AT3G05000

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010961
Physical Location & Seq
Reverse (-)
1387175 .. 1388831
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05000.1

Sequence Viewer

Length: 522 bp
ATGGGGAGAGAAGTGGCGGAGAGCTGTGTAGACACTATGTTAATGGAGATGGTGGCGATGTACAGTGGCCGATTCTATGCTAACAAGCCGGAACTCGCCGCTCGGAGGATCGAGGCCATTGGTTATCAGGTCGGCCACCAGCTCTCCGAGAGGTACACTATGGAAAGACCAAGGTTCAGTGACCATCTAGAGGCAATCAAGTTTATCTGCAAAGACTTCTGGTCTGAGGTCTTCAAGAAGCAGATTGATAATTTAAAGACAAATCACCGGGGTACTTTTGTATTACAAGACAACAAGTTCCGGTGGTTGTCTCGTGTCTCAATTGACCCTTCATCTGAGAATGAAACCCAAGATCCTTCTACTCCAGGGGAAAGCAAAGCTGCACAAGCGGTGAGCATGTACCTCTATTTCCCGTGTGGAATCATTAGAGGTGTCCTCTCCAACTTGGGGATACCTTGTGCTGTCTCTGCAGATATATCAAGCCTTCCCACATGCTCTTTCGTGATTCGGGTCAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

173

Amino Acids

19.57

Weight (kDa)

