RchiOBHm_Chr5g0055691

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0010961
Physical Location & Seq
Reverse (-)
59005033 .. 59005844
812 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33265

Sequence Viewer

Length: 447 bp
ATGCCAATAAGCCCGAGTTTGCTGCCAGTAGGATCGACGCCATTGGCTACCAGGTCGGCCACCAGCTCTCCAAGAGGAAATTGCTTTACATGTGCAGAGTTGGTGAAAAATAATGGAGCGGCATGGTTTACTGATCATCTCGATGCAAGTAAGTTCATCTGCAAGGATTTCTGGTCTGAGCTTTTCAAGAAGCAGATAGACAACTTGAAGATCAATCATAGGGTAACTTCTAGAATCGATGTGAATTTGCATTCGTCCACTGAAAATGGAGACGTATCTCAAGAAAATTCTGAGGCCTCGGCTGAAAACAAGGCGGCACAAGTACCGACCATGCATCTCCATTTCTCTTGCAGGGTCATTAAAGGGACTCTTCATAACTTGGGGATTACTTGCGCTGTTTCTGTGGACGCATCCCATCTCCCTGCAGGTGAGTGTCTCTCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

148

Amino Acids

15.99

Weight (kDa)

6.64

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 35 - 142 1.6e-16 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05000
fragaria_vesca FvH4_6g04260
malus_domestica MD00G1052700.v1.1 MD12G1229300.v1.1 MD12G1230100.v1.1
prunus_persica Prupe.6G334800_v2.0.a1
pyrus_communis pycom04g18990 pycom12g21390
rosa_chinensis RchiOBHm_Chr3g0452951 RchiOBHm_Chr5g0055691
rosa_laevigata RLG00000025559
rosa_multiflora Rmu_sc0005888.1_g000018
rosa_roxburghii Rroxscaffold_6G00429950
rosa_rugosa Rorug02G0643800 Rorug05G0294600
rosa_samantha Rh3AG046800 Rh3BG049200 Rh3CG047900 Rh3DG048800
rosa_wichuraiana Rw3G003670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 416
Acc36I ACCTGC 1 cut(s) 416
AccBSI CCGCTC 1 cut(s) 119
AciI CCGC 2 cut(s) 119, 314
AclWI GGATC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 2 cut(s) 244, 286
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 324
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 2 cut(s) 187, 208
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 2 cut(s) 66, 181
AluI AGCT 2 cut(s) 66, 181
Alw26I GTCTC 2 cut(s) 264, 440
AlwI GGATC 1 cut(s) 40
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 2 cut(s) 57, 294
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 2 cut(s) 244, 286
AspLEI GCGC 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 115, 440
AvaI CYCGRG 1 cut(s) 13
BbvI GCAGC 1 cut(s) 9
BccI CCATC 1 cut(s) 423
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 1 cut(s) 52
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 264, 440
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 416
BisI GCNGC 3 cut(s) 23, 120, 315
BlsI GCNGC 3 cut(s) 24, 121, 316
Bme1390I CCNGG 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 3 cut(s) 133, 343, 419
BplI GAGNNNNNCTC 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 264
Bsa29I ATCGAT 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bse1I ACTGG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 52
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 410
BseMII CTCAG 2 cut(s) 168, 282
BseNI ACTGG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 9
BsgI GTGCAG 1 cut(s) 114
BshFI GGCC 2 cut(s) 59, 296
BshVI ATCGAT 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 379
BsmAI GTCTC 2 cut(s) 264, 440
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 379
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 2 cut(s) 59, 296
BsoBI CYCGRG 1 cut(s) 13
Bsp143I GATC 3 cut(s) 32, 133, 210
BspACI CCGC 2 cut(s) 119, 314
BspANI GGCC 2 cut(s) 59, 296
BspCNI CTCAG 2 cut(s) 169, 283
BspDI ATCGAT 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 427
BspMI ACCTGC 1 cut(s) 416
BspPI GGATC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 3 cut(s) 32, 133, 210
BssNI GRCGYC 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 375
BstACI GRCGYC 1 cut(s) 38
BstDEI CTNAG 2 cut(s) 177, 291
BstF5I GGATG 1 cut(s) 410
BstHHI GCGC 1 cut(s) 395
BstKTI GATC 3 cut(s) 35, 136, 213
BstMAI GTCTC 2 cut(s) 264, 440
BstMBI GATC 3 cut(s) 32, 133, 210
BstNI CCWGG 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 423
BstV1I GCAGC 1 cut(s) 9
Bsu15I ATCGAT 1 cut(s) 237
BsuRI GGCC 2 cut(s) 59, 296
