp6I	GTAC	2 cut(s)	48, 87
CviAII	CATG	3 cut(s)	77, 398, 470
CviQI	GTAC	2 cut(s)	48, 87
DdeI	CTNAG	6 cut(s)	19, 436, 596, 686, 752, 774
DpnI	GATC	8 cut(s)	57, 62, 113, 219, 234, 305, 359, 594
DpnII	GATC	8 cut(s)	55, 60, 111, 217, 232, 303, 357, 592
EaeI	YGGCCR	1 cut(s)	329
EagI	CGGCCG	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
EciI	GGCGGA	1 cut(s)	692
Ecl136II	GAGCTC	1 cut(s)	791
EclXI	CGGCCG	1 cut(s)	329
Eco130I	CCWWGG	2 cut(s)	76, 371
Eco24I	GRGCYC	1 cut(s)	793
Eco31I	GGTCTC	1 cut(s)	696
Eco52I	CGGCCG	1 cut(s)	329
Eco53kI	GAGCTC	1 cut(s)	791
Eco57I	CTGAAG	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	791
EcoT14I	CCWWGG	2 cut(s)	76, 371
EcoT38I	GRGCYC	1 cut(s)	793
ErhI	CCWWGG	2 cut(s)	76, 371
FaeI	CATG	3 cut(s)	80, 401, 473
FaiI	YATR	8 cut(s)	78, 153, 302, 399, 443, 471, 545, 557
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	3 cut(s)	76, 397, 469
Fnu4HI	GCNGC	4 cut(s)	510, 746, 749, 767
FokI	GGATG	1 cut(s)	665
FriOI	GRGCYC	1 cut(s)	793
Fsp4HI	GCNGC	4 cut(s)	510, 746, 749, 767
FspBI	CTAG	2 cut(s)	158, 372
GlaI	GCGC	2 cut(s)	166, 765
GluI	GCNGC	4 cut(s)	510, 746, 749, 767
HaeIII	GGCC	2 cut(s)	74, 331
HapII	CCGG	9 cut(s)	37, 168, 332, 506, 529, 551, 665, 761, 784
HgaI	GACGC	1 cut(s)	536
HhaI	GCGC	2 cut(s)	167, 766
Hin1II	CATG	3 cut(s)	80, 401, 473
Hin6I	GCGC	2 cut(s)	165, 764
HinP1I	GCGC	2 cut(s)	165, 764
HincII	GTYRAC	2 cut(s)	8, 178
HindII	GTYRAC	2 cut(s)	8, 178
HindIII	AAGCTT	2 cut(s)	347, 459
HpaII	CCGG	9 cut(s)	37, 168, 332, 506, 529, 551, 665, 761, 784
HphI	GGTGA	2 cut(s)	65, 428
Hpy166II	GTNNAC	2 cut(s)	8, 178
Hpy188I	TCNGA	7 cut(s)	60, 260, 308, 362, 597, 627, 642
Hpy188III	TCNNGA	3 cut(s)	215, 355, 551
Hpy8I	GTNNAC	2 cut(s)	8, 178
Hpy99I	CGWCG	4 cut(s)	230, 330, 389, 631
HpyAV	CCTTC	4 cut(s)	125, 407, 643, 728
HpyCH4III	ACNGT	3 cut(s)	272, 580, 715
HpyCH4IV	ACGT	3 cut(s)	225, 279, 629
HpyF10VI	GCNNNNNNNGC	5 cut(s)	446, 485, 494, 674, 770
HpyF3I	CTNAG	6 cut(s)	19, 436, 596, 686, 752, 774
HpySE526I	ACGT	3 cut(s)	225, 279, 629
Hsp92II	CATG	3 cut(s)	80, 401, 473
HspAI	GCGC	2 cut(s)	165, 764
Kpn2I	TCCGGA	1 cut(s)	550
KroI	GCCGGC	2 cut(s)	167, 664
KroNI	GCCGGC	2 cut(s)	169, 666
Kzo9I	GATC	8 cut(s)	55, 60, 111, 217, 232, 303, 357, 592
LguI	GCTCTTC	1 cut(s)	798
LmnI	GCTCC	4 cut(s)	334, 484, 494, 763
Lsp1109I	GCAGC	2 cut(s)	760, 778
MaeI	CTAG	2 cut(s)	158, 372
MaeII	ACGT	3 cut(s)	225, 279, 629
MaeIII	GTNAC	2 cut(s)	203, 284
MalI	GATC	8 cut(s)	57, 62, 113, 219, 234, 305, 359, 594
MboI	GATC	8 cut(s)	55, 60, 111, 217, 232, 303, 357, 592
