Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012366

Physical Location & Seq

Genomic Coordinates Reverse (-)

5580603 .. 5581520

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g07000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGTCAGCACCACCATCCTCGACGCTCTCAACGTCCGCGTCGTTGGCTCCGGCGATAAGTACGTCGTCTTCGCCCACGGCTTCGGCACCGACCAGTCCGCCTGGCAGCGCGTTCTCCAGTACTTCACGCCATACTACCGCGTCATTCTCTACGACCTCGTCTGCGCCGGCAGCGTCAACCCGGACTACTTCGACTTCCGCCGCTACACCACCCTCGACGCCTACGTCGACGACCTCCTCAACATTCTCCACGCCCTCGGCGTCAACCGCTGCGCCTATGTTGGCCACTCCGTCTCTGCCATGATCGGCATCCTCGCTTCCATCCGCCGCCCCGAACTCTTCTCCAAGCTCGTACTCATCGGCGCTTCCCCGAGGTTTCTGAACGATCGAGATTACCATGGAGGATTCGAGCAGGAGGAGATTGAGAAGGTGTTTTCGGCAATGGAGGCCAATTACGAGGCATGGGTCCAAGGCTTTGCGCCGCTGGCCGTTGGGGCCGACGTCCCGACAGCGGTCCGAGAATTCAGCCGTACCCTGTTCAACATGCGACCCGACATCTCGCTTTTCGTGTCTCGGGCCGTGTTCAACAGCGATTTGAGGGGGGTTTTGGGGCTGGTCCGAGTGCCGTGCTGGATAATCCAGACGGCGAAGGACGTGTCCGTGCCGGCGTCGGTGGCGAACTACCTGAGGGATCACCTGGGCGGTCGGAACACGGTGGTGATTCTGGAGACGGAAGGGCACTTGCCCCATCTGAGCGCCCCGGGTTTGCTGGCACGGAAGCTTCGCCACGCCCTTGCGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010817 GO:0014070 GO:0016106 GO:0016114 GO:0018130 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1901700 GO:1901701 GO:1902347 GO:1902348 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

268

Amino Acids

29.67

Weight (kDa)

