RLG00000002820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007300
Physical Location & Seq
Forward (+)
40336637 .. 40340530
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002820

Sequence Viewer

Length: 408 bp
ATGGCTGGTTCCACTCCTAAAAATACCATTAGATGTCATCATTGTGCTGGTCCTCTTTCTAAGGAGATGGAAACTAGTGCATGGACAGTTCCACCTCTTATCAGGGATAGCTTCTCTATGATTGGCTCTGCTGTTGGTGGTACAGTAAGTGCTTTTTATGGATTCAATTATGTGATGCCTATTGTTCAGAGACGGGTAAAAGGACCTATGTGGTTACATTTTTTCATTGGTGCTCCTCCCGTCATTGTATTCTCTTCAGCTTGTGCTGGTTTGGCCGGTGGTGCAATTCCAGCTGTGGCCCAACTTGCTTCGTCATCTTATCATGCAGCTGTCTCATCCTCCTCGTTGCCTCCTGCGACTTCTCAAGATGAGAAGATGCACGAGTCCAGAAATTCCTCTACTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.17

Weight (kDa)

8.96

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 1 cut(s) 166
AhlI ACTAGT 1 cut(s) 74
AluBI AGCT 4 cut(s) 111, 260, 293, 329
AluI AGCT 4 cut(s) 111, 260, 293, 329
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 184, 337
AoxI GGCC 2 cut(s) 273, 297
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 391
AspS9I GGNCC 3 cut(s) 50, 203, 298
AvaII GGWCC 2 cut(s) 50, 203
BauI CACGAG 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 338
BccI CCATC 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 184, 337
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
Bme18I GGWCC 2 cut(s) 50, 203
BmgT120I GGNCC 3 cut(s) 50, 203, 298
BmiI GGNNCC 1 cut(s) 10
BmsI GCATC 2 cut(s) 165, 366
BpuEI CTTGAG 1 cut(s) 348
Bse118I RCCGGY 1 cut(s) 275
BseGI GGATG 1 cut(s) 335
BseRI GAGGAG 2 cut(s) 225, 331
BseXI GCAGC 1 cut(s) 338
BshFI GGCC 2 cut(s) 275, 299
BsiHKAI GWGCWC 1 cut(s) 235
BsiSI CCGG 1 cut(s) 276
BsmAI GTCTC 2 cut(s) 184, 337
BsmBI CGTCTC 1 cut(s) 184
BsnI GGCC 2 cut(s) 275, 299
Bsp1286I GDGCHC 1 cut(s) 235
BspANI GGCC 2 cut(s) 275, 299
BspLI GGNNCC 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 275
BssSI CACGAG 1 cut(s) 380
Bst2BI CACGAG 1 cut(s) 380
Bst4CI ACNGT 2 cut(s) 88, 145
Bst6I CTCTTC 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 335
BstMAI GTCTC 2 cut(s) 184, 337
BstMWI GCNNNNNNNGC 4 cut(s) 272, 281, 290, 305
BstV1I GCAGC 1 cut(s) 338
BsuRI GGCC 2 cut(s) 275, 299
BtsCI GGATG 1 cut(s) 335
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 3 cut(s) 50, 203, 298
Csp6I GTAC 1 cut(s) 141
CviAII CATG 2 cut(s) 81, 323
CviJI RGCY 8 cut(s) 5, 111, 126, 260, 275, 293, 299, 329
CviKI_1 RGCY 8 cut(s) 5, 111, 126, 260, 275, 293, 299, 329
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 60
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 50, 203
Eco57I CTGAAG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 203
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 2 cut(s) 84, 326
FaiI YATR 6 cut(s) 82, 119, 159, 171, 209, 324
FatI CATG 2 cut(s) 80, 322
Fnu4HI GCNGC 1 cut(s) 327
FokI GGATG 1 cut(s) 322
Fsp4HI GCNGC 1 cut(s) 327
FspBI CTAG 1 cut(s) 75
GluI GCNGC 1 cut(s) 327
HaeIII GGCC 2 cut(s) 275, 299
HapII CCGG 1 cut(s) 276
Hin1II CATG 2 cut(s) 84, 326
HinfI GANTC 2 cut(s) 162, 383
HpaII CCGG 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 2 cut(s) 365, 387
HpyCH4III ACNGT 2 cut(s) 88, 145
HpyCH4V TGCA 4 cut(s) 80, 284, 326, 379
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 281, 290, 305
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 2 cut(s) 84, 326
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 7 cut(s) 33, 88, 252, 289, 303, 366, 400
Lsp1109I GCAGC 1 cut(s) 338
LweI GCATC 2 cut(s) 165, 366
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 213
MboII GAAGA 2 cut(s) 246, 385
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 3 cut(s) 166, 285, 391
MlyI GAGTC 1 cut(s) 392
MnlI CCTC 7 cut(s) 63, 105, 246, 349, 352, 360, 406
MslI CAYNNNNRTG 1 cut(s) 42
MspA1I CMGCKG 2 cut(s) 293, 329
MspI CCGG 1 cut(s) 276
MwoI GCNNNNNNNGC 4 cut(s) 272, 281, 290, 305
NlaIII CATG 2 cut(s) 84, 326
NlaIV GGNNCC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 1 cut(s) 328
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
PpuMI RGGWCCY 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 3 cut(s) 50, 203, 298
PspPPI RGGWCCY 1 cut(s) 203
PvuII CAGCTG 2 cut(s) 293, 329
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 42
SatI GCNGC 1 cut(s) 327
Sau96I GGNCC 3 cut(s) 50, 203, 298
SchI GAGTC 1 cut(s) 392
SduI GDGCHC 1 cut(s) 235
SetI ASST 6 cut(s) 97, 113, 208, 262, 295, 331
SfaNI GCATC 2 cut(s) 165, 366
SinI GGWCC 2 cut(s) 50, 203
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 363
SmoI CTYRAG 1 cut(s) 363
SpeI ACTAGT 1 cut(s) 74
Sse9I AATT 3 cut(s) 166, 285, 391
SspMI CTAG 1 cut(s) 75
TaaI ACNGT 2 cut(s) 88, 145
TasI AATT 3 cut(s) 166, 285, 391
TfiI GAWTC 1 cut(s) 162
TseI GCWGC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 214
VpaK11BI GGWCC 2 cut(s) 50, 203
XapI RAATTY 1 cut(s) 391
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.