Trafficking protein particle complex subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05000 |
| fragaria_vesca | FvH4_6g04260 |
| malus_domestica | MD00G1052700.v1.1 MD12G1229300.v1.1 MD12G1230100.v1.1 |
| prunus_persica | Prupe.6G334800_v2.0.a1 |
| pyrus_communis | pycom04g18990 pycom12g21390 |
| rosa_chinensis | RchiOBHm_Chr3g0452951 RchiOBHm_Chr5g0055691 |
| rosa_laevigata | RLG00000025559 |
| rosa_multiflora | Rmu_sc0005888.1_g000018 |
| rosa_roxburghii | Rroxscaffold_6G00429950 |
| rosa_rugosa | Rorug02G0643800 Rorug05G0294600 |
| rosa_samantha | Rh3AG046800 Rh3BG049200 Rh3CG047900 Rh3DG048800 |
| rosa_wichuraiana | Rw3G003670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 151 |
| AccI | GTMKAC | 1 cut(s) | 37 |
| AciI | CCGC | 3 cut(s) | 99, 151, 374 |
| AclWI | GGATC | 2 cut(s) | 116, 320 |
| AcoI | YGGCCR | 1 cut(s) | 133 |
| AcsI | RAATTY | 1 cut(s) | 361 |
| AfaI | GTAC | 3 cut(s) | 62, 155, 274 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 105, 267, 503 |
| AgsI | TTSAA | 1 cut(s) | 235 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 220 |
| AjnI | CCWGG | 1 cut(s) | 126 |
| AluBI | AGCT | 5 cut(s) | 24, 94, 142, 229, 493 |
| AluI | AGCT | 5 cut(s) | 24, 94, 142, 229, 493 |
| Alw21I | GWGCWC | 2 cut(s) | 96, 231 |
| Alw26I | GTCTC | 3 cut(s) | 19, 58, 339 |
| AlwI | GGATC | 2 cut(s) | 116, 320 |
| AoxI | GGCC | 2 cut(s) | 133, 167 |
| ApeKI | GCWGC | 3 cut(s) | 24, 371, 389 |
| ApoI | RAATTY | 1 cut(s) | 361 |
| AspS9I | GGNCC | 1 cut(s) | 222 |
| AvaII | GGWCC | 1 cut(s) | 222 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 264, 297 |
| BanII | GRGCYC | 3 cut(s) | 96, 231, 445 |
| Bbv12I | GWGCWC | 2 cut(s) | 96, 231 |
| BbvI | GCAGC | 3 cut(s) | 11, 358, 401 |
| BccI | CCATC | 2 cut(s) | 43, 144 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 275, 309 |
| BciT130I | CCWGG | 1 cut(s) | 128 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BcoDI | GTCTC | 3 cut(s) | 19, 58, 339 |
| BfaI | CTAG | 1 cut(s) | 188 |
| BisI | GCNGC | 4 cut(s) | 25, 99, 372, 390 |
| BlsI | GCNGC | 4 cut(s) | 26, 100, 373, 391 |
| Bme1390I | CCNGG | 1 cut(s) | 128 |
| Bme18I | GGWCC | 1 cut(s) | 222 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 220 |
| BmgT120I | GGNCC | 1 cut(s) | 222 |
| BmrFI | CCNGG | 1 cut(s) | 128 |
| BmsI | GCATC | 2 cut(s) | 181, 418 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 38, 70 |
| Bpu10I | CCTNAGC | 1 cut(s) | 90 |
| BpuEI | CTTGAG | 1 cut(s) | 339 |
| Bsa29I | ATCGAT | 1 cut(s) | 295 |