6.7

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03990
fragaria_vesca	FvH4_2g33160
malus_domestica	MD08G1084500.v1.1 MD08G1084800.v1.1 MD15G1070700.v1.1
prunus_persica	Prupe.1G423400_v2.0.a1
pyrus_communis	pycom08g07000 pycom15g06640
rosa_chinensis	RchiOBHm_Chr6g0309501
rosa_laevigata	RLG00000010560
rosa_multiflora	Rmu_co8437415.1_g000001 Rmu_sc0007283.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159350
rosa_rugosa	Rorug06G0372500
rosa_samantha	Rh6AG485800 Rh6BG495200 Rh6CG500200 Rh6DG486100
rosa_wichuraiana	Rw6G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AatII	GACGTC	1 cut(s)	504
AccB1I	GGYRCC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	3 cut(s)	39, 111, 141
AclWI	GGATC	1 cut(s)	699
AcoI	YGGCCR	2 cut(s)	283, 486
AcsI	RAATTY	1 cut(s)	521
AcyI	GRCGYC	4 cut(s)	219, 261, 501, 668
AfaI	GTAC	4 cut(s)	62, 122, 354, 532
AfiI	CCNNNNNNNGG	1 cut(s)	511
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	2 cut(s)	541, 586
AjiI	CACGTC	1 cut(s)	655
AjnI	CCWGG	2 cut(s)	101, 696
AleI	CACNNNNGTG	1 cut(s)	716
AluBI	AGCT	2 cut(s)	349, 781
AluI	AGCT	2 cut(s)	349, 781
Alw26I	GTCTC	3 cut(s)	298, 576, 722
AlwI	GGATC	1 cut(s)	699
Ama87I	CYCGRG	3 cut(s)	370, 573, 760
AoxI	GGCC	5 cut(s)	283, 447, 486, 495, 576
ApeKI	GCWGC	3 cut(s)	106, 171, 270
ApoI	RAATTY	1 cut(s)	521
ArsI	GACNNNNNNTTYG	2 cut(s)	641, 673
AspLEI	GCGC	6 cut(s)	111, 167, 275, 365, 481, 758
AspS9I	GGNCC	5 cut(s)	466, 495, 514, 576, 616
AsuC2I	CCSGG	3 cut(s)	182, 761, 762
AsuHPI	GGTGA	2 cut(s)	686, 730
AvaI	CYCGRG	3 cut(s)	370, 573, 760
AvaII	GGWCC	3 cut(s)	466, 514, 616
AxyI	CCTNAGG	1 cut(s)	686
BaeGI	GKGCMC	1 cut(s)	741
BalI	TGGCCA	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	86
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	118, 183, 257
BccI	CCATC	3 cut(s)	23, 329, 756
BceAI	ACGGC	6 cut(s)	94, 473, 513, 563, 610, 660
BcgI	CGANNNNNNTGC	2 cut(s)	609, 643
BciT130I	CCWGG	2 cut(s)	103, 698
BcnI	CCSGG	3 cut(s)	182, 761, 762
BcoDI	GTCTC	3 cut(s)	298, 576, 722
BfoI	RGCGCY	2 cut(s)	366, 759
BglI	GCCNNNNNGGC	1 cut(s)	494
BisI	GCNGC	6 cut(s)	107, 172, 202, 271, 328, 482
BlsI	GCNGC	6 cut(s)	108, 173, 203, 272, 329, 483
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	5 cut(s)	103, 182, 698, 761, 762
Bme18I	GGWCC	3 cut(s)	466, 514, 616
BmeT110I	CYCGRG	3 cut(s)	370, 573, 760
BmgBI	CACGTC	1 cut(s)	655
BmgT120I	GGNCC	5 cut(s)	466, 495, 514, 576, 616
BmiI	GGNNCC	4 cut(s)	49, 88, 467, 496
BmrFI	CCNGG	5 cut(s)	103, 182, 698, 761, 762
BmsI	GCATC	1 cut(s)	318
BoxI	GACNNNNGTC	1 cut(s)	512
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	2 cut(s)	101, 746
BpuMI	CCSGG	3 cut(s)	182, 761, 762
BsaBI	GATNNNNATC	1 cut(s)	308
BsaHI	GRCGYC	4 cut(s)	219, 261, 501, 668
BsaJI	CCNNGG	8 cut(s)	76, 256, 371, 397, 469, 697, 759, 760
