Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007283.1

Orthogroup ID

OG0012366

Physical Location & Seq

Genomic Coordinates Forward (+)

34959 .. 35787

Gene Structure 829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007283.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ctggtcctagcccatggcttcggcactgaccagtccgcctggggacgcattcttcctttcttcaaaccttactaccgcatcgttctatacgacctcgtttgcgccggaagcgtcaaccccgattacttcgatttcaaccgctataccaacctggaccccttcgtcgacgacttgctcaacattctcgacgctgtgggagtcaaaaagtgcgcctacgtcggccactccgtctccgccatgatcggaatcctcgcctcgattcgccgccccgagctcttctccaagctcatcctcatcggcgcttctccaaggtttctgaacgacagggactaccacggagggttcgagcaggaggagattgagaaattgttctcggcgatggaggcgaattacacggcgtgggtcaacggcttcgcgccactcgccgttggagccgacgtgccagccgcggtccgagagttcagccggaccctgttcaacatgcgccccgatatttcgctcttcgtttcgcgggccgtgttcaacagcgacttgagggagtttttgggctttgtccgggtaccctgtttcataatccagacgacaaaagaccattctgtccctgcctcggtcgcgaattacctgcaagagcatctgggtggccggaacaccatcgttatgctcgaaacggagggccacttgccgcatttgagcgcgccgggtctgttggcccggaggctccgccatgctctttcatcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010817 GO:0014070 GO:0016106 GO:0016114 GO:0018130 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1901700 GO:1901701 GO:1902347 GO:1902348 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

246

Amino Acids

27.48

Weight (kDa)