| BsaI | GGTCTC | 2 cut(s) | 19, 58 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 105, 267, 503 |
| BseBI | CCWGG | 1 cut(s) | 128 |
| BseCI | ATCGAT | 1 cut(s) | 295 |
| BseGI | GGATG | 2 cut(s) | 382, 485 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 105, 267, 503 |
| BseMII | CTCAG | 3 cut(s) | 30, 81, 357 |
| BseXI | GCAGC | 3 cut(s) | 11, 358, 401 |
| BseYI | CCCAGC | 1 cut(s) | 489 |
| BshFI | GGCC | 2 cut(s) | 135, 169 |
| BshVI | ATCGAT | 1 cut(s) | 295 |
| BsiHKAI | GWGCWC | 2 cut(s) | 96, 231 |
| BslFI | GGGAC | 1 cut(s) | 304 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 105, 267, 503 |
| BsmAI | GTCTC | 3 cut(s) | 19, 58, 339 |
| BsmFI | GGGAC | 1 cut(s) | 304 |
| BsnI | GGCC | 2 cut(s) | 135, 169 |
| Bso31I | GGTCTC | 2 cut(s) | 19, 58 |
| Bsp1286I | GDGCHC | 3 cut(s) | 96, 231, 445 |
| Bsp143I | GATC | 3 cut(s) | 108, 181, 325 |
| BspACI | CCGC | 3 cut(s) | 99, 151, 374 |
| BspANI | GGCC | 2 cut(s) | 135, 169 |
| BspCNI | CTCAG | 3 cut(s) | 29, 82, 358 |
| BspDI | ATCGAT | 1 cut(s) | 295 |
| BspPI | GGATC | 2 cut(s) | 116, 320 |
| BspQI | GCTCTTC | 2 cut(s) | 236, 450 |
| BspTNI | GGTCTC | 2 cut(s) | 19, 58 |
| BsrBI | CCGCTC | 1 cut(s) | 151 |
| BssMI | GATC | 3 cut(s) | 108, 181, 325 |
| Bst2UI | CCWGG | 1 cut(s) | 128 |
| Bst4CI | ACNGT | 2 cut(s) | 35, 528 |
| Bst6I | CTCTTC | 2 cut(s) | 236, 450 |
| BstC8I | GCNNGC | 2 cut(s) | 96, 103 |
| BstDEI | CTNAG | 4 cut(s) | 16, 90, 366, 537 |
| BstF5I | GGATG | 2 cut(s) | 382, 485 |
| BstKTI | GATC | 3 cut(s) | 111, 184, 328 |
| BstMAI | GTCTC | 3 cut(s) | 19, 58, 339 |
| BstMBI | GATC | 3 cut(s) | 108, 181, 325 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 148, 476, 538 |
| BstNI | CCWGG | 1 cut(s) | 128 |
| BstNSI | RCATGY | 2 cut(s) | 319, 409 |
| BstSCI | CCNGG | 1 cut(s) | 126 |
| BstV1I | GCAGC | 3 cut(s) | 11, 358, 401 |
| Bsu15I | ATCGAT | 1 cut(s) | 295 |
| BsuRI | GGCC | 2 cut(s) | 135, 169 |
| BsuTUI | ATCGAT | 1 cut(s) | 295 |
| BtsCI | GGATG | 2 cut(s) | 382, 485 |
| BtsIMutI | CAGTG | 1 cut(s) | 533 |
| Cac8I | GCNNGC | 2 cut(s) | 96, 103 |
| Cfr13I | GGNCC | 1 cut(s) | 222 |
| ClaI | ATCGAT | 1 cut(s) | 295 |
| CseI | GACGC | 1 cut(s) | 122 |
| CsiI | ACCWGGT | 1 cut(s) | 126 |
| Csp6I | GTAC | 3 cut(s) | 61, 154, 273 |
| CviAII | CATG | 3 cut(s) | 316, 406, 423 |
| CviQI | GTAC | 3 cut(s) | 61, 154, 273 |
| DdeI | CTNAG | 4 cut(s) | 16, 90, 366, 537 |
| DpnI | GATC | 3 cut(s) | 110, 183, 327 |
| DpnII | GATC | 3 cut(s) | 108, 181, 325 |
| DriI | GACNNNNNGTC | 1 cut(s) | 220 |
| EaeI | YGGCCR | 1 cut(s) | 133 |