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
Bse118I	RCCGGY	2 cut(s)	167, 664
Bse1I	ACTGG	2 cut(s)	94, 118
Bse21I	CCTNAGG	1 cut(s)	686
Bse3DI	GCAATG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	308
BseBI	CCWGG	2 cut(s)	103, 698
BseDI	CCNNGG	8 cut(s)	76, 256, 371, 397, 469, 697, 759, 760
BseGI	GGATG	3 cut(s)	15, 309, 321
BseJI	GATNNNNATC	1 cut(s)	308
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	2 cut(s)	677, 743
BseNI	ACTGG	2 cut(s)	94, 118
BseRI	GAGGAG	2 cut(s)	227, 431
BseSI	GKGCMC	1 cut(s)	741
BseXI	GCAGC	3 cut(s)	118, 183, 257
Bsh1236I	CGCG	3 cut(s)	39, 111, 141
Bsh1285I	CGRYCG	2 cut(s)	388, 706
BshFI	GGCC	5 cut(s)	285, 449, 488, 497, 578
BshNI	GGYRCC	1 cut(s)	86
BsiEI	CGRYCG	2 cut(s)	388, 706
BsiHKCI	CYCGRG	3 cut(s)	370, 573, 760
BsiSI	CCGG	5 cut(s)	51, 168, 182, 665, 761
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmAI	GTCTC	3 cut(s)	298, 576, 722
BsmBI	CGTCTC	2 cut(s)	298, 722
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	5 cut(s)	285, 449, 488, 497, 578
BsoBI	CYCGRG	3 cut(s)	370, 573, 760
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp143I	GATC	3 cut(s)	303, 385, 691
Bsp19I	CCATGG	1 cut(s)	397
BspANI	GGCC	5 cut(s)	285, 449, 488, 497, 578
BspCNI	CTCAG	2 cut(s)	678, 744
BspFNI	CGCG	3 cut(s)	39, 111, 141
BspLI	GGNNCC	4 cut(s)	49, 88, 467, 496
BspPI	GGATC	1 cut(s)	699
BspT107I	GGYRCC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	2 cut(s)	167, 664
BsrI	ACTGG	2 cut(s)	94, 118
BssAI	RCCGGY	2 cut(s)	167, 664
BssECI	CCNNGG	8 cut(s)	76, 256, 371, 397, 469, 697, 759, 760
BssMI	GATC	3 cut(s)	303, 385, 691
BssNI	GRCGYC	4 cut(s)	219, 261, 501, 668
BssT1I	CCWWGG	2 cut(s)	397, 469
Bst2UI	CCWGG	2 cut(s)	103, 698
Bst4CI	ACNGT	1 cut(s)	715
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	4 cut(s)	219, 261, 501, 668
BstC8I	GCNNGC	4 cut(s)	169, 486, 666, 771
BstDEI	CTNAG	2 cut(s)	686, 752
BstDSI	CCRYGG	2 cut(s)	76, 397
BstF5I	GGATG	3 cut(s)	15, 309, 321
BstFNI	CGCG	3 cut(s)	39, 111, 141
BstH2I	RGCGCY	2 cut(s)	366, 759
BstHHI	GCGC	6 cut(s)	111, 167, 275, 365, 481, 758
BstKTI	GATC	3 cut(s)	306, 388, 694
BstMAI	GTCTC	3 cut(s)	298, 576, 722
BstMBI	GATC	3 cut(s)	303, 385, 691
BstMCI	CGRYCG	2 cut(s)	388, 706
BstMWI	GCNNNNNNNGC	7 cut(s)	45, 171, 267, 446, 485, 494, 674
BstNI	CCWGG	2 cut(s)	103, 698
BstNSI	RCATGY	1 cut(s)	547
BstPAI	GACNNNNGTC	1 cut(s)	512
BstSCI	CCNGG	5 cut(s)	101, 180, 696, 759, 760
BstSLI	GKGCMC	1 cut(s)	741
BstUI	CGCG	3 cut(s)	39, 111, 141
BstV1I	GCAGC	3 cut(s)	118, 183, 257
BstV2I	GAAGAC	1 cut(s)	61
Bsu36I	CCTNAGG	1 cut(s)	686
BsuRI	GGCC	5 cut(s)	285, 449, 488, 497, 578
BtgI	CCRYGG	2 cut(s)	76, 397
BtrI	CACGTC	1 cut(s)	655
BtsCI	GGATG	3 cut(s)	15, 309, 321
Cac8I	GCNNGC	4 cut(s)	169, 486, 666, 771
CfoI	GCGC	6 cut(s)	111, 167, 275, 365, 481, 758
Cfr10I	RCCGGY	2 cut(s)	167, 664