6.47

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03990
fragaria_vesca	FvH4_2g33160
malus_domestica	MD08G1084500.v1.1 MD08G1084800.v1.1 MD15G1070700.v1.1
prunus_persica	Prupe.1G423400_v2.0.a1
pyrus_communis	pycom08g07000 pycom15g06640
rosa_chinensis	RchiOBHm_Chr6g0309501
rosa_laevigata	RLG00000010560
rosa_multiflora	Rmu_co8437415.1_g000001 Rmu_sc0007283.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159350
rosa_rugosa	Rorug06G0372500
rosa_samantha	Rh6AG485800 Rh6BG495200 Rh6CG500200 Rh6DG486100
rosa_wichuraiana	Rw6G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	161, 596
Acc36I	ACCTGC	1 cut(s)	630
Acc65I	GGTACC	1 cut(s)	559
AccB1I	GGYRCC	1 cut(s)	559
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	5 cut(s)	416, 449, 511, 614, 695
AcoI	YGGCCR	2 cut(s)	220, 640
AdeI	CACNNNGTG	1 cut(s)	399
AfaI	GTAC	1 cut(s)	561
AfiI	CCNNNNNNNGG	1 cut(s)	607
AgsI	TTSAA	4 cut(s)	64, 136, 478, 523
AjiI	CACGTC	1 cut(s)	439
AjnI	CCWGG	2 cut(s)	38, 150
AluBI	AGCT	2 cut(s)	274, 286
AluI	AGCT	2 cut(s)	274, 286
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	1 cut(s)	235
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	5 cut(s)	220, 513, 640, 673, 708
Asp700I	GAANNNNTTC	1 cut(s)	368
Asp718I	GGTACC	1 cut(s)	559
AspLEI	GCGC	7 cut(s)	104, 212, 302, 418, 486, 695, 697
AspS9I	GGNCC	7 cut(s)	4, 154, 451, 468, 513, 673, 709
AsuC2I	CCSGG	3 cut(s)	557, 699, 712
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	4 cut(s)	4, 154, 451, 468
BanI	GGYRCC	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	276
BccI	CCATC	2 cut(s)	373, 659
BceAI	ACGGC	4 cut(s)	410, 411, 424, 500
BcgI	CGANNNNNNTGC	2 cut(s)	604, 638
BciT130I	CCWGG	2 cut(s)	40, 152
BcnI	CCSGG	3 cut(s)	557, 699, 712
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	1 cut(s)	8
BfoI	RGCGCY	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	630
BisI	GCNGC	3 cut(s)	265, 447, 683
BlsI	GCNGC	3 cut(s)	266, 448, 684
Bme1390I	CCNGG	5 cut(s)	40, 152, 557, 699, 712
Bme18I	GGWCC	4 cut(s)	4, 154, 451, 468
BmeT110I	CYCGRG	1 cut(s)	269
BmgBI	CACGTC	1 cut(s)	439
BmgT120I	GGNCC	7 cut(s)	4, 154, 451, 468, 513, 673, 709
BmiI	GGNNCC	5 cut(s)	156, 433, 470, 561, 719
BmrFI	CCNGG	5 cut(s)	40, 152, 557, 699, 712
BmsI	GCATC	2 cut(s)	87, 640
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BpuEI	CTTGAG	1 cut(s)	553
BpuMI	CCSGG	3 cut(s)	557, 699, 712
BsaBI	GATNNNNATC	1 cut(s)	245
BsaJI	CCNNGG	6 cut(s)	13, 39, 308, 334, 447, 606
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 423, 453
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	1 cut(s)	31
Bse8I	GATNNNNATC	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	40, 152
BseDI	CCNNGG	6 cut(s)	13, 39, 308, 334, 447, 606
BseGI	GGATG	1 cut(s)	288
BseJI	GATNNNNATC	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseNI	ACTGG	1 cut(s)	31
BsePI	GCGCGC	1 cut(s)	693
BseRI	GAGGAG	1 cut(s)	368
Bsh1236I	CGCG	5 cut(s)	416, 449, 511, 614, 695
Bsh1285I	CGRYCG	1 cut(s)	612
BshFI	GGCC	5 cut(s)	222, 515, 642, 675, 710
BshNI	GGYRCC	1 cut(s)	559
BsiEI	CGRYCG	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	6 cut(s)	105, 466, 556, 643, 698, 712
BslFI	GGGAC	3 cut(s)	57, 341, 584
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	1 cut(s)	235
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	3 cut(s)	57, 341, 584
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	5 cut(s)	222, 515, 642, 675, 710
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	240
