Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007300

Physical Location & Seq

Genomic Coordinates Forward (+)

1047640 .. 1049444

Gene Structure 1805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCTGCAACAATGGCGGATTCAGGAAAGGAGATCGGATCCAGATGTCATCACTGCGCAGGCCCTCTTACGAAAAATCTGGAAACCAACGAATGGACTGTGGCTCCGTTTATCAGGGATAGCTTCTCTATGATTGGATCAGCTGTTGGTGGTACTGCAAGTGCTTTCATTGGGTTTCACCATGTAATGCCGATTGTACGCAAGTGGATCAAAGGACCCATGTGGTTGCATTTTCTTGTTGGTGCTCCACCTGTGATAGTTGTTTCATCAGCCTGTGCTGGACTTGCAGGTGGCGCTGTACCGGCTTTAGCACAGCTTGCATCGTCGTCTTATCATGCGGCTGTTCATTCATCTCAGCCACCACAAGGGCAAGATAAGAACCAATTGCACAATTCCTCTACCATTTCTCCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

14.4

Weight (kDa)

8.58

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04040 AT5G18250
fragaria_vesca	FvH4_5g23840
malus_domestica	MD12G1001600.v1.1 MD14G1001500.v1.1
prunus_persica	Prupe.1G559200_v2.0.a1 Prupe.1G559200_v2.0.a1 Prupe.1G559200_v2.0.a1 Prupe.1G559200_v2.0.a1 Prupe.1G559200_v2.0.a1
pyrus_communis	pycom12g00150 pycom49g00100
rosa_chinensis	RchiOBHm_Chr1g0332111 RchiOBHm_Chr1g0332131 RchiOBHm_Chr7g0213231
rosa_laevigata	RLG00000002820
rosa_roxburghii	Rroxscaffold_3G00246150
rosa_rugosa	Rorug07G0140600
rosa_samantha	Rh1AG122300 Rh1CG116900 Rh1DG127900 Rh7AG272100 Rh7BG267800
rosa_wichuraiana	Rw1G009970 Rw7G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	278
Acc16I	TGCGCA	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	278
AccB7I	CCANNNNNTGG	1 cut(s)	93
AciI	CCGC	2 cut(s)	17, 338
AclWI	GGATC	4 cut(s)	33, 46, 145, 215
AfaI	GTAC	3 cut(s)	154, 198, 300
AfiI	CCNNNNNNNGG	2 cut(s)	93, 365
AluBI	AGCT	3 cut(s)	123, 143, 316
AluI	AGCT	3 cut(s)	123, 143, 316
Alw21I	GWGCWC	1 cut(s)	247
AlwI	GGATC	4 cut(s)	33, 46, 145, 215
AoxI	GGCC	1 cut(s)	61
AspLEI	GCGC	2 cut(s)	59, 296
AspS9I	GGNCC	2 cut(s)	62, 215
AsuHPI	GGTGA	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	247
BfoI	RGCGCY	1 cut(s)	297
BfuAI	ACCTGC	1 cut(s)	278
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	62, 215
BmiI	GGNNCC	3 cut(s)	40, 105, 217
BmsI	GCATC	1 cut(s)	329
BsaXI	ACNNNNNCTCC	3 cut(s)	88, 118, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 365
Bse118I	RCCGGY	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	93, 365
BseMII	CTCAG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	2 cut(s)	93, 365
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	4 cut(s)	33, 38, 137, 207
BspACI	CCGC	2 cut(s)	17, 338
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	367
BspLI	GGNNCC	3 cut(s)	40, 105, 217
BspMI	ACCTGC	1 cut(s)	278
BspPI	GGATC	4 cut(s)	33, 46, 145, 215
BsrFI	RCCGGY	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	301
BssMI	GATC	4 cut(s)	33, 38, 137, 207
Bst4CI	ACNGT	1 cut(s)	100
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	61, 318
BstDEI	CTNAG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	59, 296
BstKTI	GATC	4 cut(s)	36, 41, 140, 210
BstMBI	GATC	4 cut(s)	33, 38, 137, 207
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 284, 293, 302, 317
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	63
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	52
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	61, 318
CfoI	GCGC	2 cut(s)	59, 296
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	62, 215
Csp6I	GTAC	3 cut(s)	153, 197, 299
CviAII	CATG	3 cut(s)	182, 220, 335
CviJI	RGCY	9 cut(s)	63, 104, 123, 143, 272, 305, 316, 341, 358
CviKI_1	RGCY	9 cut(s)	63, 104, 123, 143, 272, 305, 316, 341, 358
CviQI	GTAC	3 cut(s)	153, 197, 299
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	4 cut(s)	35, 40, 139, 209
DpnII	GATC	4 cut(s)	33, 38, 137, 207
EciI	GGCGGA	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	215
EcoO109I	RGGNCCY	2 cut(s)	62, 215
FaeI	CATG	3 cut(s)	185, 223, 338
FaiI	YATR	4 cut(s)	131, 183, 221, 336
FatI	CATG	3 cut(s)	181, 219, 334
Fnu4HI	GCNGC	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	339
FspI	TGCGCA	1 cut(s)	58
GlaI	GCGC	2 cut(s)	58, 295
GluI	GCNGC	1 cut(s)	339
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	302
HhaI	GCGC	2 cut(s)	59, 296
Hin1II	CATG	3 cut(s)	185, 223, 338
Hin6I	GCGC	2 cut(s)	57, 294
HinP1I	GCGC	2 cut(s)	57, 294
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	1 cut(s)	170
Hpy188I	TCNGA	1 cut(s)	38
Hpy188III	TCNNGA	3 cut(s)	24, 42, 80
Hpy99I	CGWCG	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	6 cut(s)	8, 158, 229, 287, 320, 388
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 284, 293, 302, 317
HpyF3I	CTNAG	1 cut(s)	354
Hsp92II	CATG	3 cut(s)	185, 223, 338
HspAI	GCGC	2 cut(s)	57, 294
Kzo9I	GATC	4 cut(s)	33, 38, 137, 207
LmnI	GCTCC	2 cut(s)	109, 250
LweI	GCATC	1 cut(s)	329
MalI	GATC	4 cut(s)	35, 40, 139, 209
MboI	GATC	4 cut(s)	33, 38, 137, 207
MfeI	CAATTG	1 cut(s)	383
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	2 cut(s)	383, 391
MnlI	CCTC	2 cut(s)	75, 406
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	302
MunI	CAATTG	1 cut(s)	383
MwoI	GCNNNNNNNGC	5 cut(s)	14, 284, 293, 302, 317
NdeII	GATC	4 cut(s)	33, 38, 137, 207
NlaIII	CATG	3 cut(s)	185, 223, 338
NlaIV	GGNNCC	3 cut(s)	40, 105, 217
NsbI	TGCGCA	1 cut(s)	58
PaqCI	CACCTGC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	40, 105, 217
PspPI	GGNCC	2 cut(s)	62, 215
PspPPI	RGGWCCY	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	3 cut(s)	154, 198, 300
RsaNI	GTAC	3 cut(s)	153, 197, 299
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	4 cut(s)	33, 38, 137, 207
Sau96I	GGNCC	2 cut(s)	62, 215
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	5 cut(s)	125, 145, 253, 292, 318
SfaNI	GCATC	1 cut(s)	329
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	383, 391
SsiI	CCGC	2 cut(s)	17, 338
TaaI	ACNGT	1 cut(s)	100
TasI	AATT	2 cut(s)	383, 391
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	20
TscAI	CASTG	1 cut(s)	59
TspDTI	ATGAA	4 cut(s)	157, 255, 335, 339
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	59
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.