MboII	GAAGA	3 cut(s)	227, 422, 785
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	760, 793
MluCI	AATT	2 cut(s)	451, 521
MlyI	GAGTC	3 cut(s)	13, 150, 715
MmeI	TCCRAC	2 cut(s)	472, 650
MnlI	CCTC	5 cut(s)	158, 382, 395, 567, 593
MroI	TCCGGA	1 cut(s)	550
MroNI	GCCGGC	2 cut(s)	167, 664
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	2 cut(s)	540, 726
MslI	CAYNNNNRTG	1 cut(s)	699
MspI	CCGG	9 cut(s)	37, 168, 332, 506, 529, 551, 665, 761, 784
MspR9I	CCNGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	5 cut(s)	446, 485, 494, 674, 770
NaeI	GCCGGC	2 cut(s)	169, 666
NciI	CCSGG	1 cut(s)	38
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	8 cut(s)	55, 60, 111, 217, 232, 303, 357, 592
NgoMIV	GCCGGC	2 cut(s)	167, 664
NlaIII	CATG	3 cut(s)	80, 401, 473
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	284
NspV	TTCGAA	1 cut(s)	408
PciSI	GCTCTTC	1 cut(s)	798
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	2 cut(s)	169, 666
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	7 cut(s)	81, 251, 261, 309, 322, 405, 637
PkrI	GCNGC	4 cut(s)	511, 747, 750, 768
PleI	GAGTC	3 cut(s)	12, 149, 715
PpsI	GAGTC	3 cut(s)	12, 149, 715
Psp124BI	GAGCTC	1 cut(s)	793
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	60
RsaI	GTAC	2 cut(s)	49, 88
RsaNI	GTAC	2 cut(s)	48, 87
RseI	CAYNNNNRTG	1 cut(s)	699
SacI	GAGCTC	1 cut(s)	793
SapI	GCTCTTC	1 cut(s)	798
SaqAI	TTAA	2 cut(s)	540, 726
SatI	GCNGC	4 cut(s)	510, 746, 749, 767
Sau3AI	GATC	8 cut(s)	55, 60, 111, 217, 232, 303, 357, 592
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	3 cut(s)	13, 150, 715
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	760, 793
SfcI	CTRYAG	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	699
Sse9I	AATT	2 cut(s)	451, 521
SsiI	CCGC	6 cut(s)	297, 482, 509, 512, 677, 746
SspMI	CTAG	2 cut(s)	158, 372
SstI	GAGCTC	1 cut(s)	793
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	2 cut(s)	76, 371
TaaI	ACNGT	3 cut(s)	272, 580, 715
TaiI	ACGT	3 cut(s)	228, 282, 632
TaqI	TCGA	6 cut(s)	192, 216, 228, 320, 408, 572
TasI	AATT	2 cut(s)	451, 521
TauI	GCSGC	2 cut(s)	512, 748
TfiI	GAWTC	7 cut(s)	81, 251, 261, 309, 322, 405, 637
Tru1I	TTAA	2 cut(s)	540, 726
Tru9I	TTAA	2 cut(s)	540, 726
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	2 cut(s)	748, 766
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	458
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	521
XmaJI	CCTAGG	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	2 cut(s)	158, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.