Bsp19I	CCATGG	1 cut(s)	13
Bsp68I	TCGCGA	1 cut(s)	614
BspANI	GGCC	5 cut(s)	222, 515, 642, 675, 710
BspFNI	CGCG	5 cut(s)	416, 449, 511, 614, 695
BspLI	GGNNCC	5 cut(s)	156, 433, 470, 561, 719
BspMI	ACCTGC	1 cut(s)	630
BspQI	GCTCTTC	2 cut(s)	281, 506
BspT107I	GGYRCC	1 cut(s)	559
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	6 cut(s)	13, 39, 308, 334, 447, 606
BssHII	GCGCGC	1 cut(s)	693
BssMI	GATC	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	13, 308
Bst2UI	CCWGG	2 cut(s)	40, 152
Bst6I	CTCTTC	2 cut(s)	281, 506
BstC8I	GCNNGC	3 cut(s)	444, 513, 695
BstDSI	CCRYGG	3 cut(s)	13, 334, 447
BstF5I	GGATG	1 cut(s)	288
BstFNI	CGCG	5 cut(s)	416, 449, 511, 614, 695
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	7 cut(s)	104, 212, 302, 418, 486, 695, 697
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	240
BstMCI	CGRYCG	1 cut(s)	612
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 383, 422, 431, 611
BstNI	CCWGG	2 cut(s)	40, 152
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	5 cut(s)	38, 150, 555, 697, 710
BstUI	CGCG	5 cut(s)	416, 449, 511, 614, 695
BsuRI	GGCC	5 cut(s)	222, 515, 642, 675, 710
BtgI	CCRYGG	3 cut(s)	13, 334, 447
BtgZI	GCGATG	1 cut(s)	392
BtrI	CACGTC	1 cut(s)	439
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	24
BtuMI	TCGCGA	1 cut(s)	614
BveI	ACCTGC	1 cut(s)	630
Cac8I	GCNNGC	3 cut(s)	444, 513, 695
CfoI	GCGC	7 cut(s)	104, 212, 302, 418, 486, 695, 697
Cfr13I	GGNCC	7 cut(s)	4, 154, 451, 468, 513, 673, 709
Cfr42I	CCGCGG	1 cut(s)	450
CpoI	CGGWCCG	1 cut(s)	451
CseI	GACGC	3 cut(s)	54, 100, 197
Csp6I	GTAC	1 cut(s)	560
CspI	CGGWCCG	1 cut(s)	451
CviAII	CATG	4 cut(s)	14, 238, 481, 725
CviQI	GTAC	1 cut(s)	560
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
DraIII	CACNNNGTG	1 cut(s)	399
DrdI	GACNNNNNNGTC	2 cut(s)	161, 596
DseDI	GACNNNNNNGTC	2 cut(s)	161, 596
EaeI	YGGCCR	2 cut(s)	220, 640
Eam1104I	CTCTTC	2 cut(s)	281, 506
EarI	CTCTTC	2 cut(s)	281, 506
EciI	GGCGGA	3 cut(s)	25, 223, 710
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	2 cut(s)	13, 308
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	4 cut(s)	4, 154, 451, 468
Eco53kI	GAGCTC	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	274
EcoRII	CCWGG	2 cut(s)	38, 150
EcoT14I	CCWWGG	2 cut(s)	13, 308
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	2 cut(s)	13, 308
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	4 cut(s)	17, 241, 484, 728
FaiI	YATR	8 cut(s)	15, 88, 144, 239, 482, 572, 659, 726
FaqI	GGGAC	3 cut(s)	57, 341, 584
FatI	CATG	4 cut(s)	13, 237, 480, 724
FauI	CCCGC	1 cut(s)	504
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	3 cut(s)	265, 447, 683
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	265, 447, 683
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	7 cut(s)	103, 211, 301, 417, 485, 694, 696
GluI	GCNGC	3 cut(s)	265, 447, 683
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	5 cut(s)	222, 515, 642, 675, 710
HapII	CCGG	6 cut(s)	105, 466, 556, 643, 698, 712
HgaI	GACGC	3 cut(s)	54, 100, 197
HhaI	GCGC	7 cut(s)	104, 212, 302, 418, 486, 695, 697
Hin1II	CATG	4 cut(s)	17, 241, 484, 728
Hin6I	GCGC	7 cut(s)	102, 210, 300, 416, 484, 693, 695
HinP1I	GCGC	7 cut(s)	102, 210, 300, 416, 484, 693, 695
HincII	GTYRAC	3 cut(s)	115, 166, 406
HindII	GTYRAC	3 cut(s)	115, 166, 406
HinfI	GANTC	3 cut(s)	198, 246, 259
HpaII	CCGG	6 cut(s)	105, 466, 556, 643, 698, 712
Hpy166II	GTNNAC	3 cut(s)	115, 166, 406