| Eam1104I | CTCTTC | 2 cut(s) | 236, 450 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 220 |
| EarI | CTCTTC | 2 cut(s) | 236, 450 |
| Ecl136II | GAGCTC | 2 cut(s) | 94, 229 |
| Eco147I | AGGCCT | 1 cut(s) | 169 |
| Eco24I | GRGCYC | 3 cut(s) | 96, 231, 445 |
| Eco31I | GGTCTC | 2 cut(s) | 19, 58 |
| Eco47I | GGWCC | 1 cut(s) | 222 |
| Eco53kI | GAGCTC | 2 cut(s) | 94, 229 |
| EcoICRI | GAGCTC | 2 cut(s) | 94, 229 |
| EcoRI | GAATTC | 1 cut(s) | 361 |
| EcoRII | CCWGG | 1 cut(s) | 126 |
| EcoT22I | ATGCAT | 1 cut(s) | 411 |
| EcoT38I | GRGCYC | 3 cut(s) | 96, 231, 445 |
| FaeI | CATG | 3 cut(s) | 319, 409, 426 |
| FaiI | YATR | 9 cut(s) | 59, 76, 267, 317, 407, 424, 434, 450, 544 |
| FaqI | GGGAC | 1 cut(s) | 304 |
| FatI | CATG | 3 cut(s) | 315, 405, 422 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| FblI | GTMKAC | 1 cut(s) | 37 |
| Fnu4HI | GCNGC | 4 cut(s) | 25, 99, 372, 390 |
| FokI | GGATG | 2 cut(s) | 389, 472 |
| FriOI | GRGCYC | 3 cut(s) | 96, 231, 445 |
| Fsp4HI | GCNGC | 4 cut(s) | 25, 99, 372, 390 |
| FspBI | CTAG | 1 cut(s) | 188 |
| GluI | GCNGC | 4 cut(s) | 25, 99, 372, 390 |
| GsaI | CCCAGC | 1 cut(s) | 493 |
| HaeIII | GGCC | 2 cut(s) | 135, 169 |
| HgaI | GACGC | 1 cut(s) | 122 |
| Hin1II | CATG | 3 cut(s) | 319, 409, 426 |
| HinfI | GANTC | 1 cut(s) | 429 |
| Hpy166II | GTNNAC | 3 cut(s) | 31, 38, 156 |
| Hpy188I | TCNGA | 5 cut(s) | 19, 148, 226, 337, 367 |
| Hpy188III | TCNNGA | 3 cut(s) | 188, 235, 356 |
| Hpy8I | GTNNAC | 3 cut(s) | 31, 38, 156 |
| Hpy99I | CGWCG | 1 cut(s) | 116 |
| HpyAV | CCTTC | 1 cut(s) | 339 |
| HpyCH4III | ACNGT | 2 cut(s) | 35, 528 |
| HpyCH4V | TGCA | 5 cut(s) | 66, 194, 210, 286, 409 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 148, 476, 538 |
| HpyF3I | CTNAG | 4 cut(s) | 16, 90, 366, 537 |
| Hsp92II | CATG | 3 cut(s) | 319, 409, 426 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| Kzo9I | GATC | 3 cut(s) | 108, 181, 325 |
| LguI | GCTCTTC | 2 cut(s) | 236, 450 |
| LpnPI | CCDG | 8 cut(s) | 91, 102, 113, 115, 140, 205, 503, 510 |
| Lsp1109I | GCAGC | 3 cut(s) | 11, 358, 401 |
| LweI | GCATC | 2 cut(s) | 181, 418 |
| MabI | ACCWGGT | 1 cut(s) | 126 |
| MaeI | CTAG | 1 cut(s) | 188 |
| MalI | GATC | 3 cut(s) | 110, 183, 327 |
| MbiI | CCGCTC | 1 cut(s) | 151 |
| MboI | GATC | 3 cut(s) | 108, 181, 325 |
| MboII | GAAGA | 3 cut(s) | 223, 324, 437 |
| MhlI | GDGCHC | 3 cut(s) | 96, 231, 445 |
| MluCI | AATT | 3 cut(s) | 195, 361, 516 |
| MlyI | GAGTC | 1 cut(s) | 438 |
| MnlI | CCTC | 4 cut(s) | 4, 159, 180, 361 |
| Mph1103I | ATGCAT | 1 cut(s) | 411 |
| MseI | TTAA | 3 cut(s) | 198, 254, 515 |