7.63

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 11 - 172 7.7e-43 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05000
fragaria_vesca FvH4_6g04260
malus_domestica MD00G1052700.v1.1 MD12G1229300.v1.1 MD12G1230100.v1.1
prunus_persica Prupe.6G334800_v2.0.a1
pyrus_communis pycom04g18990 pycom12g21390
rosa_chinensis RchiOBHm_Chr3g0452951 RchiOBHm_Chr5g0055691
rosa_laevigata RLG00000025559
rosa_multiflora Rmu_sc0005888.1_g000018
rosa_roxburghii Rroxscaffold_6G00429950
rosa_rugosa Rorug02G0643800 Rorug05G0294600
rosa_samantha Rh3AG046800 Rh3BG049200 Rh3CG047900 Rh3DG048800
rosa_wichuraiana Rw3G003670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 30
AciI CCGC 3 cut(s) 17, 99, 389
AclWI GGATC 2 cut(s) 116, 347
AcoI YGGCCR 2 cut(s) 67, 133
AfaI GTAC 4 cut(s) 62, 155, 274, 401
AfiI CCNNNNNNNGG 3 cut(s) 105, 190, 447
AgsI TTSAA 1 cut(s) 235
AhdI GACNNNNNGTC 1 cut(s) 220
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 3 cut(s) 24, 142, 380
AluI AGCT 3 cut(s) 24, 142, 380
Alw26I GTCTC 3 cut(s) 315, 322, 469
AlwI GGATC 2 cut(s) 116, 347
AoxI GGCC 3 cut(s) 67, 114, 133
ApeKI GCWGC 1 cut(s) 380
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 257, 403
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BauI CACGAG 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 367
BccI CCATC 2 cut(s) 43, 192
BciT130I CCWGG 1 cut(s) 366
BciVI GTATCC 1 cut(s) 444
BcnI CCSGG 1 cut(s) 269
BcoDI GTCTC 3 cut(s) 315, 322, 469
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 468
BfuI GTATCC 1 cut(s) 444
BisI GCNGC 2 cut(s) 99, 381
BlsI GCNGC 2 cut(s) 100, 382
Bme1390I CCNGG 2 cut(s) 269, 366
BmeRI GACNNNNNGTC 1 cut(s) 220
BmrFI CCNGG 2 cut(s) 269, 366
BpiI GAAGAC 1 cut(s) 223
BplI GAGNNNNNCTC 2 cut(s) 420, 452
BpmI CTGGAG 1 cut(s) 348
BpuMI CCSGG 1 cut(s) 269
BsaJI CCNNGG 3 cut(s) 170, 268, 365
BsaWI WCCGGW 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 190, 447
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 3 cut(s) 170, 268, 365
BseLI CCNNNNNNNGG 3 cut(s) 105, 190, 447
BseMII CTCAG 2 cut(s) 216, 327
BseXI GCAGC 1 cut(s) 367
BsgI GTGCAG 1 cut(s) 366
BshFI GGCC 3 cut(s) 69, 116, 135
BsiSI CCGG 3 cut(s) 89, 268, 301
BslI CCNNNNNNNGG 3 cut(s) 105, 190, 447
BsmAI GTCTC 3 cut(s) 315, 322, 469
BsnI GGCC 3 cut(s) 69, 116, 135
Bsp1407I TGTACA 1 cut(s) 60
Bsp143I GATC 2 cut(s) 108, 352
BspACI CCGC 3 cut(s) 17, 99, 389
BspANI GGCC 3 cut(s) 69, 116, 135
BspCNI CTCAG 2 cut(s) 217, 328
BspMAI CTGCAG 1 cut(s) 472
BspPI GGATC 2 cut(s) 116, 347
BsrBI CCGCTC 1 cut(s) 101
BsrGI TGTACA 1 cut(s) 60
BssECI CCNNGG 3 cut(s) 170, 268, 365
BssMI GATC 2 cut(s) 108, 352
BssSI CACGAG 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 65
BstAUI TGTACA 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 225, 336
BstKTI GATC 2 cut(s) 111, 355
BstMAI GTCTC 3 cut(s) 315, 322, 469
BstMBI GATC 2 cut(s) 108, 352
BstMWI GCNNNNNNNGC 2 cut(s) 386, 467
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 2 cut(s) 400, 495
BstSCI CCNGG 2 cut(s) 267, 364
BstSFI CTRYAG 1 cut(s) 468
BstV1I GCAGC 1 cut(s) 367
BstV2I GAAGAC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 3 cut(s) 69, 116, 135
BtgZI GCGATG 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 70, 184
Csp6I GTAC 4 cut(s) 61, 154, 273, 400
CviAII CATG 2 cut(s) 397, 492
CviJI RGCY 9 cut(s) 24, 69, 88, 116, 135, 142, 380, 483, 518
CviKI_1 RGCY 9 cut(s) 24, 69, 88, 116, 135, 142, 380, 483, 518
CviQI GTAC 4 cut(s) 61, 154, 273, 400
DdeI CTNAG 2 cut(s) 225, 336
DpnI GATC 2 cut(s) 110, 354
DpnII GATC 2 cut(s) 108, 352
DraI TTTAAA 1 cut(s) 255
DriI GACNNNNNGTC 1 cut(s) 220
EaeI YGGCCR 2 cut(s) 67, 133
Eam1105I GACNNNNNGTC 1 cut(s) 220
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 2 cut(s) 400, 495
FaiI YATR 6 cut(s) 38, 78, 161, 398, 476, 493
FatI CATG 2 cut(s) 396, 491
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 99, 381
Fsp4HI GCNGC 2 cut(s) 99, 381
FspBI CTAG 1 cut(s) 188
GluI GCNGC 2 cut(s) 99, 381
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 3 cut(s) 69, 116, 135
HapII CCGG 3 cut(s) 89, 268, 301
Hin1II CATG 2 cut(s) 400, 495
HinfI GANTC 3 cut(s) 72, 420, 505
HpaII CCGG 3 cut(s) 89, 268, 301
HphI GGTGA 2 cut(s) 257, 403
Hpy166II GTNNAC 2 cut(s) 31, 156
Hpy188I TCNGA 4 cut(s) 105, 148, 226, 337
Hpy188III TCNNGA 3 cut(s) 188, 235, 502
Hpy8I GTNNAC 2 cut(s) 31, 156
HpyAV CCTTC 3 cut(s) 339, 366, 494
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 3 cut(s) 210, 383, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 467
HpyF3I CTNAG 2 cut(s) 225, 336
Hsp92II CATG 2 cut(s) 400, 495
Kzo9I GATC 2 cut(s) 108, 352
LpnPI CCDG 8 cut(s) 102, 113, 152, 205, 281, 314, 351, 378
Lsp1109I GCAGC 1 cut(s) 367
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 110, 354
MbiI CCGCTC 1 cut(s) 101
MboI GATC 2 cut(s) 108, 352
MboII GAAGA 1 cut(s) 223
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 352
MluCI AATT 2 cut(s) 250, 321
MmeI TCCRAC 1 cut(s) 465
MnlI CCTC 8 cut(s) 99, 106, 144, 184, 220, 413, 422, 446
MseI TTAA 2 cut(s) 41, 254
MspI CCGG 3 cut(s) 89, 268, 301
MspR9I CCNGG 2 cut(s) 269, 366
MunI CAATTG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 366
MwoI GCNNNNNNNGC 2 cut(s) 386, 467
NciI CCSGG 1 cut(s) 269
NdeII GATC 2 cut(s) 108, 352
NlaIII CATG 2 cut(s) 400, 495
NmuCI GTSAC 1 cut(s) 179
NspI RCATGY 2 cut(s) 400, 495
PfeI GAWTC 3 cut(s) 72, 420, 505
PkrI GCNGC 2 cut(s) 100, 382
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PstI CTGCAG 1 cut(s) 472
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 4 cut(s) 62, 155, 274, 401
RsaNI GTAC 4 cut(s) 61, 154, 273, 400
SaqAI TTAA 2 cut(s) 41, 254
SatI GCNGC 2 cut(s) 99, 381
Sau3AI GATC 2 cut(s) 108, 352
ScrFI CCNGG 2 cut(s) 269, 366
SfcI CTRYAG 1 cut(s) 468
Sse9I AATT 2 cut(s) 250, 321
SsiI CCGC 3 cut(s) 17, 99, 389
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 267, 364
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 111
TasI AATT 2 cut(s) 250, 321
TatI WGTACW 1 cut(s) 60
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 3 cut(s) 72, 420, 505
Tru1I TTAA 2 cut(s) 41, 254
Tru9I TTAA 2 cut(s) 41, 254
TscAI CASTG 2 cut(s) 70, 184
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 321, 357
TspRI CASTG 2 cut(s) 70, 184
XbaI TCTAGA 1 cut(s) 187
XceI RCATGY 2 cut(s) 400, 495
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.