Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012366

Physical Location & Seq

Genomic Coordinates Reverse (-)

2570675 .. 2572077

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00159350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCCCAGCAACACCAGAATCTTGGAAGCTCTGAATGTCCGGGTAACCGGGTCGGGCGAGCAGTACCTGGTCCTGGCCCATGGCTTCGGCACTGACCAGTCCGCCTGGGGTCGCATTCTTCCTTTCTTCAAACCTTACTACCGCATCGTTCTATACGACCTCGTTTGCGCCGGAAGCGTCAACCCCGATTACTTCGATTTCAACCGCTATACCAACCTGGACGCCTTCGTCGACGACTTGCTCAACATTCTCGACGCTGTGGGAGTCAAAAAGTGCGCCTACGTCGGCCACTCCGTCTCCGCCATGATCGGAATCCTCGCCTCCATTCGCCGCCCCGAGCTCTTCTCCAAGCTCATCCTCATCGGCGCTTCTCCAAGGTTTCTGAACGACAGGGACTACCACGGAGGGTTCGAGCAGGAGGAGATTGAGAAAGTGTTCTCGGCGATGGAGGCGAATTACTCGGCGTGGGTCAACGGCTTCGCGCCACTCGCCGTTGGAGCCGACGTGCCAGCCGCGGTCCGAGAGTTCAGCCGGACCCTGTTCAACATGCGCCCCGATATTTCGCTCTTCGTTTCGCGGGCCGTGTTCAACAGCGACTTGAGGGAGTTTTTGGGCTTTGTCCGGGTACCCTGTTTCATAATCCAGACGACAAAAGACCATTCTGTCCCTGCCTCGGTGGCGAATTACCTGAAAGAGCATCTGGGTGGCCGGAACACCATCGTTATGCTCGAAACGGAGGGCCACTTGCCGCATTTGAGCGCGCCGGGTCTGTTGGCCCGGAGGCTCCGCCATGCTCTTTCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010817 GO:0014070 GO:0016106 GO:0016114 GO:0018130 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1901700 GO:1901701 GO:1902347 GO:1902348 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

268

Amino Acids

29.85

Weight (kDa)