| MslI | CAYNNNNRTG | 1 cut(s) | 189 |
| MspR9I | CCNGG | 1 cut(s) | 128 |
| MvaI | CCWGG | 1 cut(s) | 128 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 148, 476, 538 |
| NdeII | GATC | 3 cut(s) | 108, 181, 325 |
| NlaIII | CATG | 3 cut(s) | 319, 409, 426 |
| NsiI | ATGCAT | 1 cut(s) | 411 |
| NspI | RCATGY | 2 cut(s) | 319, 409 |
| PceI | AGGCCT | 1 cut(s) | 169 |
| PciSI | GCTCTTC | 2 cut(s) | 236, 450 |
| PkrI | GCNGC | 4 cut(s) | 26, 100, 373, 391 |
| PleI | GAGTC | 1 cut(s) | 437 |
| PpsI | GAGTC | 1 cut(s) | 437 |
| Psp124BI | GAGCTC | 2 cut(s) | 96, 231 |
| Psp6I | CCWGG | 1 cut(s) | 126 |
| PspFI | CCCAGC | 1 cut(s) | 489 |
| PspGI | CCWGG | 1 cut(s) | 126 |
| PspPI | GGNCC | 1 cut(s) | 222 |
| RsaI | GTAC | 3 cut(s) | 62, 155, 274 |
| RsaNI | GTAC | 3 cut(s) | 61, 154, 273 |
| RseI | CAYNNNNRTG | 1 cut(s) | 189 |
| SacI | GAGCTC | 2 cut(s) | 96, 231 |
| SapI | GCTCTTC | 2 cut(s) | 236, 450 |
| SaqAI | TTAA | 3 cut(s) | 198, 254, 515 |
| SatI | GCNGC | 4 cut(s) | 25, 99, 372, 390 |
| Sau3AI | GATC | 3 cut(s) | 108, 181, 325 |
| Sau96I | GGNCC | 1 cut(s) | 222 |
| SchI | GAGTC | 1 cut(s) | 438 |
| ScrFI | CCNGG | 1 cut(s) | 128 |
| SduI | GDGCHC | 3 cut(s) | 96, 231, 445 |
| SetI | ASST | 7 cut(s) | 15, 26, 96, 132, 144, 231, 495 |
| SexAI | ACCWGGT | 1 cut(s) | 126 |
| SfaNI | GCATC | 2 cut(s) | 181, 418 |
| SinI | GGWCC | 1 cut(s) | 222 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 189 |
| SmlI | CTYRAG | 1 cut(s) | 354 |
| SmoI | CTYRAG | 1 cut(s) | 354 |
| Sse9I | AATT | 3 cut(s) | 195, 361, 516 |
| SseBI | AGGCCT | 1 cut(s) | 169 |
| SsiI | CCGC | 3 cut(s) | 99, 151, 374 |
| SspMI | CTAG | 1 cut(s) | 188 |
| SstI | GAGCTC | 2 cut(s) | 96, 231 |
| StuI | AGGCCT | 1 cut(s) | 169 |
| StyD4I | CCNGG | 1 cut(s) | 126 |
| TaaI | ACNGT | 2 cut(s) | 35, 528 |
| TaqI | TCGA | 3 cut(s) | 70, 111, 295 |
| TasI | AATT | 3 cut(s) | 195, 361, 516 |
| TatI | WGTACW | 1 cut(s) | 60 |
| TauI | GCSGC | 1 cut(s) | 101 |
| Tru1I | TTAA | 3 cut(s) | 198, 254, 515 |
| Tru9I | TTAA | 3 cut(s) | 198, 254, 515 |
| TscAI | CASTG | 1 cut(s) | 533 |
| TseI | GCWGC | 3 cut(s) | 24, 371, 389 |
| TspDTI | ATGAA | 3 cut(s) | 193, 393, 437 |
| TspGWI | ACGGA | 1 cut(s) | 357 |
| TspRI | CASTG | 1 cut(s) | 533 |
| VpaK11BI | GGWCC | 1 cut(s) | 222 |
| XapI | RAATTY | 1 cut(s) | 361 |
| XbaI | TCTAGA | 1 cut(s) | 187 |
| XceI | RCATGY | 2 cut(s) | 319, 409 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 422 |
| XmiI | GTMKAC | 1 cut(s) | 37 |
| XspI | CTAG | 1 cut(s) | 188 |
| Zsp2I | ATGCAT | 1 cut(s) | 411 |