Cfr13I	GGNCC	5 cut(s)	466, 495, 514, 576, 616
Cfr9I	CCCGGG	1 cut(s)	760
CpoI	CGGWCCG	1 cut(s)	514
CseI	GACGC	8 cut(s)	28, 32, 130, 163, 227, 250, 657, 786
Csp6I	GTAC	4 cut(s)	61, 121, 353, 531
CspI	CGGWCCG	1 cut(s)	514
CviAII	CATG	4 cut(s)	301, 398, 462, 544
CviQI	GTAC	4 cut(s)	61, 121, 353, 531
DdeI	CTNAG	2 cut(s)	686, 752
DpnI	GATC	3 cut(s)	305, 387, 693
DpnII	GATC	3 cut(s)	303, 385, 691
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	2 cut(s)	283, 486
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
EciI	GGCGGA	3 cut(s)	88, 188, 314
Eco130I	CCWWGG	2 cut(s)	397, 469
Eco47I	GGWCC	3 cut(s)	466, 514, 616
Eco81I	CCTNAGG	1 cut(s)	686
Eco88I	CYCGRG	3 cut(s)	370, 573, 760
EcoRI	GAATTC	1 cut(s)	521
EcoRII	CCWGG	2 cut(s)	101, 696
EcoT14I	CCWWGG	2 cut(s)	397, 469
ErhI	CCWWGG	2 cut(s)	397, 469
Esp3I	CGTCTC	2 cut(s)	298, 722
FaeI	CATG	4 cut(s)	304, 401, 465, 547
FaiI	YATR	6 cut(s)	133, 279, 302, 399, 463, 545
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	4 cut(s)	300, 397, 461, 543
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	6 cut(s)	107, 172, 202, 271, 328, 482
FokI	GGATG	3 cut(s)	2, 296, 308
Fsp4HI	GCNGC	6 cut(s)	107, 172, 202, 271, 328, 482
GlaI	GCGC	6 cut(s)	110, 166, 274, 364, 480, 757
GluI	GCNGC	6 cut(s)	107, 172, 202, 271, 328, 482
GsuI	CTGGAG	2 cut(s)	101, 746
HaeII	RGCGCY	2 cut(s)	366, 759
HaeIII	GGCC	5 cut(s)	285, 449, 488, 497, 578
HapII	CCGG	5 cut(s)	51, 168, 182, 665, 761
HgaI	GACGC	8 cut(s)	28, 32, 130, 163, 227, 250, 657, 786
HhaI	GCGC	6 cut(s)	111, 167, 275, 365, 481, 758
Hin1I	GRCGYC	4 cut(s)	219, 261, 501, 668
Hin1II	CATG	4 cut(s)	304, 401, 465, 547
Hin6I	GCGC	6 cut(s)	109, 165, 273, 363, 479, 756
HinP1I	GCGC	6 cut(s)	109, 165, 273, 363, 479, 756
HincII	GTYRAC	3 cut(s)	178, 229, 265
HindII	GTYRAC	3 cut(s)	178, 229, 265
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	2 cut(s)	405, 721
HpaII	CCGG	5 cut(s)	51, 168, 182, 665, 761
HphI	GGTGA	2 cut(s)	686, 730
Hpy166II	GTNNAC	3 cut(s)	178, 229, 265
Hpy188I	TCNGA	5 cut(s)	381, 518, 620, 708, 753
Hpy188III	TCNNGA	4 cut(s)	389, 505, 640, 725
Hpy8I	GTNNAC	3 cut(s)	178, 229, 265
Hpy99I	CGWCG	9 cut(s)	26, 44, 68, 221, 230, 233, 503, 673, 802
HpyAV	CCTTC	3 cut(s)	421, 643, 728
HpyCH4III	ACNGT	1 cut(s)	715
HpyCH4IV	ACGT	5 cut(s)	33, 63, 225, 501, 654
HpyF10VI	GCNNNNNNNGC	7 cut(s)	45, 171, 267, 446, 485, 494, 674
HpyF3I	CTNAG	2 cut(s)	686, 752
HpySE526I	ACGT	5 cut(s)	33, 63, 225, 501, 654
Hsp92I	GRCGYC	4 cut(s)	219, 261, 501, 668
Hsp92II	CATG	4 cut(s)	304, 401, 465, 547
HspAI	GCGC	6 cut(s)	109, 165, 273, 363, 479, 756
KroI	GCCGGC	2 cut(s)	167, 664
KroNI	GCCGGC	2 cut(s)	169, 666
Kzo9I	GATC	3 cut(s)	303, 385, 691
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	3 cut(s)	118, 183, 257
LweI	GCATC	1 cut(s)	318
MaeII	ACGT	5 cut(s)	33, 63, 225, 501, 654