6.71

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	23 - 260	8.6e-16	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	23 - 254	6.6e-13	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03990
fragaria_vesca	FvH4_2g33160
malus_domestica	MD08G1084500.v1.1 MD08G1084800.v1.1 MD15G1070700.v1.1
prunus_persica	Prupe.1G423400_v2.0.a1
pyrus_communis	pycom08g07000 pycom15g06640
rosa_chinensis	RchiOBHm_Chr6g0309501
rosa_laevigata	RLG00000010560
rosa_multiflora	Rmu_co8437415.1_g000001 Rmu_sc0007283.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159350
rosa_rugosa	Rorug06G0372500
rosa_samantha	Rh6AG485800 Rh6BG495200 Rh6CG500200 Rh6DG486100
rosa_wichuraiana	Rw6G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	227, 662
Acc65I	GGTACC	1 cut(s)	625
AccB1I	GGYRCC	1 cut(s)	625
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	4 cut(s)	482, 515, 577, 761
AcoI	YGGCCR	2 cut(s)	286, 706
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	65, 627
AfiI	CCNNNNNNNGG	2 cut(s)	73, 673
AgsI	TTSAA	4 cut(s)	130, 202, 544, 589
AjiI	CACGTC	1 cut(s)	505
AjnI	CCWGG	4 cut(s)	66, 72, 104, 216
AluBI	AGCT	3 cut(s)	29, 340, 352
AluI	AGCT	3 cut(s)	29, 340, 352
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	301
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	6 cut(s)	75, 286, 579, 706, 739, 774
Asp700I	GAANNNNTTC	1 cut(s)	434
Asp718I	GGTACC	1 cut(s)	625
AspLEI	GCGC	7 cut(s)	170, 278, 368, 484, 552, 761, 763
AspS9I	GGNCC	7 cut(s)	70, 76, 517, 534, 579, 739, 775
AsuC2I	CCSGG	5 cut(s)	41, 49, 623, 765, 778
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	3 cut(s)	70, 517, 534
BanI	GGYRCC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	342
BccI	CCATC	2 cut(s)	439, 725
BceAI	ACGGC	3 cut(s)	476, 490, 566
BciT130I	CCWGG	4 cut(s)	68, 74, 106, 218
BcnI	CCSGG	5 cut(s)	41, 49, 623, 765, 778
BcoDI	GTCTC	1 cut(s)	301
BfoI	RGCGCY	1 cut(s)	369
BglI	GCCNNNNNGGC	1 cut(s)	677
BisI	GCNGC	3 cut(s)	331, 513, 749
BlsI	GCNGC	3 cut(s)	332, 514, 750
Bme1390I	CCNGG	9 cut(s)	41, 49, 68, 74, 106, 218, 623, 765, 778
Bme18I	GGWCC	3 cut(s)	70, 517, 534
BmeT110I	CYCGRG	1 cut(s)	335
BmgBI	CACGTC	1 cut(s)	505
BmgT120I	GGNCC	7 cut(s)	70, 76, 517, 534, 579, 739, 775
BmiI	GGNNCC	4 cut(s)	499, 536, 627, 785
BmrFI	CCNGG	9 cut(s)	41, 49, 68, 74, 106, 218, 623, 765, 778
BmsI	GCATC	2 cut(s)	153, 706
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BpuEI	CTTGAG	1 cut(s)	619
BpuMI	CCSGG	5 cut(s)	41, 49, 623, 765, 778
BsaBI	GATNNNNATC	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	6 cut(s)	79, 105, 374, 400, 513, 672
BsaXI	ACNNNNNCTCC	4 cut(s)	281, 311, 489, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 673
Bse1I	ACTGG	1 cut(s)	97
Bse8I	GATNNNNATC	1 cut(s)	311
BseBI	CCWGG	4 cut(s)	68, 74, 106, 218
BseDI	CCNNGG	6 cut(s)	79, 105, 374, 400, 513, 672
BseGI	GGATG	1 cut(s)	354
BseJI	GATNNNNATC	1 cut(s)	311
BseLI	CCNNNNNNNGG	2 cut(s)	73, 673
BseNI	ACTGG	1 cut(s)	97
BsePI	GCGCGC	1 cut(s)	759
BseRI	GAGGAG	1 cut(s)	434
BseYI	CCCAGC	1 cut(s)	5
Bsh1236I	CGCG	4 cut(s)	482, 515, 577, 761
BshFI	GGCC	6 cut(s)	77, 288, 581, 708, 741, 776
BshNI	GGYRCC	1 cut(s)	625
BsiHKAI	GWGCWC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	8 cut(s)	40, 48, 171, 532, 622, 709, 764, 778
BslFI	GGGAC	2 cut(s)	407, 650
BslI	CCNNNNNNNGG	2 cut(s)	73, 673
BsmAI	GTCTC	1 cut(s)	301
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	407, 650
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	6 cut(s)	77, 288, 581, 708, 741, 776