Hpy188I	TCNGA	3 cut(s)	245, 318, 455
Hpy188III	TCNNGA	3 cut(s)	185, 577, 613
Hpy8I	GTNNAC	3 cut(s)	115, 166, 406
Hpy99I	CGWCG	5 cut(s)	167, 170, 191, 221, 440
HpyAV	CCTTC	1 cut(s)	169
HpyCH4IV	ACGT	2 cut(s)	216, 438
HpyCH4V	TGCA	1 cut(s)	625
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 383, 422, 431, 611
HpySE526I	ACGT	2 cut(s)	216, 438
Hsp92II	CATG	4 cut(s)	17, 241, 484, 728
HspAI	GCGC	7 cut(s)	102, 210, 300, 416, 484, 693, 695
KpnI	GGTACC	1 cut(s)	563
KspI	CCGCGG	1 cut(s)	450
Kzo9I	GATC	1 cut(s)	240
LguI	GCTCTTC	2 cut(s)	281, 506
LmnI	GCTCC	2 cut(s)	431, 723
LweI	GCATC	2 cut(s)	87, 640
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	2 cut(s)	216, 438
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	4 cut(s)	44, 52, 268, 493
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	3 cut(s)	365, 388, 616
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	368
MslI	CAYNNNNRTG	2 cut(s)	636, 656
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	6 cut(s)	105, 466, 556, 643, 698, 712
MspR9I	CCNGG	5 cut(s)	40, 152, 557, 699, 712
Mva1269I	GAATGC	1 cut(s)	48
MvaI	CCWGG	2 cut(s)	40, 152
MvnI	CGCG	5 cut(s)	416, 449, 511, 614, 695
MwoI	GCNNNNNNNGC	5 cut(s)	108, 383, 422, 431, 611
NciI	CCSGG	3 cut(s)	557, 699, 712
NcoI	CCATGG	1 cut(s)	13
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	4 cut(s)	17, 241, 484, 728
NlaIV	GGNNCC	5 cut(s)	156, 433, 470, 561, 719
NmeAIII	GCCGAG	1 cut(s)	353
NruI	TCGCGA	1 cut(s)	614
NspI	RCATGY	1 cut(s)	484
PauI	GCGCGC	1 cut(s)	693
PciSI	GCTCTTC	2 cut(s)	281, 506
PcsI	WCGNNNNNNNCGW	4 cut(s)	87, 225, 342, 660
PctI	GAATGC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	246, 259
PkrI	GCNGC	3 cut(s)	266, 448, 684
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	276
Psp6I	CCWGG	2 cut(s)	38, 150
PspGI	CCWGG	2 cut(s)	38, 150
PspN4I	GGNNCC	5 cut(s)	156, 433, 470, 561, 719
PspPI	GGNCC	7 cut(s)	4, 154, 451, 468, 513, 673, 709
PteI	GCGCGC	1 cut(s)	693
RruI	TCGCGA	1 cut(s)	614
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
RseI	CAYNNNNRTG	2 cut(s)	636, 656
Rsr2I	CGGWCCG	1 cut(s)	451
RsrII	CGGWCCG	1 cut(s)	451
SacI	GAGCTC	1 cut(s)	276
SacII	CCGCGG	1 cut(s)	450
SalI	GTCGAC	1 cut(s)	164
SapI	GCTCTTC	2 cut(s)	281, 506
SatI	GCNGC	3 cut(s)	265, 447, 683
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	7 cut(s)	4, 154, 451, 468, 513, 673, 709
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	5 cut(s)	40, 152, 557, 699, 712
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	9 cut(s)	70, 96, 153, 219, 276, 288, 314, 441, 624
SfaNI	GCATC	2 cut(s)	87, 640
Sfr303I	CCGCGG	1 cut(s)	450
SgrBI	CCGCGG	1 cut(s)	450
SgrDI	CGTCGACG	1 cut(s)	164
SinI	GGWCC	4 cut(s)	4, 154, 451, 468
SmiMI	CAYNNNNRTG	2 cut(s)	636, 656
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
Sse9I	AATT	3 cut(s)	365, 388, 616
SspMI	CTAG	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	5 cut(s)	38, 150, 555, 697, 710
StyI	CCWWGG	2 cut(s)	13, 308
TaiI	ACGT	2 cut(s)	219, 441
TaqI	TCGA	6 cut(s)	129, 165, 186, 257, 345, 663
TaqII	GACCGA	1 cut(s)	598
TasI	AATT	3 cut(s)	365, 388, 616
TauI	GCSGC	3 cut(s)	267, 449, 685
TfiI	GAWTC	2 cut(s)	246, 259
TscAI	CASTG	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	559, 723
TspGWI	ACGGA	3 cut(s)	217, 351, 683
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	4 cut(s)	4, 154, 451, 468
XceI	RCATGY	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.