Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007300

Physical Location & Seq

Genomic Coordinates Forward (+)

6033484 .. 6035546

Gene Structure 2063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGACGGATTCTGGGCATGATATTGAAATCAGATGCCATCACTGCGCAGGCCCTCTTACCAGAAATTTGGAAACCAGTAAATGGACTGTTGATCCGTTCATCAGGGATAGCTTTTCTATGATTGGATCAGCTGTTGGAGGTACTGCAAGTGCATTCATTGGATTTAACCATGCAATGCCAATTGTACGCAAGTGGATCAAAGGACCCATGTGGTTACATTTTCTTGTTGGGGCACCACCTGTTATAGTTCTTTCATCAGCATGTGCTGGACTAGCAGGTGGCACTGTACCGGCACTGGCACAGCTCGCTTCATCTTCATACCGAGCTGCAGTCCATTCGTCTCAGCCACCACAAGCACAAAAGGATAACAAAATGCAGAAGTCTACGACTTCTCCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.13

Weight (kDa)

9.26

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04040 AT5G18250
fragaria_vesca	FvH4_5g23840
malus_domestica	MD12G1001600.v1.1 MD14G1001500.v1.1
prunus_persica	Prupe.1G559200_v2.0.a1 Prupe.1G559200_v2.0.a1 Prupe.1G559200_v2.0.a1 Prupe.1G559200_v2.0.a1 Prupe.1G559200_v2.0.a1
pyrus_communis	pycom12g00150 pycom49g00100
rosa_chinensis	RchiOBHm_Chr1g0332111 RchiOBHm_Chr1g0332131 RchiOBHm_Chr7g0213231
rosa_laevigata	RLG00000002820
rosa_roxburghii	Rroxscaffold_3G00246150
rosa_rugosa	Rorug07G0140600
rosa_samantha	Rh1AG122300 Rh1CG116900 Rh1DG127900 Rh7AG272100 Rh7BG267800
rosa_wichuraiana	Rw1G009970 Rw7G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	266
Acc16I	TGCGCA	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	232
AccB7I	CCANNNNNTGG	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	383
AclWI	GGATC	3 cut(s)	86, 133, 203
AcsI	RAATTY	1 cut(s)	64
AfaI	GTAC	3 cut(s)	142, 186, 288
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	4 cut(s)	111, 131, 304, 326
AluI	AGCT	4 cut(s)	111, 131, 304, 326
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	3 cut(s)	86, 133, 203
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	64
ArsI	GACNNNNNNTTYG	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	50, 203
AvaII	GGWCC	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	45
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	50, 203
BmiI	GGNNCC	2 cut(s)	205, 234
BmsI	GCATC	1 cut(s)	23
BsaXI	ACNNNNNCTCC	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	1 cut(s)	289
Bse1I	ACTGG	2 cut(s)	75, 300
Bse3DI	GCAATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	2 cut(s)	75, 300
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	313
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	345
BsmBI	CGTCTC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	3 cut(s)	91, 125, 195
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	205, 234
BspMAI	CTGCAG	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	3 cut(s)	86, 133, 203
BspT107I	GGYRCC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	75, 300
BssAI	RCCGGY	1 cut(s)	289
BssMI	GATC	3 cut(s)	91, 125, 195
Bst4CI	ACNGT	2 cut(s)	88, 286
BstC8I	GCNNGC	2 cut(s)	49, 306
BstDEI	CTNAG	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	94, 128, 198
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	3 cut(s)	91, 125, 195
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 272, 305
BstNSI	RCATGY	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	313
BstXI	CCANNNNNNTGG	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	51
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	3 cut(s)	40, 282, 293
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	2 cut(s)	49, 306
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	289
Cfr13I	GGNCC	2 cut(s)	50, 203
Csp6I	GTAC	3 cut(s)	141, 185, 287
CviAII	CATG	4 cut(s)	17, 170, 208, 261
CviJI	RGCY	6 cut(s)	51, 111, 131, 304, 326, 346
CviKI_1	RGCY	6 cut(s)	51, 111, 131, 304, 326, 346
CviQI	GTAC	3 cut(s)	141, 185, 287
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	3 cut(s)	93, 127, 197
DpnII	GATC	3 cut(s)	91, 125, 195
Eco47I	GGWCC	1 cut(s)	203
EcoO109I	RGGNCCY	2 cut(s)	50, 203
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	4 cut(s)	20, 173, 211, 264
FaiI	YATR	7 cut(s)	18, 119, 171, 209, 245, 262, 319
FatI	CATG	4 cut(s)	16, 169, 207, 260
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	272
FspI	TGCGCA	1 cut(s)	46
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	290
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	4 cut(s)	20, 173, 211, 264
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	384
HpyCH4III	ACNGT	2 cut(s)	88, 286
HpyCH4V	TGCA	5 cut(s)	146, 152, 173, 329, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 272, 305
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	4 cut(s)	20, 173, 211, 264
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	91, 125, 195
LpnPI	CCDG	9 cut(s)	33, 73, 88, 88, 252, 252, 261, 281, 303
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	3 cut(s)	93, 127, 197
MboI	GATC	3 cut(s)	91, 125, 195
MboII	GAAGA	1 cut(s)	306
MfeI	CAATTG	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	2 cut(s)	64, 180
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	2 cut(s)	63, 131
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	259
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	152
MwoI	GCNNNNNNNGC	3 cut(s)	42, 272, 305
NdeII	GATC	3 cut(s)	91, 125, 195
NlaIII	CATG	4 cut(s)	20, 173, 211, 264
NlaIV	GGNNCC	2 cut(s)	205, 234
NsbI	TGCGCA	1 cut(s)	46
NspI	RCATGY	1 cut(s)	264
PaqCI	CACCTGC	1 cut(s)	266
PctI	GAATGC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	205, 234
PspPI	GGNCC	2 cut(s)	50, 203
PspPPI	RGGWCCY	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	3 cut(s)	142, 186, 288
RsaNI	GTAC	3 cut(s)	141, 185, 287
RseI	CAYNNNNRTG	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	3 cut(s)	91, 125, 195
Sau96I	GGNCC	2 cut(s)	50, 203
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	7 cut(s)	113, 133, 142, 241, 280, 306, 328
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	259
Sse9I	AATT	2 cut(s)	64, 180
SspMI	CTAG	1 cut(s)	272
TaaI	ACNGT	2 cut(s)	88, 286
TasI	AATT	2 cut(s)	64, 180
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	3 cut(s)	47, 289, 300
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	5 cut(s)	88, 145, 243, 300, 306
TspGWI	ACGGA	2 cut(s)	20, 84
TspRI	CASTG	3 cut(s)	47, 289, 300
Van91I	CCANNNNNTGG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	264
XmiI	GTMKAC	1 cut(s)	383
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.