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	306
Bsp19I	CCATGG	1 cut(s)	79
BspANI	GGCC	6 cut(s)	77, 288, 581, 708, 741, 776
BspFNI	CGCG	4 cut(s)	482, 515, 577, 761
BspLI	GGNNCC	4 cut(s)	499, 536, 627, 785
BspQI	GCTCTTC	2 cut(s)	347, 572
BspT107I	GGYRCC	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	6 cut(s)	79, 105, 374, 400, 513, 672
BssHII	GCGCGC	1 cut(s)	759
BssMI	GATC	1 cut(s)	306
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	2 cut(s)	79, 374
Bst2UI	CCWGG	4 cut(s)	68, 74, 106, 218
Bst6I	CTCTTC	2 cut(s)	347, 572
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	4 cut(s)	59, 510, 579, 761
BstDSI	CCRYGG	3 cut(s)	79, 400, 513
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	354
BstFNI	CGCG	4 cut(s)	482, 515, 577, 761
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	7 cut(s)	170, 278, 368, 484, 552, 761, 763
BstKTI	GATC	1 cut(s)	309
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	306
BstMWI	GCNNNNNNNGC	5 cut(s)	174, 449, 488, 497, 677
BstNI	CCWGG	4 cut(s)	68, 74, 106, 218
BstNSI	RCATGY	1 cut(s)	550
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	9 cut(s)	39, 47, 66, 72, 104, 216, 621, 763, 776
BstUI	CGCG	4 cut(s)	482, 515, 577, 761
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuRI	GGCC	6 cut(s)	77, 288, 581, 708, 741, 776
BtgI	CCRYGG	3 cut(s)	79, 400, 513
BtgZI	GCGATG	1 cut(s)	458
BtrI	CACGTC	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	4 cut(s)	59, 510, 579, 761
CaiI	CAGNNNCTG	1 cut(s)	67
CfoI	GCGC	7 cut(s)	170, 278, 368, 484, 552, 761, 763
Cfr13I	GGNCC	7 cut(s)	70, 76, 517, 534, 579, 739, 775
Cfr42I	CCGCGG	1 cut(s)	516
CpoI	CGGWCCG	1 cut(s)	517
CseI	GACGC	3 cut(s)	166, 230, 263
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	64, 626
CspI	CGGWCCG	1 cut(s)	517
CviAII	CATG	4 cut(s)	80, 304, 547, 791
CviQI	GTAC	2 cut(s)	64, 626
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
DrdI	GACNNNNNNGTC	2 cut(s)	227, 662
DseDI	GACNNNNNNGTC	2 cut(s)	227, 662
EaeI	YGGCCR	2 cut(s)	286, 706
Eam1104I	CTCTTC	2 cut(s)	347, 572
EarI	CTCTTC	2 cut(s)	347, 572
EciI	GGCGGA	3 cut(s)	91, 289, 776
Ecl136II	GAGCTC	1 cut(s)	340
Eco130I	CCWWGG	2 cut(s)	79, 374
Eco24I	GRGCYC	1 cut(s)	342
Eco47I	GGWCC	3 cut(s)	70, 517, 534
Eco53kI	GAGCTC	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	335
Eco91I	GGTNACC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	4 cut(s)	66, 72, 104, 216
EcoT14I	CCWWGG	2 cut(s)	79, 374
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	2 cut(s)	79, 374
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	4 cut(s)	83, 307, 550, 794
FaiI	YATR	8 cut(s)	81, 154, 210, 305, 548, 638, 725, 792
FaqI	GGGAC	2 cut(s)	407, 650
FatI	CATG	4 cut(s)	79, 303, 546, 790
FauI	CCCGC	1 cut(s)	570
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	331, 513, 749
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	3 cut(s)	331, 513, 749
GlaI	GCGC	7 cut(s)	169, 277, 367, 483, 551, 760, 762
GluI	GCNGC	3 cut(s)	331, 513, 749
GsaI	CCCAGC	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	6 cut(s)	77, 288, 581, 708, 741, 776
HapII	CCGG	8 cut(s)	40, 48, 171, 532, 622, 709, 764, 778
HgaI	GACGC	3 cut(s)	166, 230, 263
HhaI	GCGC	7 cut(s)	170, 278, 368, 484, 552, 761, 763
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	83, 307, 550, 794
Hin6I	GCGC	7 cut(s)	168, 276, 366, 482, 550, 759, 761
HinP1I	GCGC	7 cut(s)	168, 276, 366, 482, 550, 759, 761
HincII	GTYRAC	3 cut(s)	181, 232, 472
HindII	GTYRAC	3 cut(s)	181, 232, 472
HinfI	GANTC	3 cut(s)	18, 264, 312