BsuTUI ATCGAT 1 cut(s) 237
BtsCI GGATG 1 cut(s) 410
BtsIMutI CAGTG 1 cut(s) 258
BveI ACCTGC 1 cut(s) 416
CfoI GCGC 1 cut(s) 395
ClaI ATCGAT 1 cut(s) 237
CseI GACGC 2 cut(s) 46, 416
CsiI ACCWGGT 1 cut(s) 50
Csp6I GTAC 1 cut(s) 323
CviAII CATG 3 cut(s) 90, 123, 331
CviJI RGCY 7 cut(s) 12, 47, 59, 66, 181, 296, 302
CviKI_1 RGCY 7 cut(s) 12, 47, 59, 66, 181, 296, 302
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 2 cut(s) 177, 291
DpnI GATC 3 cut(s) 34, 135, 212
DpnII GATC 3 cut(s) 32, 133, 210
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco147I AGGCCT 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 50
EcoT22I ATGCAT 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 3 cut(s) 93, 126, 334
FaiI YATR 5 cut(s) 91, 124, 219, 332, 375
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 1 cut(s) 379
FatI CATG 3 cut(s) 89, 122, 330
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 3 cut(s) 23, 120, 315
FokI GGATG 1 cut(s) 397
Fsp4HI GCNGC 3 cut(s) 23, 120, 315
FspBI CTAG 1 cut(s) 231
GlaI GCGC 1 cut(s) 394
GluI GCNGC 3 cut(s) 23, 120, 315
HaeIII GGCC 2 cut(s) 59, 296
HgaI GACGC 2 cut(s) 46, 416
HhaI GCGC 1 cut(s) 395
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 3 cut(s) 93, 126, 334
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HinfI GANTC 2 cut(s) 234, 367
HphI GGTGA 2 cut(s) 115, 440
Hpy166II GTNNAC 3 cut(s) 129, 258, 406
Hpy188I TCNGA 2 cut(s) 178, 292
Hpy188III TCNNGA 4 cut(s) 140, 187, 231, 281
Hpy8I GTNNAC 3 cut(s) 129, 258, 406
Hpy99I CGWCG 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 7 cut(s) 95, 146, 162, 250, 334, 351, 425
HpyF3I CTNAG 2 cut(s) 177, 291
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 3 cut(s) 93, 126, 334
HspAI GCGC 1 cut(s) 393
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 3 cut(s) 32, 133, 210
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 8 cut(s) 37, 39, 64, 76, 157, 337, 411, 435
Lsp1109I GCAGC 1 cut(s) 9
LweI GCATC 3 cut(s) 133, 343, 419
MabI ACCWGGT 1 cut(s) 50
MaeI CTAG 1 cut(s) 231
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 223
MalI GATC 3 cut(s) 34, 135, 212
MbiI CCGCTC 1 cut(s) 119
MboI GATC 3 cut(s) 32, 133, 210
MboII GAAGA 2 cut(s) 220, 362
MluCI AATT 3 cut(s) 79, 244, 286
MlyI GAGTC 1 cut(s) 361
MnlI CCTC 3 cut(s) 68, 286, 307
Mph1103I ATGCAT 1 cut(s) 336
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 52
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 1 cut(s) 52
NdeII GATC 3 cut(s) 32, 133, 210
NlaIII CATG 3 cut(s) 93, 126, 334
NmeAIII GCCGAG 1 cut(s) 278
NsiI ATGCAT 1 cut(s) 336
NspI RCATGY 1 cut(s) 93
PaqCI CACCTGC 1 cut(s) 416
PceI AGGCCT 1 cut(s) 296
PciI ACATGT 1 cut(s) 89
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 1 cut(s) 234
PkrI GCNGC 3 cut(s) 24, 121, 316
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
PscI ACATGT 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PstI CTGCAG 1 cut(s) 427
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 3 cut(s) 23, 120, 315
Sau3AI GATC 3 cut(s) 32, 133, 210
SbfI CCTGCAGG 1 cut(s) 427
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 52
SdaI CCTGCAGG 1 cut(s) 427
SetI ASST 5 cut(s) 56, 68, 183, 276, 430
SexAI ACCWGGT 1 cut(s) 50
SfaNI GCATC 3 cut(s) 133, 343, 419
SfcI CTRYAG 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse8387I CCTGCAGG 1 cut(s) 427
Sse9I AATT 3 cut(s) 79, 244, 286
SseBI AGGCCT 1 cut(s) 296
SsiI CCGC 2 cut(s) 119, 314
SspMI CTAG 1 cut(s) 231
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 50
TaiI ACGT 1 cut(s) 276
TaqI TCGA 3 cut(s) 35, 141, 237
TasI AATT 3 cut(s) 79, 244, 286
TauI GCSGC 2 cut(s) 122, 317
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 1 cut(s) 265
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 145, 362
TspRI CASTG 1 cut(s) 265
XapI RAATTY 2 cut(s) 244, 286
XbaI TCTAGA 1 cut(s) 230
XceI RCATGY 1 cut(s) 93
XspI CTAG 1 cut(s) 231
Zsp2I ATGCAT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.