Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007300

Physical Location & Seq

Genomic Coordinates Forward (+)

39243003 .. 39251499

Gene Structure 8497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00246150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCTGGTTCCACTCCTAAAAATACCATTAGATGTCATCATTGCGCCGGTCCTCTTTCTAAGGAGATGGAAACTAGTGCATGGACAGTTCCACCTCTTATCAGGGATAGCTTCTCTATGATTGGCTCTGCTGTTGGTGGTACAGTAAGTGCTTTTTATGGATTCAATTATGACGCAATGGTGGGCGATATGAGACTTTTAAGGATAGATGATGTTATGATGTCTAACATTTGGAGTTGTATTAGCTGGGGGAGGAGTGGGGGTGGTGTAGAATTAGTGATGCCTATTGTTCAGAGACGGGCTCCTCCCGTCATTGTGTTCTCTTCAGCTTGTGCTGGTTTGGCAGGTGGGGCAATTCCAGCTGTGGCCCAACTTGCTTCGTCATCTTATCATGCAGCTGTCTCATCCTCCTCGTTGCCTCCTACGACTTCTCAAGATGAGAAGATGCACGAGTCCAGAAATTCCTCTACTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

16.64

Weight (kDa)

6.89

Isoelectric Point (pI)

65.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04040 AT5G18250
fragaria_vesca	FvH4_5g23840
malus_domestica	MD12G1001600.v1.1 MD14G1001500.v1.1
prunus_persica	Prupe.1G559200_v2.0.a1 Prupe.1G559200_v2.0.a1 Prupe.1G559200_v2.0.a1 Prupe.1G559200_v2.0.a1 Prupe.1G559200_v2.0.a1
pyrus_communis	pycom12g00150 pycom49g00100
rosa_chinensis	RchiOBHm_Chr1g0332111 RchiOBHm_Chr1g0332131 RchiOBHm_Chr7g0213231
rosa_laevigata	RLG00000002820
rosa_roxburghii	Rroxscaffold_3G00246150
rosa_rugosa	Rorug07G0140600
rosa_samantha	Rh1AG122300 Rh1CG116900 Rh1DG127900 Rh7AG272100 Rh7BG267800
rosa_wichuraiana	Rw1G009970 Rw7G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	335
Acc36I	ACCTGC	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	166
AhlI	ACTAGT	1 cut(s)	74
AluBI	AGCT	5 cut(s)	111, 246, 329, 362, 398
AluI	AGCT	5 cut(s)	111, 246, 329, 362, 398
Alw26I	GTCTC	3 cut(s)	187, 289, 406
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	460
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	50, 367
AvaII	GGWCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	304
BauI	CACGAG	1 cut(s)	449
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	1 cut(s)	61
BcoDI	GTCTC	3 cut(s)	187, 289, 406
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	335
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	50, 367
BmiI	GGNNCC	2 cut(s)	10, 303
BmsI	GCATC	2 cut(s)	270, 435
BplI	GAGNNNNNCTC	2 cut(s)	286, 318
BpuEI	CTTGAG	1 cut(s)	417
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bse118I	RCCGGY	1 cut(s)	47
Bse3DI	GCAATG	2 cut(s)	40, 183
BseGI	GGATG	1 cut(s)	404
BseMI	GCAATG	2 cut(s)	40, 183
BseRI	GAGGAG	3 cut(s)	268, 294, 400
BseXI	GCAGC	1 cut(s)	407
BseYI	CCCAGC	1 cut(s)	246
BshFI	GGCC	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	48
BsmAI	GTCTC	3 cut(s)	187, 289, 406
BsmBI	CGTCTC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	304
BspANI	GGCC	1 cut(s)	368
BspLI	GGNNCC	2 cut(s)	10, 303
BspMI	ACCTGC	1 cut(s)	335
BsrDI	GCAATG	2 cut(s)	40, 183
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssSI	CACGAG	1 cut(s)	449
Bst2BI	CACGAG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	88, 145
Bst6I	CTCTTC	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	47
BstMAI	GTCTC	3 cut(s)	187, 289, 406
BstMWI	GCNNNNNNNGC	4 cut(s)	341, 350, 359, 374
BstV1I	GCAGC	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	404
BveI	ACCTGC	1 cut(s)	335
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	50, 367
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	2 cut(s)	81, 392
CviJI	RGCY	9 cut(s)	5, 111, 126, 246, 302, 329, 362, 368, 398
CviKI_1	RGCY	9 cut(s)	5, 111, 126, 246, 302, 329, 362, 368, 398
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	289
FaeI	CATG	2 cut(s)	84, 395
FaiI	YATR	7 cut(s)	82, 119, 159, 171, 191, 218, 393
FatI	CATG	2 cut(s)	80, 391
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	1 cut(s)	391
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	396
GsaI	CCCAGC	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	84, 395
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	162, 452
HpaII	CCGG	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	2 cut(s)	434, 456
HpyCH4III	ACNGT	2 cut(s)	88, 145
HpyCH4V	TGCA	3 cut(s)	80, 395, 448
HpyF10VI	GCNNNNNNNGC	4 cut(s)	341, 350, 359, 374
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	84, 395
HspAI	GCGC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	7 cut(s)	61, 88, 232, 321, 330, 372, 469
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	2 cut(s)	270, 435
MaeI	CTAG	1 cut(s)	75
MboII	GAAGA	2 cut(s)	315, 454
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	4 cut(s)	166, 272, 354, 460
MlyI	GAGTC	1 cut(s)	461
MnlI	CCTC	8 cut(s)	63, 105, 246, 315, 418, 421, 429, 475
MseI	TTAA	1 cut(s)	200
MspA1I	CMGCKG	2 cut(s)	362, 398
MspI	CCGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	4 cut(s)	341, 350, 359, 374
NlaIII	CATG	2 cut(s)	84, 395
NlaIV	GGNNCC	2 cut(s)	10, 303
PaqCI	CACCTGC	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	10, 303
PspPI	GGNCC	2 cut(s)	50, 367
PvuII	CAGCTG	2 cut(s)	362, 398
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	1 cut(s)	396
Sau96I	GGNCC	2 cut(s)	50, 367
SchI	GAGTC	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	7 cut(s)	97, 113, 248, 331, 349, 364, 400
SfaNI	GCATC	2 cut(s)	270, 435
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
SpeI	ACTAGT	1 cut(s)	74
Sse9I	AATT	4 cut(s)	166, 272, 354, 460
SspMI	CTAG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	88, 145
TasI	AATT	4 cut(s)	166, 272, 354, 460
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TseI	GCWGC	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	460
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.