MalI	GATC	3 cut(s)	305, 387, 693
MboI	GATC	3 cut(s)	303, 385, 691
MboII	GAAGA	2 cut(s)	61, 331
MhlI	GDGCHC	1 cut(s)	741
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	2 cut(s)	451, 521
MluNI	TGGCCA	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	686
Mox20I	TGGCCA	1 cut(s)	285
MroNI	GCCGGC	2 cut(s)	167, 664
MscI	TGGCCA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	716
Msp20I	TGGCCA	1 cut(s)	285
MspA1I	CMGCKG	3 cut(s)	270, 484, 512
MspI	CCGG	5 cut(s)	51, 168, 182, 665, 761
MspR9I	CCNGG	5 cut(s)	103, 182, 698, 761, 762
MvaI	CCWGG	2 cut(s)	103, 698
MvnI	CGCG	3 cut(s)	39, 111, 141
MwoI	GCNNNNNNNGC	7 cut(s)	45, 171, 267, 446, 485, 494, 674
NaeI	GCCGGC	2 cut(s)	169, 666
NciI	CCSGG	3 cut(s)	182, 761, 762
NcoI	CCATGG	1 cut(s)	397
NdeII	GATC	3 cut(s)	303, 385, 691
NgoMIV	GCCGGC	2 cut(s)	167, 664
NlaIII	CATG	4 cut(s)	304, 401, 465, 547
NlaIV	GGNNCC	4 cut(s)	49, 88, 467, 496
NmeAIII	GCCGAG	1 cut(s)	237
NspI	RCATGY	1 cut(s)	547
OliI	CACNNNNGTG	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	5 cut(s)	30, 39, 222, 225, 258
PdiI	GCCGGC	2 cut(s)	169, 666
PfeI	GAWTC	2 cut(s)	405, 721
PflFI	GACNNNGTC	1 cut(s)	158
PkrI	GCNGC	6 cut(s)	108, 173, 203, 272, 329, 483
Ple19I	CGATCG	1 cut(s)	388
PshAI	GACNNNNGTC	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	101, 696
PspGI	CCWGG	2 cut(s)	101, 696
PspN4I	GGNNCC	4 cut(s)	49, 88, 467, 496
PspPI	GGNCC	5 cut(s)	466, 495, 514, 576, 616
PsyI	GACNNNGTC	1 cut(s)	158
PvuI	CGATCG	1 cut(s)	388
RsaI	GTAC	4 cut(s)	62, 122, 354, 532
RsaNI	GTAC	4 cut(s)	61, 121, 353, 531
RseI	CAYNNNNRTG	1 cut(s)	716
Rsr2I	CGGWCCG	1 cut(s)	514
RsrII	CGGWCCG	1 cut(s)	514
SalI	GTCGAC	1 cut(s)	227
SatI	GCNGC	6 cut(s)	107, 172, 202, 271, 328, 482
Sau3AI	GATC	3 cut(s)	303, 385, 691
Sau96I	GGNCC	5 cut(s)	466, 495, 514, 576, 616
ScaI	AGTACT	1 cut(s)	122
ScrFI	CCNGG	5 cut(s)	103, 182, 698, 761, 762
SduI	GDGCHC	1 cut(s)	741
SfaNI	GCATC	1 cut(s)	318
SfiI	GGCCNNNNNGGCC	1 cut(s)	494
SgrDI	CGTCGACG	1 cut(s)	227
SinI	GGWCC	3 cut(s)	466, 514, 616
SmaI	CCCGGG	1 cut(s)	762
SmiMI	CAYNNNNRTG	1 cut(s)	716
Sse9I	AATT	2 cut(s)	451, 521
StyD4I	CCNGG	5 cut(s)	101, 180, 696, 759, 760
StyI	CCWWGG	2 cut(s)	397, 469
TaaI	ACNGT	1 cut(s)	715
TaiI	ACGT	5 cut(s)	36, 66, 228, 504, 657
TaqI	TCGA	6 cut(s)	21, 192, 216, 228, 388, 408
TasI	AATT	2 cut(s)	451, 521
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	3 cut(s)	204, 330, 484
TfiI	GAWTC	2 cut(s)	405, 721
TseI	GCWGC	3 cut(s)	106, 171, 270
TspGWI	ACGGA	4 cut(s)	280, 649, 746, 790
TspMI	CCCGGG	1 cut(s)	760
Tth111I	GACNNNGTC	1 cut(s)	158
VpaK11BI	GGWCC	3 cut(s)	466, 514, 616
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	1 cut(s)	547
XmaI	CCCGGG	1 cut(s)	760
XmiI	GTMKAC	1 cut(s)	228
ZraI	GACGTC	1 cut(s)	502
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.