HpaII	CCGG	8 cut(s)	40, 48, 171, 532, 622, 709, 764, 778
Hpy166II	GTNNAC	3 cut(s)	181, 232, 472
Hpy188I	TCNGA	4 cut(s)	33, 311, 384, 521
Hpy188III	TCNNGA	2 cut(s)	251, 643
Hpy8I	GTNNAC	3 cut(s)	181, 232, 472
Hpy99I	CGWCG	5 cut(s)	233, 236, 257, 287, 506
HpyAV	CCTTC	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	282, 504
HpyF10VI	GCNNNNNNNGC	5 cut(s)	174, 449, 488, 497, 677
HpySE526I	ACGT	2 cut(s)	282, 504
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	83, 307, 550, 794
HspAI	GCGC	7 cut(s)	168, 276, 366, 482, 550, 759, 761
KpnI	GGTACC	1 cut(s)	629
KspI	CCGCGG	1 cut(s)	516
Kzo9I	GATC	1 cut(s)	306
LguI	GCTCTTC	2 cut(s)	347, 572
LmnI	GCTCC	2 cut(s)	497, 789
LweI	GCATC	2 cut(s)	153, 706
MabI	ACCWGGT	1 cut(s)	66
MaeII	ACGT	2 cut(s)	282, 504
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MboII	GAAGA	4 cut(s)	110, 118, 334, 559
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	2 cut(s)	454, 682
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	475
MroXI	GAANNNNTTC	1 cut(s)	434
MslI	CAYNNNNRTG	2 cut(s)	702, 722
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	8 cut(s)	40, 48, 171, 532, 622, 709, 764, 778
MspR9I	CCNGG	9 cut(s)	41, 49, 68, 74, 106, 218, 623, 765, 778
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	4 cut(s)	68, 74, 106, 218
MvnI	CGCG	4 cut(s)	482, 515, 577, 761
MwoI	GCNNNNNNNGC	5 cut(s)	174, 449, 488, 497, 677
NciI	CCSGG	5 cut(s)	41, 49, 623, 765, 778
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	306
NlaIII	CATG	4 cut(s)	83, 307, 550, 794
NlaIV	GGNNCC	4 cut(s)	499, 536, 627, 785
NmeAIII	GCCGAG	2 cut(s)	419, 440
NspI	RCATGY	1 cut(s)	550
PauI	GCGCGC	1 cut(s)	759
PciSI	GCTCTTC	2 cut(s)	347, 572
PcsI	WCGNNNNNNNCGW	5 cut(s)	153, 228, 291, 408, 726
PctI	GAATGC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	18, 312
PkrI	GCNGC	3 cut(s)	332, 514, 750
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	342
Psp6I	CCWGG	4 cut(s)	66, 72, 104, 216
PspEI	GGTNACC	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	4 cut(s)	66, 72, 104, 216
PspN4I	GGNNCC	4 cut(s)	499, 536, 627, 785
PspPI	GGNCC	7 cut(s)	70, 76, 517, 534, 579, 739, 775
PstNI	CAGNNNCTG	1 cut(s)	67
PteI	GCGCGC	1 cut(s)	759
RsaI	GTAC	2 cut(s)	65, 627
RsaNI	GTAC	2 cut(s)	64, 626
RseI	CAYNNNNRTG	2 cut(s)	702, 722
Rsr2I	CGGWCCG	1 cut(s)	517
RsrII	CGGWCCG	1 cut(s)	517
SacI	GAGCTC	1 cut(s)	342
SacII	CCGCGG	1 cut(s)	516
SalI	GTCGAC	1 cut(s)	230
SapI	GCTCTTC	2 cut(s)	347, 572
SatI	GCNGC	3 cut(s)	331, 513, 749
Sau3AI	GATC	1 cut(s)	306
Sau96I	GGNCC	7 cut(s)	70, 76, 517, 534, 579, 739, 775
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	9 cut(s)	41, 49, 68, 74, 106, 218, 623, 765, 778
SduI	GDGCHC	1 cut(s)	342
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	2 cut(s)	153, 706
Sfr303I	CCGCGG	1 cut(s)	516
SgrBI	CCGCGG	1 cut(s)	516
SgrDI	CGTCGACG	1 cut(s)	230
SinI	GGWCC	3 cut(s)	70, 517, 534
SmiMI	CAYNNNNRTG	2 cut(s)	702, 722
SmlI	CTYRAG	1 cut(s)	598
SmoI	CTYRAG	1 cut(s)	598
Sse9I	AATT	2 cut(s)	454, 682
SstI	GAGCTC	1 cut(s)	342
StyD4I	CCNGG	9 cut(s)	39, 47, 66, 72, 104, 216, 621, 763, 776
StyI	CCWWGG	2 cut(s)	79, 374
TaiI	ACGT	2 cut(s)	285, 507
TaqI	TCGA	5 cut(s)	195, 231, 252, 411, 729
TasI	AATT	2 cut(s)	454, 682
TauI	GCSGC	3 cut(s)	333, 515, 751
TfiI	GAWTC	2 cut(s)	18, 312
TscAI	CASTG	1 cut(s)	97
TspDTI	ATGAA	2 cut(s)	625, 789
TspGWI	ACGGA	3 cut(s)	283, 417, 749
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	3 cut(s)	70, 517, 534
XceI	RCATGY	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.